BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36640.1
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490973 jgi|Araly1|490973|fgenesh2_kg.7__406__AT4G36640.1 1688 0.0
> Ahg490973 jgi|Araly1|490973|fgenesh2_kg.7__406__AT4G36640.1
Length=1271
Score = 1688 bits (914), Expect = 0.0
Identities = 1187/1310 (91%), Gaps = 53/1310 (4%)
Strand=Plus/Plus
Query 1 TTTTAAGTCCCTTTGAAGTGGGAATGATACTCGCGTGACGACCAAACTCCATCGAGCctc 60
|||||||||| ||||||||||||||||||||| |||||| |||||||| ||| || ||||
Sbjct 1 TTTTAAGTCCATTTGAAGTGGGAATGATACTCTCGTGACTACCAAACTTCATTGATCCTC 60
Query 61 tctctctctctctGTGATCAGTTTAA--TCTACTgaaagaaagaaagaaagaaagaaaga 118
|||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||
Sbjct 61 TCTCTCTCTCTCTGTGATCAGTTTAATCTCTACTG-AAGAAAGAACGAAAGAAAGAAAGA 119
Query 119 TCCGTATTATTAGGCTTCGAAGCTGTCTCAAGATTGTTGTTTAATTAAACATGTTCAGAA 178
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 TCCGTATTATTAGGCTTTGAAGCTGTCTCAAGATTGTTGTTTAATCAAACATGTTCAGAA 179
Query 179 GAAGGAATGCTCACCAACTCGACAATGATGATTCTCAAC-AAGATAACAAGGTTAGAGAA 237
||||||||||||||||||||| | |||||||||| || ||||||||||||||||||||
Sbjct 180 GAAGGAATGCTCACCAACTCG---AGGATGATTCTC-ACAAAGATAACAAGGTTAGAGAA 235
Query 238 TTGAAATCCGCGATAGGACCATTATCGGGACATAGTTTAGTTTTCTGCTCTGATGCTTCC 297
||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 236 TTGAAATCCGCCATAGGACCACTATCGGGACATCGTTTAGTTTTCTGCTCTGATGCTTCA 295
Query 298 TTGAGGAGAT-TTCTAGATGCTCGTAATTGGGATGTGGAAAAAGCCAAGAAAATGATCCA 356
|||||||||| || | ||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 296 TTGAGGAGATATT-TGGATGCTCGTAATTGGAATGTGGAAAAAGCCAAGAAAATGATTGA 354
Query 357 AGAGACTCTTAAATGGAGATCAACTTATAAACCTCAAGAGATCCGTTGGAATCAAGTAGC 416
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 355 AGAGACTCTTAAATGGAGATCAACCTATAAACCTCAAGAGATCCGTTGGAATCAAGTAGC 414
Query 417 ACATGAAGGTGAGACCGGAAAAGCTTCAAGAGCTAGTTTTCATGATCGACAAGGTAGAGT 476
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 415 ACATGAAGGTGAGACTGGAAAAATTTCAAGAGCTAGTTTTCATGATCGACAAGGTAGAGT 474
Query 477 AGTGCTTATAATGAGACCAGCCAT-GCAGAACTCAACATCA-CAAGAAGGTAATATCAGG 534
|||||||||||||||||| || || ||| |||||||| ||| || ||||||||||||| |
Sbjct 475 AGTGCTTATAATGAGACCCGC-ATTGCAAAACTCAACTTCATCA-GAAGGTAATATCAAG 532
Query 535 CATTTGGTGTATCTTCTTGAAAATGCAATCATAAATCTTCCCAAGGGACAAAAACAAATG 594
|||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 533 CATTTGGTCTATCTTCTTGAAAATGCAATCCTAAATCTTCCCAAGGGACAAGAACAAATG 592
Query 595 TCTTGGCTCATTGATTTCACTGGTTGGTCTATGGCTGTTAATCCTCCTATGAAAACAACA 654
||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 593 TCTTGGCTCATCGATTTCACTGGTTGGTCTATGGCTGCTAATGTTCCTATGAAAACAACA 652
Query 655 CGCGAAATCATTCACATTCTACAGAA-CTATTACCCTGAGAGACTCGGTATCGCCTTTCT 713
||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 653 CGCGAAATCATCCACATTCTACAGAATC-ATTACCCTGAGAGACTCGGTATCGCCTTTCT 711
Query 714 CTACAATCCACCAAGACTCTTCCAAGCAGTCTACAGGGCTGCTAAGTACTTCTTGGACCC 773
||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 712 CTATAATCCACCAAGAATCTTCCAAGCATTCTACAGGGCTGCTAAGTACTTCTTGGACCC 771
Query 774 ACGTACAGCTGAAAAGGTGAAATTTGTGTACCCAAAAGACAAAGCAAGTGATGAACTGAT 833
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 772 ATGTACAGCTGAAAAGGTGAAATTTGTGTACCCAAAAGACAAAGCAAGTGATGAATTGAT 831
Query 834 GACGA-CACATTTTGACGTTGAGAATCTCCCCAAGGAATTCGGAGGTGAAGCAACACTAG 892
||| | |||| ||||| |||||||||||||||||||||| ||||| |||||||||||||
Sbjct 832 GAC-ATCACACTTTGATATTGAGAATCTCCCCAAGGAATTTGGAGGAGAAGCAACACTAG 890
Query 893 AGTATGATCATGAAGATTTCTCACGACAAATGTATGAAGACGATCTCAAAACCGCAAAAT 952
||||||||||||| ||||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 891 AGTATGATCATGAGGATTTCTCAAGACAAATGTGTGAAGACGATGTCAAAACCGCAAAAT 950
Query 953 ACTGGGGACTAGAGGGGAAGCACTATCCGAAAACAAACGGTTTCTCTCCATCCGATGTTG 1012
|||||||| | |||| |||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 951 ACTGGGGATTGGAGGAGAAGCACTATCCGAAACCAAACGGTTTCTCTGCATCCGATGTTG 1010
Query 1013 TTCCTGAGCCGGCGA-TAGAAATCGCATCAGCAGCTAGCTGAGAGTTGAACGATATA-TA 1070
||||||||||||| | | | | |||||||| ||||||||||||||||| ||||| ||
Sbjct 1011 TTCCTGAGCCGGCAACTTCTATT-GCATCAGCCGCTAGCTGAGAGTTGAAT-ATATAATA 1068
Query 1071 CACACA-AGAG-CAAGAAGAGAAGAAGAATAAAAGGGTTATTCTCATTCATAGAAGAAA- 1127
||||| ||| ||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1069 TACACAGAGAAACAAGAAGAGAAGAAGAATAAA-GGTTTATTCTCATTGATAGAAGAAGG 1127
Query 1128 AGCCAATAGAATGTGCTGGTTAACTTGATGATCAATAAAGTTTCAAATAGTCTTTGCCTC 1187
||||| |||||||||||||||||||||| | || | | | | | | ||
Sbjct 1128 AGCCATTAGAATGTGCTGGTTAACTTGA-G-TC--T----T---A----G-C----C-TC 1166
Query 1188 TTTTTCTTATTAGTGAGCCAAACACTTT-GTAACGTTTTTAATTAGCAGAGACTATCCTG 1246
|||||||||||||||||||||| ||||| | || ||||| |||||| |||| || | ||
Sbjct 1167 TTTTTCTTATTAGTGAGCCAAAGACTTTTG-AATGTTTT-AATTAGAAGAG-CT-TA-TG 1221
Query 1247 TATGTGTGAGAGAATATTGTTACCATGTGTAATACTACTAGTTTTGTGTT 1296
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 TATGTGTGAGAGAATATTGTTACCATGTGTAATACTACTAGTTTTGTGTT 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48759210843
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5