BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G36648.1

Length=2105
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944213 jgi|Araly1|944213|scaffold_700442.1                        296    4e-79


> Ahg944213 jgi|Araly1|944213|scaffold_700442.1
Length=236

 Score =  296 bits (160),  Expect = 4e-79
 Identities = 214/238 (90%), Gaps = 12/238 (5%)
 Strand=Plus/Minus

Query  269  TACTGAGCTTTTGATGAGGTGATGAATGATGAATCCGTCAATTCTCT-ATGGAGCT--ag  325
            |||||||||| |||| |||||| | ||  |   | |||||||| | | ||||||||  ||
Sbjct  230  TACTGAGCTTGTGATTAGGTGACG-AT--T---T-CGTCAATTAT-TGATGGAGCTAGAG  179

Query  326  agagatgagagggtgaagaagagagaagaagCTGATATGTGATATTGATGTGAGTTAAGT  385
            ||||| |||||  ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  178  AGAGAGGAGAGATTGAAGAAGAGAGAAGAAGCTGATATGTGAAATTGATGTGAGTTAAGT  119

Query  386  TGATTGATGGATGTATGAGATGTTTATAGGGACGATATAGTTCTGCGTAAACATCTTTGT  445
            |||||||||| ||||||||||||||| ||||||||||||||||||  |||||||||||||
Sbjct  118  TGATTGATGGGTGTATGAGATGTTTAAAGGGACGATATAGTTCTGAATAAACATCTTTGT  59

Query  446  CATCCGACCTTTGCCATGACAGGTGCGCTTGCATGGCAGGTCACCAAAA-TCCTTAAT  502
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  58   CATCCGACCTTTGCCATGACAGGTGCGCTTGCATGGCAGGTCACCAAAAATCCTTAAT  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 79189619355


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5