BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36650.1
Length=1733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328104 jgi|Araly1|328104|fgenesh1_pm.C_scaffold_7000331 2318 0.0
> Ahg328104 jgi|Araly1|328104|fgenesh1_pm.C_scaffold_7000331
Length=1521
Score = 2318 bits (1255), Expect = 0.0
Identities = 1440/1526 (94%), Gaps = 26/1526 (2%)
Strand=Plus/Plus
Query 73 ATGAAGTGTCCGTACTGTTCATCGGCGCAGGGACGGTGTACCACCACGAGCTCCGGTAGA 132
||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct 1 ATGAAGTGTCCGTACTGTTCATCGGCGCAAGGACGGTGTGCCACCACAAGCTCCGGTAGA 60
Query 133 TCAATAACGGAGTGCTCATCTTGCGGTCGCGTAATGGAAGAACGACAGACGCAAAACCAC 192
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 TCAATAACGGAGTGCTCATCTTGCGGTCGCGTAATGGAAGAACGTCAGACGCAAAACCAT 120
Query 193 CACCTCTTCCATCTCCGAGCCCAAGACACTCCTCTCTGCT-TAGTCACTTCCGATCTCCA 251
|||||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||
Sbjct 121 CACCTCTTCCATCTCCGAGCCCAAGACACTCCTCTCTG-TCTCGTCACTTCTGATCTCCA 179
Query 252 AACGGCGGCGCAACCGTCTCCTGAAGACGAGGAAGATCCGTTCGAACCTACCGGATTCAT 311
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 AACGGCGGCGCAACCGTCTCCTGAAGACGAGGAAGATCCGTTCGAACCTACTGGATTCAT 239
Query 312 TACCGCCTTCTCTACCTGGTCCCTCGAGCCAAGCCCGATTTTCGCTCGCTCTTCCCTCTC 371
||||| |||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct 240 CACCGCTTTCTCTACCTGGTCCCTCGAGCCAAGTCCGATCTTCGCTCGGTCCTCCCTCTC 299
Query 372 TTTCTCCGGTCATCTCGCTGAACTCGAACGAACCCTAGAACTCGCTTCGTCAACATCGAA 431
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 TTTCGCCGGTCATCTCGCTGAACTCGAACGAACCCTAGAACTCGCTTCGTCTACATCGAA 359
Query 432 TTCGAATTCGTCGACTGTTGTGGTGGATAATCTTAGGGCTTATATGCAGATTATCGATGT 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTCGAATTCGTCGACTGTTGTGGTGGATAATCTTAGGGCTTATATGCAGATTATCGATGT 419
Query 492 GGCATCGATTTTAGGATTGGATTGCGATATCTCTGAGCATGCTTTCCAGTTGTTTAGGGA 551
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGCGTCGATTTTAGGGTTGGATTGCGATATCTCTGAGCATGCTTTCCAGTTGTTTAGGGA 479
Query 552 TTGTTGCTCAGCTACTTGCTTGCGAAACAGAAGCGTTGAAGCTTTAGCCACTGCTTGCCT 611
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 TTGTTGCTCAGCTACTTGCTTGCGGAACAGAAGCGTTGAAGCTTTAGCCACTGCTTGCCT 539
Query 612 TGTTCAAGCTATTAGGGAGGCTCAAGAACCTAGAACTCTTCAGGAAATCTCCATTGCAGC 671
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 540 TGTTCAAGCTATTAGGGAAGCTCAGGAGCCTAGAACTCTTCAGGAAATCTCCATTGCAGC 599
Query 672 CAATGTACAGCAGAAGGAAATTGGGAAGTACATCAAGATTTTAGGAGAAGCTCTACAACT 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAATGTACAGCAGAAGGAAATTGGGAAGTACATCAAGATTTTAGGAGAAGCTCTACAACT 659
Query 732 AAGTCAACCCATCAACAGTAACTCTATATCAGTTCATATGCCAAGATTCTGTACCCTCCT 791
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TAGTCAACCCATCAACAGTAACTCTATATCAGTTCATATGCCAAGATTCTGTACCCTCCT 719
Query 792 TCAACTAAACAAATCTGCTCAGGAACTAGCAACACACATTGGAGAAGTTGTGATCAACAA 851
|| || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 720 CCAGCTTAACAAATCTGCTCAGGAACTAGCAACACATATTGGAGAAGTTGTGATTAACAA 779
Query 852 ATGCTTCTGCACCCGTAGAAACCCGATCAGCATTTCTGCAGCTGCTATCTATCTGGCATG 911
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 780 ATGCTTCTGCACCCGTAGAAACCCAATCAGCATTTCTGCAGCTGCAATCTATCTGGCATG 839
Query 912 TCAACTTGAAGACAAGCGAAAGACACAAGCAGAGATATGTAAAATAACCGGACTAACTGA 971
||| ||||||||||| |||||||| |||||||||||||||||||||||||| || |||||
Sbjct 840 TCAGCTTGAAGACAAACGAAAGACGCAAGCAGAGATATGTAAAATAACCGGGCTCACTGA 899
Query 972 GGTAACTCTACGCAAAGTCTATAAAGAACTGCTAGAGAATTGGGACGATCTACTTCCATC 1031
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 900 GGTAACTCTACGCAAAGTCTATAAGGAACTGCTAGAGAATTGGGACGATCTACTTCCATC 959
Query 1032 TAACTACACACCAGCTGTGCCACCAGAGAAAGCATTTCCCACAACCACAATCTCCACAAC 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TAACTACACACCAGCTGTGCCACCAGAGAAAGCATTTCCCACAACCACAATCTCCACAAC 1019
Query 1092 CCGCTCAACAACTCCTAGAGCCGTGGATCCACCTGAACCTAGTTTCGTGGAAAAAGACAA 1151
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1020 CCGCTCAACAACTCCTAGAGCCGTGGATCCACCTGAACCTAGTTTCGTGGACAGAGACAA 1079
Query 1152 GCCCTCTG-CGAAACCAATCGAAACTTTCGATCATACCTACCAACAACCGAAAGGCAAAG 1210
||| |||| | |||||||| ||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1080 GCCATCTGTC-AAACCAATGGAAACTTCCGATCATACCTACCAACAACCCAAAGGCAAAG 1138
Query 1211 AAGATAAGCAGCCAAAATTCAGACAGCCTTGGCTGTTTGGAACTGCCAGTGTCATGAACC 1270
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AAGAGAAGCAGCCAAAATTCAGACAGCCTTGGCTGTTTGGAACTGCCAGTGTCATGAACC 1198
Query 1271 CAGCGGAGATGATAAGCGAGCCAGCAAAACCTAATGCTATGGACTATGAAAAGCAACAAC 1330
||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1199 CAGGGGAGATGATTAGCGAGCCAGCAAAACCTAATAATATGGACTATGAGAAGCAACAAC 1258
Query 1331 TCGATAagcagcagcagcagcagcTAGGCGATAAGGAAACATTGCCTATATATCTAAGAG 1390
||||||||||||||| | || ||||||||||||| |||||||||||||||||||||
Sbjct 1259 TCGATAAGCAGCAGC--C-GC---TAGGCGATAAGGAGACATTGCCTATATATCTAAGAC 1312
Query 1391 ACCATAACCCATTCCCTTCAAATCCATCTCCATCTACAGGTATCAGCACAATCAATTGGT 1450
| || |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1313 AACACAACCAATTCCCTTCAAATACATCTCCATCTACAGGTATCAGCACAATCAATTGGT 1372
Query 1451 CATTCCGACCATCTGTTGTCCCC-GGATCTTCCAGCAACTTGCCTGTTATTCATCCCCCA 1509
||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||
Sbjct 1373 CATTCCGACCATCTGGC-TCCCCTGGATCTTCCAGCAACTTGCCTGTTGTTCATCCGCCA 1431
Query 1510 AAACTACCTCC-GGGTTATGCTGAGATTAGAGGTAGTGGA----A----G----CAGGAA 1556
||||| ||||| |||| ||||||||||||||||||||||| | | ||||||
Sbjct 1432 AAACTGCCTCCAGGGT-ATGCTGAGATTAGAGGTAGTGGATCTCAAACAGGAAGCAGGAA 1490
Query 1557 TGCTGATAATCCCCATGGAGACTTCT 1582
|||| |||||||||||||||||||||
Sbjct 1491 TGCTAATAATCCCCATGGAGACTTCT 1516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65020048215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5