BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36660.1
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490970 jgi|Araly1|490970|fgenesh2_kg.7__403__AT4G36660.1 1199 0.0
> Ahg490970 jgi|Araly1|490970|fgenesh2_kg.7__403__AT4G36660.1
Length=843
Score = 1199 bits (649), Expect = 0.0
Identities = 797/862 (92%), Gaps = 36/862 (4%)
Strand=Plus/Plus
Query 11 CTCAGATTTAACAAAATCGAGCCGACACTTTCCCAATTGA-ACTGAATCTACTGAAATCG 69
||||||||||||||||||||| |||||| | ||| ||| | |||||||||||||||||||
Sbjct 5 CTCAGATTTAACAAAATCGAGACGACACATCCCCGATT-ACACTGAATCTACTGAAATCG 63
Query 70 ATTCACGAGAGCTCAGATTTGGTGTTAGCATCACTCACTAAGCAAGATTATTGAGTTGTA 129
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 64 ATTCACGAGAGCTCAGATTTGGTGTTAGCATCACTCGCTAAGCAAGATTATTGAG-TGTA 122
Query 130 ATTAGTATTTGAGATCAAGATGAAGGAGGACGATGCATTGCCGACGACGACGACGACTGG 189
||| |||||||||||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 123 ATTTGTATTTGAGATCGAGATGAAGGAGGACGATGCATTG-C--CGACGACGACGACTGG 179
Query 190 TACGGCGACGGGAACAGCTATGGCGAATTCGAAGAAGGA-AAGCTCTGACTCGGTCTTGT 248
||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |
Sbjct 180 TACGGCGACGGGAACAGCTATCGCGAATTCGAAGAAGGAGAA-CTCTGACTCGGTCTTAT 238
Query 249 TTGGAAGAGGTCGATATAAGTTCTGGGCGTTTGCTGCGATTTTGCTTTTGGCTTTTTGGT 308
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTGGAAGAGGTCGATACAAGTTCTGGGCGTTTGCTGCGATTTTGCTTTTGGCTTTTTGGT 298
Query 309 CGATGTTTACTGGCACCGTCACTCTCCGGTTATCTACCGGGAATCTGAACCGGTTATCGG 368
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 299 CGATGTTCACTGGCACCGTCACTCTCCGGTTATCTACCGGGAATCTAAACCGGTTATCGG 358
Query 369 AAGATCTAGGGATTCCGAACTACGATAATCTCGACGTTCTGGAAATGGAGGAGAGAGAGA 428
|||||||||||||||||||||| || || || ||||||||||||||||||||||| ||||
Sbjct 359 AAGATCTAGGGATTCCGAACTATGAAAACCTTGACGTTCTGGAAATGGAGGAGAGGGAGA 418
Query 429 AAGTGGTGAAGCATATGTGGGATGTGTATACTAATAGTCGTCGGATCAAATTGCCTAGAT 488
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 AAGTGGTGAAGCATATGTGGGATGTGTATACAAATAGTCGTCGGATCAAATTGCCTAGAT 478
Query 489 TTTGGCAAGAGGCTTTTGTTGCTGCTTATGAAGAACTCACTAGTGATGTGCCTGGGGTTA 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTTGGCAAGAGGCTTTTGTTGCTGCTTATGAAGAACTCACTAGTGATGTGCCTGGGGTTA 538
Query 549 GAGAAGCTGCTATTGGTGAAATCGCCAAGATGTCGGCGCGGTCGATCACTCTTGATCCAC 608
|||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 539 GAGAAGCTGCTATTGGTGAAATCGCCAAGATGTCGGTGCGGTCTATTACTCTTGATCCAC 598
Query 609 CTCCTTCTAGATCAATGAGTGCAAGGGATTTGGGAAGAAACTTGAAGAGAATTCTACACA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CTCCTTCTAGATCAATGAGTGCAAGGGATTTGGGAAGAAACTTGAAGAGAATTCTACACA 658
Query 669 AGCCAGCAGCTAGTAGCTGATAATGATATTGGTAACATA--T-------GTCTACT-ACT 718
||||||||||||||||||||| ||||||||||||||| | | ||||||| |||
Sbjct 659 AGCCAGCAGCTAGTAGCTGATGATGATATTGGTAACACACGTTTTTACAGTCTACTTACT 718
Query 719 TGCTGAAGCCAAAAGATGAACTACCAAATGGATAGATTTCATTTTGGGACTAAAATTCAA 778
| |||||||||||||||||||||||||||||||||| |||||||| | | |
Sbjct 719 TCCTGAAGCCAAAAGATGAACTACCAAATGGATAGAGTTCATTTT-----T----T-C-- 766
Query 779 TTTTCGAAATCAAATTGCTCTTTTTACATTCTATCG-TTGGTAATTATATAGAGCTACTT 837
||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||
Sbjct 767 -----GAAATCAAATTGCTCCTTTTATATTCTATCGATTGGTAATTACATAGAGCTACTT 821
Query 838 TTATAAATATATGTAGAAGCAA 859
|||||||||||||||||| |||
Sbjct 822 TTATAAATATATGTAGAAACAA 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33700658628
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5