BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36670.1
Length=1770
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490969 jgi|Araly1|490969|fgenesh2_kg.7__402__AT4G36670.1 2523 0.0
> Ahg490969 jgi|Araly1|490969|fgenesh2_kg.7__402__AT4G36670.1
Length=1711
Score = 2523 bits (1366), Expect = 0.0
Identities = 1527/1605 (95%), Gaps = 9/1605 (1%)
Strand=Plus/Plus
Query 3 TAAGACCT-AACTCTTAACGAACTTTTAGATAAAAGCTTATAACTGAGAGAGACATAGAT 61
||||| || |||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TAAGA-CTAAACTCTCAACGAACTTTTAGATAAAAGCTTATAATTGAGAGAGACATAGAT 59
Query 62 CGACAAAAGTCTCTATACCTTCTTGTAACGTGGTGGTTAATTAATCATGGCCGATC-AA- 119
||| ||| |||||||||| |||| ||||||||||||| |||||||||||||||||| ||
Sbjct 60 CGATAAAGGTCTCTATACTTTCTGGTAACGTGGTGGTGAATTAATCATGGCCGATCAAAT 119
Query 120 -ATCTCCGGCGAGAAGCCGGCCGGAGTTAATAGATTCGCTCTTCAATGTGCTATCGTCGC 178
||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||
Sbjct 120 TATCTCCGGCGAGAAGCCGGCCAGAGTTAATAGATTTGCTCTTCAATGTGCTATTGTCGC 179
Query 179 CTCCATCGTCTCCATCATCTTTGGTTACGATACTGGTGTTATGAGTGGAGCGATGGTGTT 238
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 180 CTCCATCGTCTCCATCATCTTCGGTTACGATACTGGGGTTATGAGTGGAGCGATGGTGTT 239
Query 239 TATAGAAGAAGATTTGAAGACAAACGACGTTCAAATAGAAGTTCTCACTGGAATTCTCAA 298
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 240 TATAGAAGAAGATTTGAAGACAAACGACGTTCAAATCGAAGTTCTCACCGGAATTCTCAA 299
Query 299 CCTTTGTGCCCTTGTCGGATCATTGCTCGCCGGAAGAACGTCGGACATAATCGGACGGCG 358
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 CCTTTGTGCCCTTGTCGGATCATTGCTAGCCGGAAGAACGTCGGACATAATCGGACGGCG 359
Query 359 TTACACAATCGTCTTGGCCTCAATACTATTCATGTTAGGCTCAATATTGATGGGTTGGGG 418
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 360 TTACACAATCGTCTTGGCCTCAATACTATTCATGTTGGGCTCAATAATGATGGGTTGGGG 419
Query 419 TCCGAATTATCCGGTTCTCCTATCCGGTAGATGCACCGCTGGACTCGGAGTCGGTTTTGC 478
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 TCCAAATTATCCGGTGCTCCTATCCGGTAGATGCACCGCTGGACTCGGAGTTGGTTTTGC 479
Query 479 TCTGATGGTTGCTCCGGTTTACTCTGCCGAGATCGCAACTGCTTCACATAGAGGACTCTT 538
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 TCTGATGGTTGCTCCGGTTTACTCGGCCGAGATCGCAACTGCTTCACATAGAGGACTCTT 539
Query 539 AGCTTCTCTTCCTCACCTTTGTATCAGTATAGGGATTTTACTAGGTTATATCGTGAATTA 598
||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 540 AGCTTCTCTGCCTCACCTTTGTATCAGTATCGGAATTTTACTAGGTTATCTCGTGAATTA 599
Query 599 CTTCTTCTCCAAGTTACCTATGCATATCGGTTGGAGACTCATGCTCGGTATAGCCGCGGT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTTCTTCTCCAAGTTACCTATGCATATCGGTTGGAGACTCATGCTCGGTATAGCCGCGGT 659
Query 659 TCCGTCCCTAGTGCTAGCGTTCGGGATCTTGAAAATGCCGGAATCTCCACGGTGGTTGAT 718
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCCATCCCTAGTGCTAGCGTTCGGGATCTTGAAAATGCCGGAATCTCCACGGTGGTTGAT 719
Query 719 TATGCAAGGCCGTCTTAAGGAAGGCAAGGAGATATTGGAATTGGTATCTAATTCCCCTGA 778
||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 720 TATGCAAGGCCGTCTCAAGGAAGGCAAGGAGATATTGGGATTGGTATCGAATTCCCCTGA 779
Query 779 AGAAGCAGAACTCCGCTTTCAAGACATCAAAGCTGCTGCGGGAATCGACCCGAAATGCGT 838
|||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 780 AGAAGCGGAACTCCGCTTTCAAGACATCAAATCCGCTGCGGGAATCGACCCGAAATGCGT 839
Query 839 AGACGATGTTGTGAAAATGGAGGGTAAGAAGACTCATGGTGAAGGAGTGTGGAAAGAGCT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 840 AGACGATGTTGTGAAAATGGAGGGTAAGAAGACTCATGGTGAAGGAGTGTGGAAAGAACT 899
Query 899 CATTCTAAGACCAACTCCTGCAGTGA-GACGTGTTCTTTTAACTGCTCTTGGGATTCATT 957
|||| |||||||||| || ||||| | |||| ||||||||||| |||||||| |||||||
Sbjct 900 CATTTTAAGACCAACCCCAGCAGT-ACGACGCGTTCTTTTAACCGCTCTTGGTATTCATT 958
Query 958 TCTTCCAACACGCCTCCGGAATCGAAGCAGTGCTTTTATACGGTCCGAGGATCTTTAAGA 1017
|||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||
Sbjct 959 TCTTCCAACACGCCACCGGAATCGAAGCCGTGCTTTTATACGGTCCTCGGATCTTCAAGA 1018
Query 1018 AAGCAGGAATCACGACTAAAGACAAGCTTTTCTTGGTTACTATCGGTGTCGGAATCATGA 1077
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 AAGCAGGAATCACGACTAAAGACAAGCTTTTCTTGGTTACAATCGGTGTCGGAATCATGA 1078
Query 1078 AAACGACGTTTATTTTCACTGCGACTTTATTGTTAGACAAGGTAGGTCGAAGGAAGCTTT 1137
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1079 AAACGACGTTTATTTTCACAGCGACTTTATTGTTAGACAAGGTAGGTCGGAGGAAGCTTT 1138
Query 1138 TGTTGACCAGCGTTGGAGGAATGGTCATTGCGTTGACAATGTTGGGATTTGGGCTTACAA 1197
||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||| |
Sbjct 1139 TGTTGACCAGCGTTGGAGGAATGGTGATTGCGTTGACAATGCTAGGATTTGGGCTTACCA 1198
Query 1198 TGGCCCAAAATGCTGGCGGGAAATTAGCGTGGGCTTTAGTACTGAGCATAGTTGCGGCTT 1257
||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1199 TGGCCCAGAACGCTGGCGGGAAATTAGCGTGGGCTTTGGTACTGAGCATAGTCGCGGCTT 1258
Query 1258 ATAGTTTCGTGGCGT-TTTTCTCTATTGGGCTCGGCCCAATAACTTGGGTCTACAGTTCT 1316
||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1259 ATAGTTTCGTGGC-TGTTTTCTCTATTGGGCTCGGCCCAATAACTTGGGTCTACAGCTCT 1317
Query 1317 GAGGTTTTCCCGTTGAAGCTTAGGGCACAAGGAGCGAGTCTCGGCGTTGCGGTGAACAGA 1376
||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1318 GAGGTTTTCCCGTTGAAACTTCGGGCCCAAGGAGCGAGTCTCGGCGTTGCGGTGAACAGA 1377
Query 1377 GTAATGAACGCCACCGTGTCGATGTCGTTTTTGTCGTTGACTAGTGCGATAACCACCGGT 1436
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GTAATGAACGCCACCGTATCGATGTCGTTTTTGTCGTTGACTAGTGCGATAACCACCGGC 1437
Query 1437 GGAGCTTTCTTTATGTTCGCCGGAGTTGCGGCAGTGGCGTGGAATTTCTTCTTCTTCCTC 1496
|| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1438 GGGGCTTTCTTTATGTTCGCCGGAGTCGCGGCGGTGGCTTGGAATTTCTTCTTCTTCCTC 1497
Query 1497 TTGCCGGAGACGAAAGGAAAATCACTTGAAGAAATCGAAGCGCTTTTTCAAAGAGACGGT 1556
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TTACCGGAGACGAAAGGAAAATCACTTGAAGAAATCGAAGCGCTTTTTCAAAGAGACGGT 1557
Query 1557 GATAAAGTACGCGGCGAAAACGGTGCAGCTTAGCATGATGAATAT 1601
||||||||||||||||||||| | ||||||||||||| |||||||
Sbjct 1558 GATAAAGTACGCGGCGAAAACAGCGCAGCTTAGCATGTTGAATAT 1602
Score = 159 bits (86), Expect = 5e-38
Identities = 103/111 (93%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 1661 TTTAGTTGTACTTTTGTGTGGCTTTTATCAAATTATAAATCAACGGTCAAGATTGACGCA 1720
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1602 TTTAGATGTACTTTTGTGTGGCTTTTATCAAATTATAAATCAACGGTCAAGATCGACGCA 1661
Query 1721 CGCTTTAGTAtttttttCAT-TAACAATTTAAGATCAACGGCTAATACATC 1770
| ||||| |||||||| || || |||||||||||||||||||||||||||
Sbjct 1662 CACTTTATTATTTTTT-CAAGTACCAATTTAAGATCAACGGCTAATACATC 1711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66429387280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5