BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36680.1
Length=1594
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490968 jgi|Araly1|490968|fgenesh2_kg.7__401__AT4G36680.1 2270 0.0
Ahg480760 jgi|Araly1|480760|fgenesh2_kg.3__3461__AT2G18520.1 702 0.0
> Ahg490968 jgi|Araly1|490968|fgenesh2_kg.7__401__AT4G36680.1
Length=1560
Score = 2270 bits (1229), Expect = 0.0
Identities = 1444/1546 (93%), Gaps = 22/1546 (1%)
Strand=Plus/Plus
Query 46 AAAACCCTAAAGGCGTCTCCTTTTCTCGCCACCACTCTCCACAATACCCATTTCTGC-AA 104
|||||||||||||||||| ||||| ||||||||||||||||||| || |||| |||| ||
Sbjct 21 AAAACCCTAAAGGCGTCTTCTTTT-TCGCCACCACTCTCCACAACACTCATTACTGCAAA 79
Query 105 AATGGCTTCTTCTCGTATTTCTCTCCGCCTT-GTTCGCCGATTTGCCTCAGCCGCCGCTG 163
|||||||||||||||||| |||||||| ||| |||||||| ||||||||||||||||| |
Sbjct 80 AATGGCTTCTTCTCGTATCTCTCTCCG-CTTAGTTCGCCGGTTTGCCTCAGCCGCCGCAG 138
Query 164 ACGGTACGACCACCGCTCCCTCTTCAGGCAAAATCTCTGTCTCCAAAGCTAAGTCCACTC 223
| ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 139 ATGGTACAACCACCTCTCCGTCTTCAGGCAAAATCTCTGTCTCCAAAGCTAAGTCCACTC 198
Query 224 TCCGGAAAGAACACGATCCCGACAAAGCTCTTAAGATCTACGCCAATGTCTCCGATCACT 283
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 199 TCCGGAAAGAACACGATCCCGACAAAGCCCTTAAGATCTACGCCAATGTCTCCGATCACT 258
Query 284 CAGCCTCTCCTGTTTCATCTCGCTACGCCCAAGAGCTCACTGTTCGTCGCCTCGCCAAGT 343
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 259 CAGCTTCTCCTGTTTCATCTCGCTATGCTCAAGAGCTCACTGTTCGTCGCCTCGCCAAGT 318
Query 344 GTCGCCGTTTCTCAGACATCGAAACCCTAATTGAATCCCACAAAAATGATCCCAAAATCA 403
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 319 GTCGCCGTTTCTCAGACATCGAAACCCTAATTGAATCCCACAAAAACGATCCCAAAATCA 378
Query 404 AAGAAGAACCTTTCTACTCTACGCTTATCAGATCTTACGGCCAAGCCTCTATGTTTAATC 463
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||
Sbjct 379 AAGAAGAACCTTTCTACTCTACGCTTATCAGATCTTATGGCCGAGCCTCTATGTTTGATC 438
Query 464 ACGCCATGAGAACCTTCGAGCAGATGGATCAATACGGCACACCCAGATCAGCTGTTTCCT 523
||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 439 ACGCCATGAGAACTTTCGAGCAGATGGATCAGTATGGCACACCCAGATCAGCTGTTTCGT 498
Query 524 TCAACGCCTTGCTCAACGCTTGTCTCCATTCCAAGAATTTCGATAAAGTCCCCCAACTGT 583
|||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 499 TCAACGCCTTACTCAACGCCTGTCTTCATTCCAAGAAGTTCGATAAAGTCCCCCAACTGT 558
Query 584 TCGACGAAATTCCTCAGAGGTACAATAAGATCATCCCTGACAAAATCTCTTACGGTATAT 643
|||||||||||||||| ||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 559 TCGACGAAATTCCTCAAAGGTACAATAAAATCGTCCCTGACAAAATCTCTTATGGTATAT 618
Query 644 TGATTAAGTCATACTGTGACTCTGGTACCCCTGAAAAAGCCATTGAGATTATGAGACAGA 703
|||||||||||||||||||||||||| ||||| |||| || |||||||||||||| ||||
Sbjct 619 TGATTAAGTCATACTGTGACTCTGGTTCCCCTCAAAAGGCGATTGAGATTATGAGGCAGA 678
Query 704 TGCAAGGTAAAGGCATGGAAGTTACTACCATTGCTTTCACCACCATTTTGAGTTCATTGT 763
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 679 TGCAAGGTAAAGGCATGGAAGTCACTACCATTGCTTTCACCACCATTTTGAGTTCCTTGT 738
Query 764 ATAAGAAAGGTGAGCTCGAGGTAGCTGATAA-CTTGTGGAATGAGATGGTGAAGAAAGGC 822
||||||||||||| |||||||| || || || ||||||||||||||||||||| ||||||
Sbjct 739 ATAAGAAAGGTGAACTCGAGGTTGCGGA-AAGCTTGTGGAATGAGATGGTGAATAAAGGC 797
Query 823 TGTGAATTGGATAATGCAGCGTATAATGTTCGTATAATGAGTGCTCAAAAGGAAAGCCCT 882
|||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 798 TGTGAATTAGATAATGCAGCGTATAATGTCCGTATTATGAGTGCTCAGAAGGAAAGCCCT 857
Query 883 GAAAGAGTTAAGGAGTTGATTGAAGAAATGAGTAGTATGGGATTGAAACCTGATACGATT 942
|||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||
Sbjct 858 GAAAGAGTTAAGGAGTTGATCGAAGAAATGAGCACTATGGGATTGAAACCCGATACGATT 917
Query 943 AGCTATAACTATCTTATGACTGCGTATTGTGAGAGAGGAATGTTGGACGAAGCTAAGAAA 1002
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 918 AGCTATAACTATCTTATGACTGCTTATTGCGAGAGAGGAATGTTGGATGAAGCTAAGAAA 977
Query 1003 GTGTATGAAGGACTTGAAGGTAACAACTGTGCTCCCAACGCAGCTACTTTTAGGACATTG 1062
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 978 GTGTATGAAGGACTTGAAGGAAACAACTGTGCTCCCAACTCAGCTACTTTTAGGACATTG 1037
Query 1063 ATATTTCATCTTTGTTATAGCCGATTGTACGAGCAAGGCTATGCGATCTTCAAGAAGAGT 1122
||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1038 ATATTTCATCTGTGTTATAGCCGATTGTATGAGCAAGGCTACGCCATCTTCAAGAAGAGT 1097
Query 1123 GTGTATATGCACAAGATTCCAGATTTCAACACTTTGAAGCATTTGGTTGTGGGATTGGTG 1182
||||||||||||||||||||||||||||||||||||||||| |||| || |||||| |||
Sbjct 1098 GTGTATATGCACAAGATTCCAGATTTCAACACTTTGAAGCACTTGGCTGCGGGATTAGTG 1157
Query 1183 GAGAACAAGAAAAGAGATGACGCTAAAGGGTTGATTAGAACGGTGAAGAAGAAATTCCCT 1242
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 GAGAACAAGAAAATAGATGACGCTAAAGGGTTGATTAGAACGGTGAAGAAGAAATTCCCT 1217
Query 1243 CCGAGTTTCTTGAATGCGTGGAAGAAACTCGAGGAGGAACTCGGGCTGTATTCAAAAACC 1302
||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1218 CCGAGTTTCATGAATGCGTGGAAGAAACTTGAGGAGGAACTCGGGCTGTATTCGAAAACC 1277
Query 1303 GATGCTTTTCCATCTTCTGCAAAAGAGGCTGCTGCTGCTTAATAGCTCAAGAGCATTTCG 1362
||||||| ||||||||||||| |||||||||||||| | |||||||||| |||||| ||
Sbjct 1278 GATGCTTCTCCATCTTCTGCACAAGAGGCTGCTGCT--T-AATAGCTCAATAGCATTGCG 1334
Query 1363 ATTGAACATCTTATTTTGTTGCTTGA-------A--GACTTGTTGAAAACTATGATCTAG 1413
||||||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct 1335 ATTGAACATCTTAATTTGTTGCTTGAGCTGTTTAAAGACTTGTTGAAAACTATGATCTAG 1394
Query 1414 TATGCAGGTTTATTTATAAGCTGCTCCTGCATTTTTCT-TTCCT-CATAAATTAGCTTGT 1471
|||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||
Sbjct 1395 TATGCAGGTTTATTTATAAGCTGCTCGTGCATTTTTCTCTTTCTTCATAAATTAGCTTGT 1454
Query 1472 AAAAGCTTGACGGTTT-GTTGTTGGAATCTCTAGAATTCCATAGTCAACAATTTTCAGGT 1530
|||||||| | ||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1455 AAAAGCTTCAAATTTTTGTTGTTGGAATCTCTAGAATTCCAAAGTCAACAATTTTCAGGT 1514
Query 1531 TCATATAGTT-CACTGCTTTGTTCTACACACTTGTGCTTCATGATG 1575
|||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1515 TCATATAGTTTCACTGCTTTGTTCTACACGCTTGTGCTTCATGATG 1560
> Ahg480760 jgi|Araly1|480760|fgenesh2_kg.3__3461__AT2G18520.1
Length=1352
Score = 702 bits (380), Expect = 0.0
Identities = 904/1146 (79%), Gaps = 80/1146 (7%)
Strand=Plus/Plus
Query 184 TCTTCAGGCAAAATCTCTGTCTCCAAAGCTAAGTCCACTCTCCGGAAAGAACACGATCCC 243
||||| ||| |||| || ||||||||||||| |||| ||||| |||| ||||||||
Sbjct 67 TCTTCCGGCGCAATCACTATCTCCAAAGCTAAATCCAAACTCCGCAAAGTCCACGATCCA 126
Query 244 GACAAAGCTCTTA-AGATCTACGCCAAT--GTCTCCGATC-ACTCAGCCTCTCCTGTTTC 299
|||||||| |||| ||| || | ||| |||||| | | |||| | ||||| | ||
Sbjct 127 GACAAAGC-CTTAGCGATTTA--CAAATCCGTCTCC-AACAACTCCTCATCTCCACTCTC 182
Query 300 ATCTCGCTACGCCCA-AGAGCTCACTGTTCGTCGCCTCGCCAAGTGTCGCCGTTTCTCAG 358
|||||||||| ||| |||||||| || | || ||||| || | || || ||||| |
Sbjct 183 CTCTCGCTACG-CCATGGAGCTCACAGTCCAACGTCTCGCTAAATCTCAACGCTTCTCTG 241
Query 359 ACATCGAAACCCTAATTGAATCCCACAAAAATGATCCCAAA-ATCAAAGA-AGA-ACCTT 415
|||| ||| | |||||||| || |||||||| | |||||| |||||| | ||| || ||
Sbjct 242 ACATAGAAGCTCTAATTGAGTCTCACAAAAA-CAACCCAAAGATCAAA-ACAGAGACTTT 299
Query 416 TCTACTCTACGCTTATCAGATCTTACGGCCAAGCCTCTATGTTTAATCACGCCATG-AGA 474
||| |||||| |||||||||||||| || | ||| || |||||| |||| || ||| ||
Sbjct 300 TCT-CTCTACACTTATCAGATCTTATGGACGAGCTTCAATGTTTGATCATGCTATGAAG- 357
Query 475 ACCTTCGAGCAGATGGATCA-ATACGGCACACCCAGATCAGCTGTTTCCTTCAACGCCTT 533
| |||||| |||||||||| || ||| ||||| ||| | | |||||||||||| |||||
Sbjct 358 ATGTTCGAGGAGATGGATCAGAT-CGGGACACCAAGAACCGTTGTTTCCTTCAATGCCTT 416
Query 534 GCTCAAC-GCTTGTCTCCATTCCAAGA-AT-TTCGATAA-AGTCCCCCAACTGTTCGACG 589
||| | |||||||| |||| | || | || || || ||||||||||||||||||||
Sbjct 417 ACTC-GCTGCTTGTCTTCATT-C-TGATTTGTTTGA-AAGAGTCCCCCAACTGTTCGACG 472
Query 590 AAATTCCTCAGAGGTACAATAAGATCA-TCCCTGACAAAATCTCTTACGGTATATTGATT 648
|||||||||||||||| ||||| || | ||| ||| ||| ||||||| ||||| ||||||
Sbjct 473 AAATTCCTCAGAGGTATAATAATATTACTCC-TGATAAAGTCTCTTATGGTATGTTGATT 531
Query 649 AAGTCATACTGTGACTCTGGTACCCCTGAAAAAGCCATTGAGATTATGAGACAGATGCAA 708
||||| || |||||||||||| | ||||||||||| || |||||||||||| | ||| |
Sbjct 532 AAGTCGTATTGTGACTCTGGTTCGCCTGAAAAAGCTATGGAGATTATGAGAGATATGGA- 590
Query 709 GGT-AAAGGCATGGAAGTTACTACCATTGCTTTCACCACCATTTTGAGT-TCATTGTATA 766
||| ||||| |||||||||||| |||||||||||| |||||||| || || ||||| |
Sbjct 591 GGTTAAAGGTGTGGAAGTTACTATCATTGCTTTCACTACCATTTT-AGGATCTTTGTACA 649
Query 767 AGAAAGGTG-AGCTCGAGGTAGCTGATAA-CTTGTGGAATGAGATGGTGAAGAAAGGCTG 824
|||| ||| || |||| ||||| || || |||||||| ||||||||||| ||||||||
Sbjct 650 AGAATGGTTTAG-TCGATGTAGCGGA-AAGCTTGTGGACCGAGATGGTGAATAAAGGCTG 707
Query 825 TGAATTGGATAATGCAGCGTATAATGTTCGTA-TAATGAGTGCT-CAAAAGGAAAG-CCC 881
|||||||||||| | | ||||||||| | | | |||| |||| | || |||||| |||
Sbjct 708 TGAATTGGATAACACTGTTTATAATGTTAG-ACTTATGAATGCTGCGAA-GGAAAGTCCC 765
Query 882 TGAAAGAGTTAAGGAGTTGATTGAAGAAATGAGTAGTATGGGATTGAAACCTGATACGAT 941
||||||||| ||| ||||| ||||||||||||||| | |||||||||||||||||| |
Sbjct 766 -GAAAGAGTTGGGGAATTGATGGAAGAAATGAGTAGTGTAGGATTGAAACCTGATACGGT 824
Query 942 TAGCTATAACTATCTTATGACTGCGTATTGTGAGAGAGGAATGTTGGACGAAGCTAAGAA 1001
||||||||||||||||||||||||||| || | || ||||||| ||| ||||| |||||
Sbjct 825 TAGCTATAACTATCTTATGACTGCGTACTGCGTGAAAGGAATGATGGGTGAAGCCAAGAA 884
Query 1002 AGTGTATGAAGGACTTGAAGGTAACAACTGTGCTCCCAACGCAGCTACTTTTAGGACATT 1061
|||||||||||| ||||| | |||| | |||||||| || || ||||||||
Sbjct 885 AGTGTATGAAGGGCTTGA-G----CAAC----CA---AACGCAGCGACGTTCAGGACATT 932
Query 1062 GATATTTCATCTTTGT-TATA-GCCGATTGTACGAGCAAGGCT-ATGCGATCTTCAAGAA 1118
|||||||||||| ||| || | | | ||||| || ||||| | | || | || |||||
Sbjct 933 GATATTTCATCTGTGTATAAATGG-G-TTGTATGATCAAGGTTTAA-CGGTGTTTAAGAA 989
Query 1119 GAGTGTGTATA-TGCACAAGATTCCAGATTTCAACACTT-TGAAGCATTTGGTTGT-GGG 1175
||||| | || ||||||||||||| |||||||| |||| | ||||||||| || |||
Sbjct 990 GAGTGCG-ATTGTGCACAAGATTCCGGATTTCAAAACTTGT-AAGCATTTGACTGAAGGG 1047
Query 1176 ATTGGTGGAGAACAAGAAAA-GAGATGACGCTAA-AGG-GTTGATTAGAACGGTGAAGAA 1232
|||||| | || || | || | || || || || ||| || | | || || ||||||||
Sbjct 1048 -TTGGTGAAAAATAACAGAATG-GAAGATGC-AAGAGGAGTGGCT-AGGACTGTGAAGAA 1103
Query 1233 GAAATTCCCTCCGAGTTTCTTGAAT-GCGTGGAAGAAACTCGAGGAGGAA-CTCGGGCT- 1289
||||||||||||| |||| | || | |||||||||||| |||||| || || ||| |
Sbjct 1104 GAAATTCCCTCCGCGTTTAGT-AACCGAGTGGAAGAAACTAGAGGAG-AAGCT-GGGTTT 1160
Query 1290 GTATTC 1295
||||||
Sbjct 1161 GTATTC 1166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59725504160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5