BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36690.1
Length=1982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490965 jgi|Araly1|490965|fgenesh2_kg.7__398__AT4G36690.1 2854 0.0
> Ahg490965 jgi|Araly1|490965|fgenesh2_kg.7__398__AT4G36690.1
Length=1827
Score = 2854 bits (1545), Expect = 0.0
Identities = 1712/1790 (96%), Gaps = 21/1790 (1%)
Strand=Plus/Plus
Query 78 GAGAAAGAGATAGAGAGCGTTGATTCCGGCGAAAAGATGTCTGAATTCGAAGATCACGAG 137
|||| |||| |||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 GAGAGAGAGGTAGACAACGTTGATTCCGGCGAAAAGATGACTGAATTCGAAGATCACGAG 60
Query 138 GGAAACGGTACGGTTGCTGACGCGATTTACGAC-GAAGAGAATGGTGGCCGCGACGGCGA 196
||||||||||| |||||||||||| |||||| | |||||||| |||||||||| ||||||
Sbjct 61 GGAAACGGTACTGTTGCTGACGCGCTTTACG-CTGAAGAGAACGGTGGCCGCGGCGGCGA 119
Query 197 AATCGAGGATCAATTGGACTCGAAACCCaagagagaatcgcgtgaccatgaaagagagac 256
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 AATCGAGGATCAATTGGACTCGAAACCTAAGAGAGAATCGCGTGACCATGAAAGAGAGAC 179
Query 257 atcaagaagtaaagatagagaaagagagaagggtcgtgataaggacagagaaagagaCTC 316
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 180 ATCAAGAAGTAAAGATAGAGAAAGAGAGAAGGGTCGTGATAGGGACAGAGAAAGGGACTC 239
Query 317 TGAAGTCTCTCGCCGAAGCAGGGATAGAGATGGAGAGAAAAGCAAGGAGAGGAGTAGAGA 376
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 240 TGAAGTCTCTCGCCGAAGCAGGGATAGAGATGGAGATAAAGGCAAGGAGAGGAGTAGAGA 299
Query 377 CAAAGACAGAGATCATCGTGAGCGTCATCACAGAAGTAGTCGTCACAGGGATCATAGCAG 436
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 GAAAGACAGAG---ATCGTGAGCGTCATCACAGAAGTAGTCGTCACAGGGATCATAGTAG 356
Query 437 GGAGCGTGGTGAAAGAAGAGAACGTGGTGGTAGGGATGATGATGATTACCGTCGAAGCCG 496
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GGACCGTAGTGAAAGAAGAGAACGTGGTGGTAGGGATGATGATGATTACCGTCGAAGCCG 416
Query 497 TGATCGTGACCATGATAGGCGGAGAGATGATAGAGGAGGAAGACGCAGTCGTCGATCTCG 556
||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct 417 TGATCGTGACCATGATAGGCGTAGAGATGATCGAGGAGGTAGACGCAGTCGTCGATCTCG 476
Query 557 ATCTCGTTCAAAGGATAGATCTGAGCGCAGAACAAGGTCACGATCTCCATCGAAAAGTAA 616
||||||||||||||||||||| | | | ||||||||||||||||||||
Sbjct 477 TTCTCGTTCAAAGGATAGATCT-------G----A-G---CGATCTCCATCGAAAAGTAA 521
Query 617 GCAGCGAGTCAGTGGATTCGATATGGCACCTCCAGCCTCTGCAATGTTAGCTGCTGGTGC 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TAAGCGAGTCAGTGGATTCGATATGGCACCTCCAGCCTCTGCAATGTTAGCTGCTGGTGC 581
Query 677 TGCTGTTACAGGCCAAGTTCCTCCCGCTCCACCAACTCTTCCTGGGGCTGGAATGTTTCC 736
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 582 TGCTGTTACAGGTCAAGTTCCTCCCGCACCACCAACTCTTCCTGGGGCTGGAATGTTTCC 641
Query 737 CAACATGTTTCCATTGCCGACTGGACAGTCATTTGGGGGACTCTCTATGATGCCAATTCA 796
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 CAACATGTTTCCGTTGCCGACTGGACAGTCATTTGGGGGACTCTCTATGATGCCAATTCA 701
Query 797 GGCTATGACACAGCAGGCAACTAGACATGCTCGCAGAGTCTATGTCGGTGGGCTTTCCCC 856
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 702 GGCTATGACACAGCAGGCAACTAGGCATGCTCGCAGAGTCTATGTCGGTGGGCTTTCCCC 761
Query 857 TACGGCAAATGAACAGTCTGTGGCTACATTTTTTAGTCAAGTTATGGCTGCTGTTGGTGG 916
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TACGGCAAATGAACAGTCCGTGGCTACATTTTTTAGTCAAGTTATGGCTGCTGTTGGTGG 821
Query 917 AAACACTGCTGGTCCAGGTGATGCAGTTGTTAATGTCTACATAAACCACGAGAAGAAGTT 976
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 TAACACTGCTGGTCCAGGTGATGCAGTTGTTAATGTCTACATAAACCACGAGAAGAAGTT 881
Query 977 TGCTTTTGTGGAGATGCGATCTGTTGAAGAGGCAAGTAACGCTATGTCTTTGGATGGGAT 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TGCTTTTGTGGAGATGCGATCTGTTGAAGAGGCAAGTAACGCTATGTCTTTGGATGGGAT 941
Query 1037 TATATTTGAGGGAGCTCCGGTGAAGGTGAGGAGACCTAGTGACTATAACCCATCTCTAGC 1096
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 942 TATATTTGAGGGAGCTCCAGTGAAGGTGAGGAGACCTAGTGACTATAACCCATCTCTAGC 1001
Query 1097 TGCGACTCTTGGTCCAAGCCAGCCCAGTCCCCATCTAAACTTAGCTGCTGTTGGTCTGAC 1156
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TGCAACTCTTGGTCCAAGCCAGCCCAGTCCCCATCTAAACTTAGCTGCTGTTGGTCTGAC 1061
Query 1157 TCCAGGTGCTTCTGGTGGGCTTGAGGGACCAGATCGTATTTTTGTTGGTGGACTTCCATA 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 TCCAGGTGCTTCTGGTGGGCTTGAGGGACCAGATCGTATTTTTGTTGGTGGACTTCCATA 1121
Query 1217 TTACTTCACGGAATCACAAGTGAGGGAGTTGTTGGAGTCCTTTGGAGGCCTCAAGGGCTT 1276
||||||||| ||||| ||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct 1122 TTACTTCACTGAATCCCAAGTCAGGGAGTTGTTGGAGTCCTTTGGAGCCCTTAAGGGCTT 1181
Query 1277 TGATCTTGTAAAAGATCGAGAAACAGGGAACTCTAAAGGATATGCCTTTTGTGTGTACCA 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 TGATCTTGTAAAAGATCGAGAAACAGGGAACTCTAAAGGATATGCCTTTTGTGTGTACCA 1241
Query 1337 AGATCTTTCTGTTACAGATATCGCGTGCGCTGCCCTAAATGGTATCAAGATGGGAGATAA 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 AGATCTTTCTGTTACAGATATCGCGTGCGCTGCCCTAAATGGTATCAAGATGGGAGATAA 1301
Query 1397 GACTCTTACAGTGAGACGTGCCAACCAGGGAACAATGCTACAAAAGCCTGAACAAGAGAA 1456
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1302 GACTCTTACAGTGAGACGTGCCAACCAGGGAACAATGCAACCAAAGCCTGAACAAGAGAG 1361
Query 1457 CGTATTATTGCATGCACAGCAGCAAATAGCTTTTCAGAGGGTTATGTTACAGCCTGGTGC 1516
||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1362 CGTATTATTGCATGCGCAGCAGCAAATTGCTTTTCAGAGGATTATGTTACAGCCTGGTGC 1421
Query 1517 AGTGGCAACCACTGTGGTGTGTCTGACTCAAGTTGTTACTGAGGATGAGCTTAGAGATGA 1576
| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 AATGGCAACAACTGTGGTATGTCTGACTCAAGTTGTTACTGAGGATGAGCTTAGAGATGA 1481
Query 1577 TGAGGAGTATGGAGATATAATGGAAGACATGAGACAGGAAGGCGGAAAGTTTGGTGCTTT 1636
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1482 CGAGGAGTATGAAGATATAATGGAAGACATGAGACAAGAAGGCGGAAAGTTTGGTGCTTT 1541
Query 1637 GACCAATGTTGTGATTCCGCGTCCAAGCCCCAATGGTGAGCCAGTGGCAGGCCTTGGCAA 1696
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1542 GACCAATGTTGTGATTCCGCGTCCAAGCCCCAATGGTGAGCCAGTGCCTGGCCTTGGCAA 1601
Query 1697 GGTGTTTTTGAAGTATGCCGATACAGATGGCTCGACTAGGGCAAGATTCGGGATGAATGG 1756
|||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct 1602 GGTGTTTTTGAAGTATGCCGATACAGATGGATCGACGAGGGCAAGAACCGGGATGAATGG 1661
Query 1757 TAGGAAATTTGGAGGAAATGAAGTCGTTGCAGTGTATTACCCTGAAGACAAGTTTGAACA 1816
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 TAGGAAATTCGGAGGAAATGAAGTCGTTGCAGTGTATTACCCTGAAGACAAGTTTGAACA 1721
Query 1817 GGGTGATTATGGAGCCTGATCACTT-CTTTGTTTGCTTTCTATTACTTAA 1865
|||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1722 GGGTGATTATGGAGCCTGATGACTTTCTTTGTTTGCTTTCTATTACTTAA 1771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74504519220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5