BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36700.1
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490964 jgi|Araly1|490964|fgenesh2_kg.7__397__AT4G36700.1 2475 0.0
> Ahg490964 jgi|Araly1|490964|fgenesh2_kg.7__397__AT4G36700.1
Length=1741
Score = 2475 bits (1340), Expect = 0.0
Identities = 1519/1605 (95%), Gaps = 13/1605 (1%)
Strand=Plus/Plus
Query 16 aaaaaaCAGAGCACAATGACTAGATTTGCGGTATTGCCACTCTCTG---TTCTTCTTCTC 72
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1 AAAAAACAGAGCACAATGACTAGATTTACGGTATTGCCACTCTCTGTTCTTCTTCTTCTC 60
Query 73 GTTCTCTTGTTCCTCTGCACTGAGTCGTTGGCTAAGTCGGAGGAGTCTGAAGAATACGAC 132
|||||||||||||||||||||||||| ||||||||||||||||| || |||||| |||||
Sbjct 61 GTTCTCTTGTTCCTCTGCACTGAGTCATTGGCTAAGTCGGAGGATTCGGAAGAAAACGAC 120
Query 133 GTCGCTGTGCCTTCATGTTGCGGGTTTTCGTCTCCTCTTCTGATTAAGAAAGATCAATGG 192
|| | ||||| || || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TTCCCCGTGCCGTCGTGCTGCGGGTTTTCGTCTCCTCTTCTGATAAAGAAAGATCAATGG 180
Query 193 AAACCAATCTTCGAGACGAAGTTTGGACAGATCTCAACCGTTCAAATCGGCAATGGATGC 252
||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 181 AAACCAATCTTCGAGTCGAAGTTCGGACAGATCTCAACCGTACAAATCGGCAATGGATGC 240
Query 253 GGTGGAATGGGACCTTACAAGATACATTCCATAACGTTGGAGCCAAACACAATTTTGCTC 312
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 241 GGTGGAATGGGACCTTACAAAATACATTCCATAACGTTGGAGCCAAACACGCTTTTGCTG 300
Query 313 CCTCTTCTTCTTCATTCCGACATGGTCTTCTTCGTTGACTCTGGAAGTGGGATTCTGAAT 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCTCTTCTTCTTCATTCCGACATGGTCTTCTTCGTTGACTCTGGAAGTGGGATTCTGAAT 360
Query 373 TGGGTTGACGAGGAAGCGAAGAGTACCGAGATCAGACTAGGAGACGTTTACAGGCTACGT 432
|||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct 361 TGGGTTGACGAGGAAGCGAAGAGTTCTGAGATCAGACTAGGGGACGTTTACAGGCTACGT 420
Query 433 CCCGGTTCGGTTTTCTACTTACAGAGCAAACCGGTGGATATCTTCCTTGGAACCAAACTT 492
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 421 CCCGGTTCGGTTTTCTACTTACAGAGCAAACCGGTTGATATTTTCCTTGGAACCAAACTT 480
Query 493 AAGCTTTACGCAATCTTCTCCAACAACGATGAGTGTTTACATGATCCTTGCTTTGGTGCC 552
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 AGGCTTTACGCAATCTTCTCCAACAACGAGGAGTGTTTACATGATCCTTGCTTTGGTGCG 540
Query 553 TATTCGAGTATCACAGATCTAATGTTTGGTTTTGATGAGACAATTCTCCAGTCAGCTTTT 612
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TATTCAAGTATTACAGATCTAATGTTTGGTTTTGATGAGACAATTCTCCAGTCAGCTTTT 600
Query 613 GGGGTTCCTGAGGGGATTATAGAGCTGATGAGGAACCGTACGAAGCCACCATTGATCGTG 672
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 GGGGTTCCCGAGGGGATTATAGAGCTGATGAGGAATCGTACGAAGCCACCATTGATCGTG 660
Query 673 AGTGA-GACGCTTTGCACACCAGGTGTGGCCAACACTTGGCAGCTCCAACCGCGATTACT 731
||||| | ||||||| ||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 661 AGTGATG-TGCTTTGCCCACCAGGTGTGGCTAACACATGGCAGCTCCAACCGCGATTACT 719
Query 732 -AAAGCTCTTTGCTGGAAGTGCAGACTTGGTGGATAACaagaagaagaaagagaagaaag 790
||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 720 CAAA-TTCTTTGCTGGAAGCGCAGATTTGGTGGATAACAAGAAGAAGAAAGAGAAGAAGG 778
Query 791 agaagaaggagaaggtgaagaaagcgaagaCATTCAATGTTTTCGAATCTGAACCGGATT 850
||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 779 AGAAGAAAGAGAAGGTGAAGAAAGCAAAGACATTCAATGTTTTCGAATCCGAACCGGATT 838
Query 851 TCGAGAGCCCCTACGGTCGTACTATAACGATTAACAGGAAGGATCTGAAAGTTTTAAAAG 910
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 839 TCGAGAGCCCTTACGGTCGTACTATAACGATTAATAGGAAGGATCTGAAAGTTTTAAAGG 898
Query 911 GCTCAATGGTTGGAGTTTCCATGGTGAATCTCACTCAAGGATCGATGATGGGACCGCACT 970
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 899 GCTCAATGGTTGGAGTTTCCATGGTGAATCTCACTCAAGGGTCGATGATGGGACCACACT 958
Query 971 GGAATCCATGGGCTTGCGAGATTTCGATTGTATTGAAAGGAGCAGGAATGGTTAGGGTTC 1030
||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| |
Sbjct 959 GGAATCCATGGGCTTGCGAGATTTCAATTGTGTTGAAAGGAGCAGGAATGGTTAAGGTGC 1018
Query 1031 TTAGGTCTTCGATATCATCAAACACATCATCAGAGTGTAAGAACGTGAGGTTTAAAGTAG 1090
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1019 TTAGGTCTTCGATATCATCAAACTCATCATCAGAGTGTAAGAACGTGAGGTTTAAGGTAG 1078
Query 1091 AGGAAGGAGATATTTTCGCAGTTCCACGGTTACATCCAATGGCTCAAATGTCTTTCAACA 1150
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1079 AAGAAGGAGATATTTTCGCAGTTCCACGGTTACATCCAATGGCTCAAATGTCATTCAACA 1138
Query 1151 ATGACTCGTTAGTGTTCGTTGGGTTTACTACTTCAGCTAAGAATAACGAGCCGCAGTTCT 1210
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 ATGGCTCGTTAGTGTTCGTTGGGTTTACTACTTCAGCTAAGAATAACGAGCCGCAGTTCT 1198
Query 1211 TAGCCGGGGAGGACTCGGCTTTGCGGATGCTTGACCGGCAAGTATTGGCTGCATCGCTTA 1270
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1199 TAGCCGGGGAGGACTCGGCTTTGCGGATGCTTGACCGGCAAGTATTGGCTGCGTCGCTTA 1258
Query 1271 ATGTGAGTAGTGTGACGATTGATGGATTGTTGGGAGCTCAGAAGGAAGCTGTTATCTTGG 1330
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACGTGAGTAGTGTGATGATTGATGGATTGTTGGGAGCTCAGAAGGAAGCTGTTATCTTGG 1318
Query 1331 AATGTCATTCTTGTGCggaaggagagatagagaagcttaaggtggagatagagaggaaga 1390
|||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||||
Sbjct 1319 AATGTCCTTCTTGTGCGGAAGGAGAGATGGAGAAGCTTAAGGTGGAGACGGAGACGAAGA 1378
Query 1391 aaatagatgatgagaggaagaggagacatgatgaaaggaagaaagaagaagaagaggcga 1450
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1379 AAATAGATGATGAGAGGAAGAGGAGAGATGATGAAAGGAAGAAAGAAGAAGAAGAGGCGA 1438
Query 1451 agagagaagaggaagagaggaggaaacgtgaagaagaagaagagaagaagCGGTGGCCAC 1510
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1439 AGAAAGAAGAGGAAGAGAGGAGGAAACGTGAAGAAGAAGAAGAGAGGAAGCGGTGGCCAC 1498
Query 1511 CTCAACAACCACCACAAGAAGAAGAAC-T-TAGGGAACGGCAACTACCGATGGAGAAAGA 1568
||||||| ||||||||| ||||||||| | ||| ||| |||||||||||||||||||||
Sbjct 1499 CTCAACAGCCACCACAACAAGAAGAACCTCTAG--AACCGCAACTACCGATGGAGAAAGA 1556
Query 1569 ATGGGAAATGGAAGGTGAAGAGGAGA-GTTAAGCCGGAGGAGTAA 1612
||||||||||| |||||||||||||| || |||||| || |||||
Sbjct 1557 ATGGGAAATGGCAGGTGAAGAGGAGATGT-AAGCCGTAGAAGTAA 1600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69171884920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5