BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G36700.1 Length=1842 Score E Sequences producing significant alignments: (Bits) Value Ahg490964 jgi|Araly1|490964|fgenesh2_kg.7__397__AT4G36700.1 2475 0.0 > Ahg490964 jgi|Araly1|490964|fgenesh2_kg.7__397__AT4G36700.1 Length=1741 Score = 2475 bits (1340), Expect = 0.0 Identities = 1519/1605 (95%), Gaps = 13/1605 (1%) Strand=Plus/Plus Query 16 aaaaaaCAGAGCACAATGACTAGATTTGCGGTATTGCCACTCTCTG---TTCTTCTTCTC 72 ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 1 AAAAAACAGAGCACAATGACTAGATTTACGGTATTGCCACTCTCTGTTCTTCTTCTTCTC 60 Query 73 GTTCTCTTGTTCCTCTGCACTGAGTCGTTGGCTAAGTCGGAGGAGTCTGAAGAATACGAC 132 |||||||||||||||||||||||||| ||||||||||||||||| || |||||| ||||| Sbjct 61 GTTCTCTTGTTCCTCTGCACTGAGTCATTGGCTAAGTCGGAGGATTCGGAAGAAAACGAC 120 Query 133 GTCGCTGTGCCTTCATGTTGCGGGTTTTCGTCTCCTCTTCTGATTAAGAAAGATCAATGG 192 || | ||||| || || |||||||||||||||||||||||||| ||||||||||||||| Sbjct 121 TTCCCCGTGCCGTCGTGCTGCGGGTTTTCGTCTCCTCTTCTGATAAAGAAAGATCAATGG 180 Query 193 AAACCAATCTTCGAGACGAAGTTTGGACAGATCTCAACCGTTCAAATCGGCAATGGATGC 252 ||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 181 AAACCAATCTTCGAGTCGAAGTTCGGACAGATCTCAACCGTACAAATCGGCAATGGATGC 240 Query 253 GGTGGAATGGGACCTTACAAGATACATTCCATAACGTTGGAGCCAAACACAATTTTGCTC 312 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 241 GGTGGAATGGGACCTTACAAAATACATTCCATAACGTTGGAGCCAAACACGCTTTTGCTG 300 Query 313 CCTCTTCTTCTTCATTCCGACATGGTCTTCTTCGTTGACTCTGGAAGTGGGATTCTGAAT 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CCTCTTCTTCTTCATTCCGACATGGTCTTCTTCGTTGACTCTGGAAGTGGGATTCTGAAT 360 Query 373 TGGGTTGACGAGGAAGCGAAGAGTACCGAGATCAGACTAGGAGACGTTTACAGGCTACGT 432 |||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| Sbjct 361 TGGGTTGACGAGGAAGCGAAGAGTTCTGAGATCAGACTAGGGGACGTTTACAGGCTACGT 420 Query 433 CCCGGTTCGGTTTTCTACTTACAGAGCAAACCGGTGGATATCTTCCTTGGAACCAAACTT 492 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 421 CCCGGTTCGGTTTTCTACTTACAGAGCAAACCGGTTGATATTTTCCTTGGAACCAAACTT 480 Query 493 AAGCTTTACGCAATCTTCTCCAACAACGATGAGTGTTTACATGATCCTTGCTTTGGTGCC 552 | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 481 AGGCTTTACGCAATCTTCTCCAACAACGAGGAGTGTTTACATGATCCTTGCTTTGGTGCG 540 Query 553 TATTCGAGTATCACAGATCTAATGTTTGGTTTTGATGAGACAATTCTCCAGTCAGCTTTT 612 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TATTCAAGTATTACAGATCTAATGTTTGGTTTTGATGAGACAATTCTCCAGTCAGCTTTT 600 Query 613 GGGGTTCCTGAGGGGATTATAGAGCTGATGAGGAACCGTACGAAGCCACCATTGATCGTG 672 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 601 GGGGTTCCCGAGGGGATTATAGAGCTGATGAGGAATCGTACGAAGCCACCATTGATCGTG 660 Query 673 AGTGA-GACGCTTTGCACACCAGGTGTGGCCAACACTTGGCAGCTCCAACCGCGATTACT 731 ||||| | ||||||| ||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 661 AGTGATG-TGCTTTGCCCACCAGGTGTGGCTAACACATGGCAGCTCCAACCGCGATTACT 719 Query 732 -AAAGCTCTTTGCTGGAAGTGCAGACTTGGTGGATAACaagaagaagaaagagaagaaag 790 ||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||| | Sbjct 720 CAAA-TTCTTTGCTGGAAGCGCAGATTTGGTGGATAACAAGAAGAAGAAAGAGAAGAAGG 778 Query 791 agaagaaggagaaggtgaagaaagcgaagaCATTCAATGTTTTCGAATCTGAACCGGATT 850 ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 779 AGAAGAAAGAGAAGGTGAAGAAAGCAAAGACATTCAATGTTTTCGAATCCGAACCGGATT 838 Query 851 TCGAGAGCCCCTACGGTCGTACTATAACGATTAACAGGAAGGATCTGAAAGTTTTAAAAG 910 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 839 TCGAGAGCCCTTACGGTCGTACTATAACGATTAATAGGAAGGATCTGAAAGTTTTAAAGG 898 Query 911 GCTCAATGGTTGGAGTTTCCATGGTGAATCTCACTCAAGGATCGATGATGGGACCGCACT 970 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 899 GCTCAATGGTTGGAGTTTCCATGGTGAATCTCACTCAAGGGTCGATGATGGGACCACACT 958 Query 971 GGAATCCATGGGCTTGCGAGATTTCGATTGTATTGAAAGGAGCAGGAATGGTTAGGGTTC 1030 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| | Sbjct 959 GGAATCCATGGGCTTGCGAGATTTCAATTGTGTTGAAAGGAGCAGGAATGGTTAAGGTGC 1018 Query 1031 TTAGGTCTTCGATATCATCAAACACATCATCAGAGTGTAAGAACGTGAGGTTTAAAGTAG 1090 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 1019 TTAGGTCTTCGATATCATCAAACTCATCATCAGAGTGTAAGAACGTGAGGTTTAAGGTAG 1078 Query 1091 AGGAAGGAGATATTTTCGCAGTTCCACGGTTACATCCAATGGCTCAAATGTCTTTCAACA 1150 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1079 AAGAAGGAGATATTTTCGCAGTTCCACGGTTACATCCAATGGCTCAAATGTCATTCAACA 1138 Query 1151 ATGACTCGTTAGTGTTCGTTGGGTTTACTACTTCAGCTAAGAATAACGAGCCGCAGTTCT 1210 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 ATGGCTCGTTAGTGTTCGTTGGGTTTACTACTTCAGCTAAGAATAACGAGCCGCAGTTCT 1198 Query 1211 TAGCCGGGGAGGACTCGGCTTTGCGGATGCTTGACCGGCAAGTATTGGCTGCATCGCTTA 1270 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1199 TAGCCGGGGAGGACTCGGCTTTGCGGATGCTTGACCGGCAAGTATTGGCTGCGTCGCTTA 1258 Query 1271 ATGTGAGTAGTGTGACGATTGATGGATTGTTGGGAGCTCAGAAGGAAGCTGTTATCTTGG 1330 | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 ACGTGAGTAGTGTGATGATTGATGGATTGTTGGGAGCTCAGAAGGAAGCTGTTATCTTGG 1318 Query 1331 AATGTCATTCTTGTGCggaaggagagatagagaagcttaaggtggagatagagaggaaga 1390 |||||| ||||||||||||||||||||| ||||||||||||||||||| |||| ||||| Sbjct 1319 AATGTCCTTCTTGTGCGGAAGGAGAGATGGAGAAGCTTAAGGTGGAGACGGAGACGAAGA 1378 Query 1391 aaatagatgatgagaggaagaggagacatgatgaaaggaagaaagaagaagaagaggcga 1450 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1379 AAATAGATGATGAGAGGAAGAGGAGAGATGATGAAAGGAAGAAAGAAGAAGAAGAGGCGA 1438 Query 1451 agagagaagaggaagagaggaggaaacgtgaagaagaagaagagaagaagCGGTGGCCAC 1510 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1439 AGAAAGAAGAGGAAGAGAGGAGGAAACGTGAAGAAGAAGAAGAGAGGAAGCGGTGGCCAC 1498 Query 1511 CTCAACAACCACCACAAGAAGAAGAAC-T-TAGGGAACGGCAACTACCGATGGAGAAAGA 1568 ||||||| ||||||||| ||||||||| | ||| ||| ||||||||||||||||||||| Sbjct 1499 CTCAACAGCCACCACAACAAGAAGAACCTCTAG--AACCGCAACTACCGATGGAGAAAGA 1556 Query 1569 ATGGGAAATGGAAGGTGAAGAGGAGA-GTTAAGCCGGAGGAGTAA 1612 ||||||||||| |||||||||||||| || |||||| || ||||| Sbjct 1557 ATGGGAAATGGCAGGTGAAGAGGAGATGT-AAGCCGTAGAAGTAA 1600 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69171884920 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5