BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36710.1
Length=1886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490963 jgi|Araly1|490963|fgenesh2_kg.7__396__AT4G36710.1 2422 0.0
> Ahg490963 jgi|Araly1|490963|fgenesh2_kg.7__396__AT4G36710.1
Length=1745
Score = 2422 bits (1311), Expect = 0.0
Identities = 1630/1777 (92%), Gaps = 50/1777 (3%)
Strand=Plus/Plus
Query 25 AAAAAACGGAATCATATACAAATCATTGTCAATCAGA--TTGTTTCGTGTATA-AATATT 81
||||||||||||||||||||||||||||||||||||| || ||||||||||| | ||||
Sbjct 1 AAAAAACGGAATCATATACAAATCATTGTCAATCAGATTTTTTTTCGTGTATACATTATT 60
Query 82 ATTCTGTAAAACCAAACAAACCCGGATCAGACACGGTTACCAAAGTTGAAATC------- 134
||||||| |||||||| |||||||||| | |||||||| ||||||||||||||
Sbjct 61 ATTCTGT-AAACCAAATAAACCCGGATTATACACGGTTCCCAAAGTTGAAATCTTTTTTT 119
Query 135 TCTTTATTTGCACGCACTCACTCAAAGATAAAAAGCTTACCACTCTCACCTTTCAAAAGC 194
| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTTTTTTTGCACGCACTCCCTCAAAGATAAAAAGCTTACCACTCTCACCTTTCAAAAGC 179
Query 195 CCCGCCACCTTCTTCTTCTCCCACACACaaagaaaaaagacagaaagaaaaaaaCttttt 254
||||||||||||||||||| | ||||| || |||| ||| ||
Sbjct 180 CCCGCCACCTTCTTCTTCT--C-CACAC-----------AC--AAAG----AAA----TT 215
Query 255 ttCTTTTCGTTAAAGGCTCCACCTTTC-T-TTCTTCTTAAC-ACACAACACATGAAAATC 311
|||||||| |||||| | |||||||| | ||||||||||| ||||||||||||||||||
Sbjct 216 TTCTTTTC--TAAAGGTTTCACCTTTCTTCTTCTTCTTAACAACACAACACATGAAAATC 273
Query 312 CCTGCATCATCTCCTCAAGACACGACcaacaacaacaacaacaCTAATAGTACTGATAGT 371
|| || || |||||||||||||||| | |||||||||||||||||| ||||||||||||
Sbjct 274 CCAGCTTCTTCTCCTCAAGACACGA-C--CAACAACAACAACACTAACAGTACTGATAGT 330
Query 372 AATCACTTATCAATGGACGAACATGTCATGCGTTCAATGGATTGGGATTCCATCATGAAA 431
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 331 AATCACTTATCAATGGACGAACATGTCATGCGTTCTATGGATTGGGATTCTATCATGAAA 390
Query 432 GAATTGGAGCTTGATGACGATTCTGCTCCTAACTCACTT-AAAACCGGTTTCACCACAAC 490
||||| ||||||||||| ||||| |||||||| || || ||||||||||| || |||||
Sbjct 391 GAATTAGAGCTTGATGATGATTCAGCTCCTAATTC-TTTGAAAACCGGTTTTACTACAAC 449
Query 491 CA-CA--ACAGATTCTACTATTTTGCCTCTTTACGCCGTCGATTCAAATCTCCCTGGCTT 547
|| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 CACCACCACTGATTCTACTATTTTGCCTCTTTACGCCGTCGATTCAAATCTCCCTGGCTT 509
Query 548 TCCCGATCAGATTCAACCGTCGGATTTCGAATCGTCTTCCGATGTTTATCCTGGTCAGAA 607
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 510 TCCCGATCAGATTCAACCGTCCGATTTCGAATCATCATCCGATGTTTATCCTGGTCAGAA 569
Query 608 CCAAACAACTGGGTACGGTTTTAATTCTCTTGATAGTGTCGACAATGGAGGATTTGATTT 667
||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 570 CCAAACAACCGGGTACGGGTTCAATTCTCTTGATAGTGTCGACAATGGAGGATTTGATTT 629
Query 668 CATTGAAGATCTCATCCGAGTCGTGGATTGTGTTGAATCGGACGAGTTACAACTCGCTCA 727
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 630 CATTGAAGATCTCATCCGAGTCGTGGATTGCGTTGAATCGGACGAGTTACAACTCGCTCA 689
Query 728 GGTGGTTTTATCACGGCTTAATCAACGCTTGAGATCTCCGGCGGGTAGACCGTTACAGAG 787
|||| ||||||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct 690 GGTGCTTTTATCACGGCTTAATCAGCGGTTGAGATCTCCGGCGGGTAGAGCGTTACAGAG 749
Query 788 AGCTGCGTTTTACTTTAAGGAAGCTCTCGGTTCGTTTTTAACCGGATCAAACCGGAATCC 847
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 750 AGCTGCGTTTTACTTCAAGGAAGCTCTCGGTTCGCTTTTAACCGGATCAAACCGGAATCC 809
Query 848 AATCCGGTTATCTTCTTGGTCCGAGATTGTTCAGAGGATCCGAGCGATTAAGGAATATTC 907
||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 810 GATCCGGTTATCTTCTTGGTCCGATATTGTTCAGAGGATCCGAGCGATCAAAGAATATTC 869
Query 908 CGGGATTTCTCCGATCCCTCTCTTCTCTCATTTCACGGCGAATCAAGCGATACTCGATTC 967
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 870 CGGGATTTCTCCGATCCCTCTCTTCTCCCATTTCACGGCGAATCAAGCGATACTCGATTC 929
Query 968 GTTGAGCTCGCAGTCGTCTTCTCCGTTTGTTCACGTGGTGGATTTTGAGATTGGATTCGG 1027
|||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 930 TTTGAGCTCGCAGTCGTCTTCTCCGTTTGTTCACGTGGTGGATTTCGATATCGGATTCGG 989
Query 1028 TGGCCAATACGCATCGCTTATGAGAGAAATCACTGAGAAATCTGTAAGCGGTGGATTTTT 1087
|||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||
Sbjct 990 TGGCCAATACGCATCGCTCATGAGAGAAATCACTGAGAAATCTGTTAGCGGCGGGTTTTT 1049
Query 1088 AAGAGTTACGGCAGTGGTGGCGGAGGAGTGCGCCGTAGAGACGCGACTAGTGAAAGAAAA 1147
|||||||||||| ||||||||||| ||||||||||| |||||||| || |||||||||||
Sbjct 1050 AAGAGTTACGGCGGTGGTGGCGGAAGAGTGCGCCGTCGAGACGCGGCTGGTGAAAGAAAA 1109
Query 1148 CCTAACTCAATTCGCGGCGGAGATGAAAATTCGTTTCCAGATTGAGTTTGTGCTGATGAA 1207
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1110 CCTAACTCAATTCGCGGCGGAGATGAAAATTCGTTTTCAGATTGAATTCGTGCTGATGAA 1169
Query 1208 GACTTTTGAGATGTTATCTTTCAAAGCGATTAGGTTTGTTGAGGGGGAGAGGACCGTCGT 1267
|||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 1170 GACTTTCGAGATGTTATCTTTCAAAGCGATTAGGTTCGTTGAGGGAGAGAGAACCGTCGT 1229
Query 1268 TTTGATTTCCCCGGCGATATTTCGTCGTCTAAGTGGAATCACTGATTTTGTTAACAATTT 1327
||||||||| |||||||||||||||||| | ||||||||||||||||| || |||||| |
Sbjct 1230 TTTGATTTCTCCGGCGATATTTCGTCGTGTGAGTGGAATCACTGATTTCGTGAACAATCT 1289
Query 1328 ACGGAGAGTATCACCTAAGGTCGTTGTATTCGTGGATAGTGAAGGATGGACGGAGATCGC 1387
|||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||||||||
Sbjct 1290 ACGGAGAGTATCACCTAAAGTCGTCGTTTTCGTCGATAGCGAAGGATGGACGGAGATCGC 1349
Query 1388 CGGATCTGGATCATTCCGGCGAGAGTTTGTTAGCGCTCTTGAGTTCTACACGATGGTGCT 1447
|||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 1350 CGGATCTGGATCGTTCCGGCGTGAGTTTGTTAGTGCTCTTGAGTTTTACACGATGGTGCT 1409
Query 1448 GGAGTCGCTCGACGCTGCAGCTCCTCCCGGAGATTTGGTGAAGAAGATAGTGGAAGCGTT 1507
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1410 GGAGTCGCTCGACGCTGCAGCTCCTCCCGGAGATTTGGTGAAGAAGATCGTTGAAGCGTT 1469
Query 1508 CGTTCTACGACCGAAGATCTCCGCTGCGGTAGAAACGGCGGCTGACAGGAGACACACCGG 1567
|| || ||||| ||||||||||| ||||| |||||||| ||||| ||||||||||||||
Sbjct 1470 TGTGCTGCGACCAAAGATCTCCGCGGCGGTGGAAACGGCTGCTGATAGGAGACACACCGG 1529
Query 1568 CGAAATGACTTGGCGGGAAGCGTTT-TGCGCCGCCGGGATGAGGCCGATACAGCTAAGCC 1626
|| ||||| ||||||||||| ||| ||||||||||| || |||||||||||||||||||
Sbjct 1530 TGAGATGACATGGCGGGAAGC-TTTCTGCGCCGCCGGAATAAGGCCGATACAGCTAAGCC 1588
Query 1627 AGTTCGCCGACTTTCAAGCTGAGTGTTTATTGGAGAAAGCGCAAGTTAGAGGATTCCACG 1686
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1589 AGTTCGCCGACTTTCAAGCTGAGTGTTTATTGGAGAAGGCGCAAGTTAGAGGATTCCACG 1648
Query 1687 TGGCGAAACGACAAGGAGAATTGGTGCTGTGCTGGCATGGAAGAGCACTTGTTGCCACAT 1746
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 1649 TGGCGAAACGACAAGGAGAATTGGTGCTGTGCTGGCACGGAAGGGCACTTGTTGCCACGT 1708
Query 1747 CAGCTTGGCGGTTTTAGATAAACCGGGTTTGGTTTAA 1783
|||||||||||||||||||||||||||||||||||||
Sbjct 1709 CAGCTTGGCGGTTTTAGATAAACCGGGTTTGGTTTAA 1745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70847855700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5