BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G36720.1 Length=802 Score E Sequences producing significant alignments: (Bits) Value Ahg944205 jgi|Araly1|944205|scaffold_700434.1 909 0.0 > Ahg944205 jgi|Araly1|944205|scaffold_700434.1 Length=665 Score = 909 bits (492), Expect = 0.0 Identities = 599/647 (93%), Gaps = 21/647 (3%) Strand=Plus/Plus Query 1 ATGAGCGGGTTTGCTTCACAGATTCCATCCATGGCGCTTCTTGGATCTGGAC-TCACCGG 59 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 22 ATGAGCGGGTTTGCTTCACAGATTCCATCCATGGCGCTTCTTGGATCTGG-CATCACCGG 80 Query 60 CGAGGTTGGGTTGCGTGTATTGTTCTCTCCACTTAGTTCCAATATCGTACTTCGTACAGC 119 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 81 CGAGGTTGGGTTGCGTGTATTGCTCTCTCCACTTAGTTCCAATATCGTACTTCGTACAGC 140 Query 120 ATGCTGCTCCATTGGCATCGGTTTGCCTGTGTACTCTACCTTCAAGGCAATTGAGAGTGG 179 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 141 ATGCTGCTCCATTGGCATCGGGTTGCCTGTGTACTCTACCTTCAAGGCAATTGAGAGTAG 200 Query 180 AGATGAGAATGAACAACA-AAAGATGCTTATTTACTGGGCAGCTTATGGTTCTTTCAGCC 238 |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 201 AGATGAGAATGAACAACAGAAA-ATGCTTATTTACTGGGCAGCTTATGGTTCTTTCAGCC 259 Query 239 TTGTTGAAGTGTTCACGGACAAGATCATTTCCTGGTTCCCGCTGTACTATCATGTGAAGT 298 |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 260 TTGTTGAAGTATTTACGGACAAGATCATTTCTTGGTTCCCGCTGTACTATCATGTGAAGT 319 Query 299 TTGCGTTCCTCGTCTGGCTTCAACTCCCAACTGTTGAGGGATCAAAACAGATATACAACA 358 |||||||||| |||||||||||||||||||| || |||||||||||||| ||||| |||| Sbjct 320 TTGCGTTCCTTGTCTGGCTTCAACTCCCAACAGTCGAGGGATCAAAACAAATATATAACA 379 Query 359 ACCAGATCCGTCCTTTCCTCTTACGACACCAAGCTAGAGTGGACCAACT-TGTGGATGGT 417 ||||||| |||||||||||| ||||||||||||||||||| |||| ||| | ||||||| Sbjct 380 ACCAGATTCGTCCTTTCCTCCTACGACACCAAGCTAGAGTTGACCGACTCT-TGGATGGA 438 Query 418 GTATATGGGGAAATGGTGAAGGTCGTTAGGTCACACCAAGGAGAAATACGGTTTGTCCGA 477 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 439 GTATATGAAGAAATGGTGAAGGTCGTTAGGTCACACCAAGGAGAAATACGGTTTGTCCGA 498 Query 478 GCAATGATTGCCAAAATCTTGGGATCAGT--C-AACGAGGATGCACCAC--G---A-C-- 526 ||||||||| ||||||||||||||||| | || |||| |||||||| | | | Sbjct 499 TCAATGATTGTCAAAATCTTGGGATCAGCAGCCAATGAGGTTGCACCACCAGGCCAACGA 558 Query 527 -TAGGAGAAATAGCAAATGGTAGCCCCGTTT---CAGAAACAAACTCGGATTCAGAATCC 582 |||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 559 CTAGGAGAAATAGCAAATGATAGCCCCGAACAAGCAGAAACAAACTCGGATTCAGAATCC 618 Query 583 GATTCCAATCACGAAGACTAATAAAACAAAGTGTAATCGTAGCTTTT 629 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 619 GATTCCAATCACGAAGACTAATAAAACAAAGTGTAATCGTAGCTTTT 665 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29621506509 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5