BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36720.1
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944205 jgi|Araly1|944205|scaffold_700434.1 909 0.0
> Ahg944205 jgi|Araly1|944205|scaffold_700434.1
Length=665
Score = 909 bits (492), Expect = 0.0
Identities = 599/647 (93%), Gaps = 21/647 (3%)
Strand=Plus/Plus
Query 1 ATGAGCGGGTTTGCTTCACAGATTCCATCCATGGCGCTTCTTGGATCTGGAC-TCACCGG 59
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 22 ATGAGCGGGTTTGCTTCACAGATTCCATCCATGGCGCTTCTTGGATCTGG-CATCACCGG 80
Query 60 CGAGGTTGGGTTGCGTGTATTGTTCTCTCCACTTAGTTCCAATATCGTACTTCGTACAGC 119
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 81 CGAGGTTGGGTTGCGTGTATTGCTCTCTCCACTTAGTTCCAATATCGTACTTCGTACAGC 140
Query 120 ATGCTGCTCCATTGGCATCGGTTTGCCTGTGTACTCTACCTTCAAGGCAATTGAGAGTGG 179
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 141 ATGCTGCTCCATTGGCATCGGGTTGCCTGTGTACTCTACCTTCAAGGCAATTGAGAGTAG 200
Query 180 AGATGAGAATGAACAACA-AAAGATGCTTATTTACTGGGCAGCTTATGGTTCTTTCAGCC 238
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 201 AGATGAGAATGAACAACAGAAA-ATGCTTATTTACTGGGCAGCTTATGGTTCTTTCAGCC 259
Query 239 TTGTTGAAGTGTTCACGGACAAGATCATTTCCTGGTTCCCGCTGTACTATCATGTGAAGT 298
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 260 TTGTTGAAGTATTTACGGACAAGATCATTTCTTGGTTCCCGCTGTACTATCATGTGAAGT 319
Query 299 TTGCGTTCCTCGTCTGGCTTCAACTCCCAACTGTTGAGGGATCAAAACAGATATACAACA 358
|||||||||| |||||||||||||||||||| || |||||||||||||| ||||| ||||
Sbjct 320 TTGCGTTCCTTGTCTGGCTTCAACTCCCAACAGTCGAGGGATCAAAACAAATATATAACA 379
Query 359 ACCAGATCCGTCCTTTCCTCTTACGACACCAAGCTAGAGTGGACCAACT-TGTGGATGGT 417
||||||| |||||||||||| ||||||||||||||||||| |||| ||| | |||||||
Sbjct 380 ACCAGATTCGTCCTTTCCTCCTACGACACCAAGCTAGAGTTGACCGACTCT-TGGATGGA 438
Query 418 GTATATGGGGAAATGGTGAAGGTCGTTAGGTCACACCAAGGAGAAATACGGTTTGTCCGA 477
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 GTATATGAAGAAATGGTGAAGGTCGTTAGGTCACACCAAGGAGAAATACGGTTTGTCCGA 498
Query 478 GCAATGATTGCCAAAATCTTGGGATCAGT--C-AACGAGGATGCACCAC--G---A-C-- 526
||||||||| ||||||||||||||||| | || |||| |||||||| | | |
Sbjct 499 TCAATGATTGTCAAAATCTTGGGATCAGCAGCCAATGAGGTTGCACCACCAGGCCAACGA 558
Query 527 -TAGGAGAAATAGCAAATGGTAGCCCCGTTT---CAGAAACAAACTCGGATTCAGAATCC 582
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 559 CTAGGAGAAATAGCAAATGATAGCCCCGAACAAGCAGAAACAAACTCGGATTCAGAATCC 618
Query 583 GATTCCAATCACGAAGACTAATAAAACAAAGTGTAATCGTAGCTTTT 629
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 GATTCCAATCACGAAGACTAATAAAACAAAGTGTAATCGTAGCTTTT 665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29621506509
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5