BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36730.1
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944204 jgi|Araly1|944204|scaffold_700433.1 1530 0.0
Ahg944205 jgi|Araly1|944205|scaffold_700434.1 135 7e-31
> Ahg944204 jgi|Araly1|944204|scaffold_700433.1
Length=981
Score = 1530 bits (828), Expect = 0.0
Identities = 904/941 (96%), Gaps = 4/941 (0%)
Strand=Plus/Plus
Query 301 AGT-AGTAAGCTTATAAAACAATGGGAACGAGCGAAGACAAGATGCCATTTAAGACTACC 359
||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 3 AGTAAGTAAGCTTAT-ACACAATGGGAACGAGCGAAGACAAGATGCCATTTAAGCCTACC 61
Query 360 AAACCAACATCTTCGGCTCAGGAAGTTCCTCCCACACCGTATCCAGATTGG-CAAAATTC 418
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 62 AAACCAACATCTTCGGCTCAGGAAGTTCCTCCCACACCGTATCCAGATTGGTC-AAATTC 120
Query 419 AATGCAGGCTTATTATGGCGGAGGAGGTACTCCAAATCCTTTTTTCCCATCCCCAGTTGG 478
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 AATGCAGGCTTATTATGGCGGAGGAGGTACGCCAAATCCTTTTTTCCCATCCCCAGTTGG 180
Query 479 ATCTCCTAGTCCTCACCCCTATATGTGGGGTGCTCAACACCATATGATGCCGCCTTATGG 538
|||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 ATCTCCTAGTCCTCACGCTTATATGTGGGGCGCTCAACACCATATGATGCCGCCTTATGG 240
Query 539 CACCCCAGTTCCGTACCCAGCAATGTATCCCCCGGGGGCAGTCTATGCTCATCCTAGCAT 598
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GACCCCAGTTCCGTACCCAGCAATGTATCCCCCGGGAGCAGTCTATGCTCATCCTAGCAT 300
Query 599 GCCCATGCCTCCTAATTCTGGTCCTACCAACAAGGAGCCTGCGAAGGACCAAGCTTCTGG 658
|||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||||||||
Sbjct 301 GCCCATGCCTCCTAATTCTGGTCCAACCAACAAGGAGACTGTGAATGACCAAGCTTCTGG 360
Query 659 CAAGAAGTCAAAGGGGAACTCGaaaaaaaaGGCTGAAGGAGGTGATAAAGCGCTCTCTGG 718
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 CAAGAAGTCAAAGGGGAACTCGAAAAAAAAGGGTGAAGGAGGTGATAAAGCGCTCTCTGG 420
Query 719 TTCAGGGAACGATGGTGCCTCTCATAGTGATGAAAGTGTCACAGCGGGTTCATCTGATGA 778
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCAGGGAACGATGGTGTCTCTCATAGTGATGAAAGTGTCACAGCGGGTTCATCTGATGA 480
Query 779 AAATGATGAGAATGCCAATCAACAGGAACAGGGTTCAATTCGAAAGCCAAGCTTTGGACA 838
|||||| ||||||||||||||||||||||| |||||| || ||||||| |||||||||||
Sbjct 481 AAATGAAGAGAATGCCAATCAACAGGAACAAGGTTCAGTTAGAAAGCCGAGCTTTGGACA 540
Query 839 GATGCTTGCTGACGCAAGTTCTCAAAGTACGACTGGTGAAATCCAAGGTTCGGTGCCCAT 898
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 GATGCTTGCGGACGCAAGTTCTCAAAGTACTACTGGTGAAATCCAAGGTTCGGTGCCCAT 600
Query 899 GAAGCCGGTAGCCCCGGGGACTAATCTGAATATCGGGATGGACTTATGGTCTTCCCAAGC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAAGCCGGTAGCCCCGGGGACTAATCTGAATATCGGGATGGACTTATGGTCTTCCCAAGC 660
Query 959 TGGTGTACCAGTGAAGGATGAACGAGAGCTCAAGCGGCAGAAGAGGAAACAATCTAACCG 1018
||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 661 TGGTGTACCTGTGAAGGATGAACGAGAGCTCAAGAGGCAGAAGAGGAAACAGTCTAACCG 720
Query 1019 TGAATCCGCTAGGCGGTCTAGATTGCGGAAGCAGGCCGAATGCGAACAACTTCAACAAAG 1078
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 721 TGAATCTGCTAGGCGGTCTAGATTGCGGAAGCAGGCGGAATGCGAACAACTTCAACAGAG 780
Query 1079 AGTAGAGAGTTTGTCGAACGAGAATCAAAGCCTGAGAGATGAGCTACAGAGACTCTCAAG 1138
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
Sbjct 781 AGTAGAGAGTTTGTCGAATGAGAATCAAAGCCTGAGAGATGAGCTACAAAGACTCTCATG 840
Query 1139 CGAATGTGATAAGCTCAAGTCTGAGAACAACTCAATCCAGGATGAGTTGCAGAGAGTACT 1198
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 841 CGAATGTGAAAAGCTCAAGTCTGAGAACAACTCAATCCAGGATGAGTTGCAGAGAGTGCT 900
Query 1199 TGGAGCAGAGGCTGTAGCTAATCTAGAACAGAATGCTGCTG 1239
||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CGGAGCAGAGGCTGTAGCTAATCTAGAACAGAATGCTGCTG 941
> Ahg944205 jgi|Araly1|944205|scaffold_700434.1
Length=665
Score = 135 bits (73), Expect = 7e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 1424 AAAAGCTACGATTACACTTTGTTTTATTAGTCTTCGTGATTGGAATCGGATTCTGAATCC 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 AAAAGCTACGATTACACTTTGTTTTATTAGTCTTCGTGATTGGAATCGGATTCTGAATCC 606
Query 1484 GAGTTTGTTTCTG 1496
|||||||||||||
Sbjct 605 GAGTTTGTTTCTG 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56373562600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5