BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36740.1
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490960 jgi|Araly1|490960|fgenesh2_kg.7__393__AT4G36740.1 1214 0.0
> Ahg490960 jgi|Araly1|490960|fgenesh2_kg.7__393__AT4G36740.1
Length=811
Score = 1214 bits (657), Expect = 0.0
Identities = 765/814 (94%), Gaps = 19/814 (2%)
Strand=Plus/Plus
Query 4 ACTTCTCACATTTCATAAAAAGTGAGACAAATTAAAGAC--AG--AGAGAGATCCAAGAA 59
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 1 ACTTCTCACATTTCATAAAAAGTGAGACAAATT-AAGACAGAGATAGAGAGATCCAAGAA 59
Query 60 CATGAACTACACGGTGGATGATCAGAACATGGCTTTTATCTCTCAACTGTACCCTGATGT 119
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CATGAACCACACGGTGGATGATCAGAACATGGCTTTTATCTCTCAACTGTACCCTGATGT 119
Query 120 CTACACTCAGATAGT---ACAACCAGGAGAAGTGAAGCAGCCGAAGCGGAGGAGGAAGAA 176
|||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 CTACACTCAGTTAGTACCACAACCAGGAGAAGTGAAGCAACCGAAGCGGAGGAGGAAGAA 179
Query 177 GACCAAAGGATCCG-TGGCTTCCGCAGATGGAGGCAACGGTTTGTTTAGAAAGAGGAAGC 235
|| |||||| || ||||||||| ||| ||| ||||| |||||||||| ||||||||||
Sbjct 180 GAGTAAAGGA-GCGTTGGCTTCCGGAGACGGAAGCAACAGTTTGTTTAGGAAGAGGAAGC 238
Query 236 TGACCGATGAACAAGTGAACATGTTGGAGATGAGTTTTGGGGATGAACACAAACTTGAGT 295
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 239 TAACCGATGAACAAGTGAACATGTTGGAGATGAGTTTTGGTGATGAGCACAAACTTGAGT 298
Query 296 CGGAGAGGAAAGATAGACTTGCGGCAGAGCTAGGGCTTGACCCTCGTCAAGTTGCCGTTT 355
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 299 CGGAGAGGAAAGATAGACTTGCGGCGGAGCTAGGGCTTGACCCTCGTCAAGTTGCCGTTT 358
Query 356 GGTTTCAGAACCGTCGCGCACGGTGGAAGAACAAAAGGCTCGAGGAAGAGTACAATAAAC 415
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 359 GGTTTCAGAACCGTCGTGCACGGTGGAAGAACAAAAGGCTCGAGGAGGAGTACAATAAAC 418
Query 416 TCAAGAACTCACATGATAACGTCGTTGTCGACAAGTGCCGACTTGAATCTGAGGTTATTC 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCAAGAACTCACATGATAACGTCGTTGTCGACAAGTGCCGACTTGAATCTGAGGTTATTC 478
Query 476 AGCTCAAAGAACAACTCTATGATGCAGAGAGGGAAATCCAAAGATTAGCAGAAAGAGTAG 535
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 AGCTCAAAGAACAACTCTATGACGCAGAGAGGGAAATCCAAAGATTAGCAGAAAGAGTAG 538
Query 536 AAGGAGGCTCAAGCAACAGTCCAATTTCGTCTTCCGTTTCCGTCGAAGCTAATGAAACGC 595
||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||
Sbjct 539 AAGTAGGCTCAAGCAACAGTCCGATTTCGTCTTCTGTTTCCGTCGAAGCTAATGAAGCGC 598
Query 596 CATTTTTTGGAGACTATAAAGTCGGAGATGATGGCGATGACTATGATCACTTGTTTTATC 655
||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 599 CATTTTTCGGAGACTATAAAGTCGGAGATGATGGCGATGACTATGATAACTTCTTTTATC 658
Query 656 CGGTGCCGGAAAATAGTTACATCGATGAAGCGGAATGGATGAGTCTATACATATAAA-TT 714
|||| |||||||| |||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 659 CGGTACCGGAAAACAGTTACATCGATGAAGCGGAATGGATGAATCTATACATATAAAATT 718
Query 715 ACTAGCTTAATGT-A-AT---A-TTATATCAAGTTAGTATCGTGAATTAGGGAAGCAT-A 767
||||||||||||| | || | ||||||||||||||||| ||||||||||||||||| |
Sbjct 719 ACTAGCTTAATGTGATATTTTAATTATATCAAGTTAGTATTGTGAATTAGGGAAGCATTA 778
Query 768 TTTCTAAGTAAATTTACTAGATTATATAACTGTT 801
||| |||||||||||| |||||||||||||||||
Sbjct 779 TTT-TAAGTAAATTTAGTAGATTATATAACTGTT 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29583383592
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5