BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36750.1
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944202 jgi|Araly1|944202|scaffold_700431.1 1334 0.0
> Ahg944202 jgi|Araly1|944202|scaffold_700431.1
Length=868
Score = 1334 bits (722), Expect = 0.0
Identities = 821/867 (95%), Gaps = 14/867 (2%)
Strand=Plus/Plus
Query 50 AATTTGGGAGAGAATATTCTCGATGGGGAAAGGAGGAGGTTGTGTTCCGAGCAAGAAGAA 109
||||| || |||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 AATTT-GG-GAGAATTTTCTCGATGGGGAAAGGAGGAGGATGTGTTCCGAGCAAGAAGAA 58
Query 110 GAAG-C--CG------GCCACCACCGGCGATGGTCCCGGAATCGATGATGATAACGACGC 160
|||| | || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 59 GAAGCCGTCGTCTCTCGCCACCACCGGCGATGGTCCCGGAATCGACGATGATAACGACGC 118
Query 161 TACTAATGCTCCGATCCAAATTGACGATGATCAAACCACCATTGACGGCGATCGAACAAC 220
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 119 AACTAATGCTCCGATCCAAATTGATGATGATCAAACCACCATTGACGGCGATCGAACAAC 178
Query 221 GGCGACGAATACTGGAGGAACAACAACACCAGCGATTACTACTACGGCTGCTAAGATCTC 280
|||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 179 GGCGACGAATACTGCAGGAACAACAACACCAGCGATT--T-CTACGGCTGCTAAGATCTC 235
Query 281 GTCACCGCTCAAGATCTTCGTCGTGTTCTATTCGATGTACGGACATGTGGAGAGCTTAGC 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GTCACCGCTCAAGATCTTCGTCGTGTTCTATTCGATGTACGGACATGTGGAGAGCTTAGC 295
Query 341 GAAGAGGATGAAAAAGGGAGTGGATAGCGTCGAAGGAGTGGAGGCGACGTTGTACAGAGT 400
|||||| ||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 296 GAAGAGAATGAAGAAGGGAGTGGATAGTGTCCAAGGAGTGGAGGCGACGCTGTACAGAGT 355
Query 401 TCCGGAGACGCTTTCGCAGGAGGTTGTTGAGCAGATGAAGGCGCCGGTTAAGGATTTGGA 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TCCGGAGACGCTTTCGCAGGAGGTTGTTGAGCAGATGAAGGCGCCGGTTAAGGATTTGGA 415
Query 461 GATTCCGGAGATTACGGCGGCGGAATTGACGGCGGCTGATGGATTTCTGTTTGGATTTCC 520
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||
Sbjct 416 GATTCCGGAGATTACGGCGGCGGAATTGGCGGCGGCTGATGGATTTTTGTTTGGGTTTCC 475
Query 521 GACTAGGTATGGTTGTATGGCTGCGCAGATGAAGGCGTTTTTTGATTCGACGGGATCATT 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GACTAGGTATGGTTGTATGGCTGCGCAGATGAAGGCGTTTTTTGATTCGACGGGATCATT 535
Query 581 GTGGAAGGAGCAGAGTCTTGCTGGTAAGCCTGCTGGATTCTTTGTGAGCACTGGCACTCA 640
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 536 GTGGAAGGAGCAGAGTCTCGCTGGTAAGCCTGCTGGATTCTTTGTGAGTACTGGGACTCA 595
Query 641 AGGAGGTGGCCAAGAGACCACTGCATGGACAGCAATCACACAGCTTGTGCACCATGGGAT 700
||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 596 AGGAGGTGGTCAAGAGACTACTGCATGGACAGCAATCACACAGCTGGTGCACCACGGGAT 655
Query 701 GCTATTTGTACCAATAGGCTACACATTTGGAGCTGGAATGTTCAAGATGGACTCGATACG 760
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 656 GCTGTTTGTACCCATAGGCTACACATTTGGAGCTGGAATGTTCAAGATGGACTCGATCCG 715
Query 761 TGGAGGCTCTCCTTATGGAGCAGGTGTGTTCGCTGGTGATGGGTCAAGAGAAGCAACAGA 820
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 716 GGGAGGCTCACCTTATGGAGCTGGTGTGTTTGCTGGTGATGGCTCAAGAGAAGCAACAGA 775
Query 821 AACAGAATTGGCTCTTGCTGAACATCAAGGAAACTACATGGCTGCAATAGTCAAAAGACT 880
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 776 AACAGAATTGGCTCTTGCTGAACATCAAGGAAACTACATGGCTGCAATAGTCAAGAGACT 835
Query 881 TGCTCAACCTTaaaacaaaaacaaaaa 907
||||||||||||||| ||||| |||||
Sbjct 836 TGCTCAACCTTAAAAGAAAAAAAAAAA 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42316437870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5