BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36770.1
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490956 jgi|Araly1|490956|fgenesh2_kg.7__389__AT4G36770.1 2270 0.0
> Ahg490956 jgi|Araly1|490956|fgenesh2_kg.7__389__AT4G36770.1
Length=1425
Score = 2270 bits (1229), Expect = 0.0
Identities = 1361/1426 (95%), Gaps = 3/1426 (0%)
Strand=Plus/Plus
Query 1 AAGAAAGCATATCACTaaaaaaaCTC-TGAGGACCATGGAACTTCACGGAGCTCTAGTGG 59
||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 AAGAAAGCAGATTACTAAAAAAACTCTTGAGGACCATGGAACTTCACGGAGCTCTAGTGG 60
Query 60 CTAGTCCGGGCATGGGACATGCCGTACCCATCTTAGAACTCGGTAAACATCTCCTGAACC 119
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAGTCCGGGTATGGGACATGCCGTACCCATCTTAGAACTCGGTAAACATCTCCTGAACC 120
Query 120 ACCACGGGTTCGACCGTGTCACTGTCTTCCTAGTCACAGACGATGTCTCACGTTCGAAAT 179
| |||| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||
Sbjct 121 ATAACGGTTTCGACCGTATCACCGTCTTCCTAGTCACAGACGATATCTCACGTTCGAAAT 180
Query 180 CCCTAATTGGAAAAACGTTGATGGAAGAAGATCCAAAATTTGTGATCAGGTTTATTCCAC 239
|| ||||||| |||||||| | |||||||||||||||||||||||||| |||||||| ||
Sbjct 181 CCTTAATTGGCAAAACGTTAAAGGAAGAAGATCCAAAATTTGTGATCAAGTTTATTCAAC 240
Query 240 TCGATGTTTCGGGTCAAGATCTGAGTGGTTCACTATTGACTAAACTAGCAGAGATGATGA 299
| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 241 TTGATGTTTCGGGTCAAGATCTGAGCGGTTCTCTTTTGACTAAACTAGCAGAGATGATGA 300
Query 300 GGAAGGCATTACCAGAGATCAAGTCTTCAGTCATGGAGTTAGAACCGCGGCCTAGGGTTT 359
|||||||| |||| ||||||| |||| ||||||||||||||||||| |||||||||||||
Sbjct 301 GGAAGGCAGTACCGGAGATCAGGTCTGCAGTCATGGAGTTAGAACCACGGCCTAGGGTTT 360
Query 360 TCGTAGTTGACTTGTTGGGCACGGAAGCTTTAGAGGTGGCTAAGGAGCTTGGGATCATGA 419
| |||||||||||||||||||| |||||||||| |||||||| ||||||| ||||||||
Sbjct 361 TTGTAGTTGACTTGTTGGGCACAGAAGCTTTAGTGGTGGCTAGGGAGCTTCAGATCATGA 420
Query 420 GAAAACATGTTCTGGTTACTACCAGTGCTTGGTTTCTAGCTTTTACGGTTTATATGGCGA 479
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 421 GAAAACATGTTCTGGTTACTACCAGTGCTTGGTTTCTAGCTTTCACGGTTTATATGGCGA 480
Query 480 GTCTTGACAAACAGGAGTTGTATAAGCAGTTGAGTAGCATAGGAGCATTGCTTATACCCG 539
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTCTTGACAAGCAGGAGTTGTATAAGCAGTTGAGTAGCATAGGAGCATTGCTTATACCCG 540
Query 540 GATGCAGCCCGGTTAAGTTTGAGCGGGCTCAAGATCCGAGAAAATATATTCGGGAACTCG 599
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 541 GATGCAGCCCGGTTAAGTTTGAGCGGGCTCAAGATCCGAGTAAATATATTCGGGAACTCG 600
Query 600 CTGAGTCTCAGCGTATTGGGGATGAGGTGATAACCGCAGATGGGGTGTTTGTGAATACGT 659
| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 601 CCGAGTCTCAGCGAATTGGGGCTGAGGTGATAACCGCAGATGGGGTCTTTGTGAATACGT 660
Query 660 GGCACAGTCTGGAGCAAGTGACCATCGGGTCTTTCTTGGATCCAGAGAATCTCGGTCGGG 719
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 661 GGCACAGTCTGGAGCAAGTGACGATCGGGTCTTTCCTGGATCCAGAGAATCTCGGTCGGG 720
Query 720 TTATGAGAGGAGTGCCGGTTTATCCTGTTGGACCGCTGGTTAGACCAGCAGAACCAGGTT 779
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 721 TTATGAGAGGAGTGCCCGTTTATCCTGTTGGACCGCTGGTTAGACCAGCAGAACCGGGTT 780
Query 780 TGAAACATGGCGTGCTGGACTGGCTTGACTTACAACCCAAAGAGTCAGTGGTTTATGTTT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGAAACATGGCGTGCTGGACTGGCTTGACTTACAACCCAAAGAGTCAGTGGTTTATGTTT 840
Query 840 CTTTTGGGAGTGGTGGGGCACTAACCTTCGAGCAGACAAACGAGCTGGCTTACGGTTTGG 899
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 841 CTTTTGGGAGTGGTGGGGCACTAACCGCCGAGCAGACGAACGAGCTGGCTTACGGTTTGG 900
Query 900 AGCTGACTGGCCACAGATTTGTTTGGGTAGTCAGACCACCGGCTGAAGACGACCCATCGG 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 901 AGCTGACTGGCCACAGATTTGTTTGGGTAGTCAGACCACCGGCTGAAGACGACCCATCTG 960
Query 960 CATCAATGTTCGACAAGACCAAGAATGAGACAGAACCTCTCGATTTCTTACCCAACGGGT 1019
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 961 CATCAATGTTCGACAAGACCAAGAATGAGACAGAACCACTCGATTTCTTACCCAAAGGGT 1020
Query 1020 TTCTAGACCGAACCAAAGACATCGGTTTGGTGGTCCGTACATGGGCACCACAAGAAGAGA 1079
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 1021 TTCTAGACCGGACCAAAGACATCGGTTTGGTGGTCCGGACATGGGCCCCACAAGAGGAGA 1080
Query 1080 TTCTGGCACACAAGTCAACAGGAGGGTTTGTGACTCACTGCGGATGGAACTCAGTTTTGG 1139
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1081 TTCTGGCACACAAGTCAACAGGAGCGTTTGTGACTCACTGCGGATGGAACTCAGTTTTGG 1140
Query 1140 AGAGTATTGTGAATGGTGTGCCAATGGTAGCTTGGCCGTTGTACTCAGAGCAGAAGATGA 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1141 AGAGTATTGTGAATGGTGTGCCAATGGTAGCTTGGCCGTTGTACTCAGAGCAAAAGATGA 1200
Query 1200 ACGCGA-GGATGGTTTCTGGGGAGCTAAAGATTGCGTTGCAGATTAATGTTGCAGATGGG 1258
|||| | ||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1201 ACGC-ATGGATGGTTTCTGGGGAGCTAAAGATTGCGTTGCGGGTTAATGTTGCAGATGGG 1259
Query 1259 ATTGTAAAGAAGGAGGTGATAGCtgaaatggtgaagagagtgatggatgaagaagaagga 1318
|||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1260 ATTGTAAAGAAGGAAGAGATAGTTGAAATGGTGAAGAGAGTGATGGATGAAGAAGAAGGA 1319
Query 1319 aaagagatgagaaagaatgttaaggaactgaagaagacagcagaagaagCTCTCAACATG 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1320 AAAGAGATGAGAAAGAATGTTAAGGAACTGAAGAAGACAGCAGAAGAAGCTCTCAAGAAG 1379
Query 1379 ACTCACATTCCATCTGCTTACTTCACCTAAAACTAATTAGCAAAAA 1424
| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1380 AGTCACATTCCATCTGCTTCCTTCACCTAAAACTAATTAGCAAAAA 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55345125985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5