BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36780.1
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944199 jgi|Araly1|944199|scaffold_700428.1 1448 0.0
> Ahg944199 jgi|Araly1|944199|scaffold_700428.1
Length=996
Score = 1448 bits (784), Expect = 0.0
Identities = 906/965 (94%), Gaps = 7/965 (1%)
Strand=Plus/Plus
Query 134 TTCAATGGCCGCCggaggaggaggaggaggaggaggaTCATCGTCGGGACGTACTCCGAC 193
||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 17 TTCAATGGCGGCC---GGAGGAGGAGGAGGAGGAGGATCATCGTCGGGACGAACTCCGAC 73
Query 194 GTGgaaagagagagagaacaataagaagagagaaagaagaagaagagCCATCACTGCTAA 253
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 74 GTGGAAAGAGAGAGAGAACAATAAGAAGAGGGAAAGAAGAAGAAGAGCCATCACTGCTAA 133
Query 254 GATTTACTCTGGTCTTAGAGCTCAAGGTAACTATAAGCTTCCTAAGCACTGCGATAACAA 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 GATTTACTCTGGTCTTAGAGCTCAAGGTAACTATAAGCTTCCTAAGCACTGCGATAACAA 193
Query 314 CGAGGTTCTTAAAGCTCTCTGTCTCGAAGCTGGTTGGATCGTCGAAGACGATGGCACCAC 373
|||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 194 CGAGGTTCTTAAAGCTCTCTGTCTTGAAGCTGGTTGGATCGTCGAAGACGACGGTACCAC 253
Query 374 TTATCGCAAGGGGTTTAAGCCACCAGCATCAGATATTTCAGGAACTCCTACAAACTTCAG 433
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 TTATCGCAAGGGTTTTAAGCCACCAGCATCAGATATTTCAGGAACTCCTACAAACTTCAG 313
Query 434 CACAAATTCATCAATCCAACCAAGTCCACAATCATCAGCTTTTCCAAGTCCTGCACCTTC 493
||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 314 CACTAATTCTTCAATCCAACCAAGTCCACAGTCATCTGCTTTTCCAAGTCCTGCGCCTTC 373
Query 494 GTACCACGGAAGTCCAGTCTCATCATCCTTCCCGAGTCCATCTCGCTATGACGGAAACCC 553
|||||||||||||| || |||||||||||||||||||||||||||| || ||||| ||
Sbjct 374 TTACCACGGAAGTCCCGTTTCATCATCCTTCCCGAGTCCATCTCGCTGCGATGGAAATCC 433
Query 554 TTCTTCATACCTTCTTCTTCCGTTCCTACACAACATCGCTTCTTCGATTCCTGCTAACCT 613
|||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 434 TTCTTCGTACCTTCTCCTTCCGTTCCTACACAACATCGCTTCTTCTATTCCTGCAAACCT 493
Query 614 TCCACCTCTTAGAATATCCAACAGTGCGCCTGTGACTCCTCCGTTGTCATCTCCTACTTC 673
||| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 494 TCCGCCGCTTAGAATTTCCAACAGTGCGCCTGTGACTCCTCCGTTGTCTTCTCCTACTTC 553
Query 674 TCGTGGTTCGAAGCGGAAACTTACTTCAGAGCAATTACCAAATGGCGGGTCTTTACACGT 733
||||||||| ||||||||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct 554 TCGTGGTTCAAAGCGGAAACTCACTTCAGAACAATTACCGAATGGTGGGTCTTTACACGT 613
Query 734 TTTGAGACATCCGCTTTTCGCTATCTCTGCTCCATCTAG----ACTCGTCGTGCTGGTCA 789
|||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 614 TTTGAGGCATCCGCTTTTCGCTATCTCAGCTCCATCTAGTCCTACTCGTCGTGCTGGTCA 673
Query 790 CCAAACGCCACCTACAATACCGGAATGTGATGAGTCCGAGGAGGATTCGATCGAGGATTC 849
|||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 674 CCAAACACCACCTACAATACCGGAATGTGATGAGTCCGAGGAAGATTCGATAGAGGATTC 733
Query 850 AGGAAGGTGGATCAATTTCCAATCTACTGCTCCTACTTCACCAACATTTAACCTTGTTCA 909
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 734 AGGAAGGTGGATCAATTTCCAATCTACAGCTCCTACTTCACCAACATTCAATCTTGTTCA 793
Query 910 GCAAACTTCTATGGCCATTGATATGAAAAGGTCAGACTGGGGAATGTCCGGAATGAATGG 969
|||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||
Sbjct 794 GCAAACATCTATGGCCATTGATATGAAAAGATCAGATTGGGGAATGTCGGGAATGAACGG 853
Query 970 GAGAGGGGCAGAGTTTGAGTTTGAGAATGGAACAGTTAAGCCGTGGGAAGGCGAAATGAT 1029
||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 854 GAGAGTTACAGAGTTTGAGTTCGAGAATGGAACAGTCAAGCCATGGGAAGGCGAAATGAT 913
Query 1030 TCATGAAGTTGGCGTAGAAGATCTCGAACTCACTCTCGGTGGCACTAAAGCCAGATGCTG 1089
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 914 TCATGAAGTTGGCGTAGAAGATCTCGAACTCACTCTCGGTGGCACTAAAGCCCGATGCTG 973
Query 1090 AAAAA 1094
|||||
Sbjct 974 AAAAA 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52602628345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5