BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36790.1
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888385 jgi|Araly1|888385|Al_scaffold_0007_371 2289 0.0
> Ahg888385 jgi|Araly1|888385|Al_scaffold_0007_371
Length=1470
Score = 2289 bits (1239), Expect = 0.0
Identities = 1393/1470 (95%), Gaps = 0/1470 (0%)
Strand=Plus/Plus
Query 189 ATGGGTCATGCTCGAACTCGTACCGGTATCATCTCCGTCGCTTTTAAATTCTTCAGGTCT 248
||||| | ||||||| ||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 1 ATGGGCCGTGCTCGACCTCGTTCCGGTTTCATCTCCGTCGCTTTTAAATTCTTCCGGTCT 60
Query 249 CTGTTCCCTCGCCATCACCGTACTAACAGCATGAAGATAAAAACAGGAACGTTTTTGGGG 308
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 CTGTTCCCTCGCAATCACCGTACTAATAGCATGAAGATAAAAACAGGAACGTTTTTGGGT 120
Query 309 GTTTCGATATCATTGATTCTTATAAACTTAGCTGCGATCATGGAACGTGCAGACGAGAAT 368
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GTTTCGATATCATTGATTCTTATAAACTTAGCTGCGATCATGGAACGAGCAGACGAGAAT 180
Query 369 CTATTGCCTTCGGTTTATAAAGAAGTGAGTGAAGCATTTAACGCAGGACCATCAGATTTA 428
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTATTACCGTCGGTTTATAAAGAAGTGAGTGAAGCATTTAACGCAGGACCATCAGATTTA 240
Query 429 GGCTACTTAACATTCGTTAGAAACTTTGTTCAAGGACTTGCATCACCATTAGCAGGAGTT 488
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 241 GGCTACTTAACATTCGTTAGAAACTTTGTTCAAGGACTTGCTTCTCCATTAGCAGGAGTT 300
Query 489 CTTGTCATTACCTATGATCGTCCCATTGTTCTTGCAATAGGTACTTTCTGTTGGGCTTTA 548
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 CTTGTCATTACTTATGATCGTCCCATTGTTCTTGCAATTGGTACTTTCTGTTGGGCTTTA 360
Query 549 TCAACTGCTGCAGTTGGAGCCAGCAGCTACTTCATTCAGGTTGCTTTATGGAGAGCAGTG 608
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TCTACTGCTGCAGTTGGAGCCAGCAGTTACTTCATTCAGGTTGCTTTATGGAGAGCAGTG 420
Query 609 AATGGTTTTGGATTGGCAATTGTTATACCCGCGCTTCAATCGTTTATTGCAGATAGTTAT 668
||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 421 AATGGGTTTGGATTGGCAATTGTTATACCGGCGCTTCAGTCGTTTATCGCAGATAGTTAC 480
Query 669 AAGGATGGTGCGAGAGGAGCTGGTTTCGGAATGTTGAACCTCATTGGTACAATCGGTGGT 728
| ||||||||| |||||||||||||| || ||||||||||||||||||| || ||||||
Sbjct 481 AGGGATGGTGCCAGAGGAGCTGGTTTTGGTTTGTTGAACCTCATTGGTACGATTGGTGGT 540
Query 729 ATAGGAGGAGGTGTTGTAGCAACTGTTATGGCTGGTTCAGAGTTTTGGGGCATACCGGGA 788
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 541 ATAGGAGGAGGTGTTGTAGCGACGGTTATGGCTGGTTCAGAGTTTTGGGGCATACCGGGC 600
Query 789 TGGCGTTGTGCTTTTATAATGATGGCAGCGCTCAGCGCAGTGATCGGATTACTTGTCTTT 848
||||| |||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 601 TGGCGCTGTGCTTTCATAATGATGGCAACGCTCAGTGCAGTGATCGGATTACTCGTCTTT 660
Query 849 CTCTTCGTTGTTGACCCGAGAAAGAACATTGAACGAGAGGAACTAATGGCTCATAAGATG 908
|||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||
Sbjct 661 CTCTTCGTTGTTGACCCGAGAAAGAACATTGAACGAGATGAACTTATGGTTCATAAGATG 720
Query 909 AATTCGAACTCGGTTTGGAATGATTCATTAGCAGCTGCAAAATCTGTCGTCAAAGTAAGT 968
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 AATTCGACCTCGGTTTGGAATGATTCATTGGCAGCTGCAAAATCTGTCGTCAAAGTAAGT 780
Query 969 ACCTTTCAGATAATCGTCGCGCAAGGAATCATTGGTTCGTTTCCGTGGACCGCGATGGTT 1028
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 781 ACCTTTCAGATAATCGTCGCACAAGGAATCATTGGTTCGTTTCCATGGACCGCAATGGTT 840
Query 1029 TTCTTTACAATGTGGTTTGAGCTTATTGGCTTCGATCATAACCAGACTGCAGCTTTGCTT 1088
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 841 TTCTTTACGATGTGGTTTGAGCTTATTGGTTTCGATCATAACCAGACTGCAGCTTTGCTT 900
Query 1089 GGGGTATTTGCTACAGGAGGAGCGATAGGAACATTAATGGGAGGGATAATAGCGGATAAA 1148
|| ||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 901 GGTGTATTTGCTACGGGAGGTGCGATAGGAACATTAATGGGAGGGATAATCGCAGATAAA 960
Query 1149 ATGTCGCGGATATATCCGAATTCGGGTAGAGTGATGTGTGCGCAGTTCAGTGCATTCATG 1208
||||| ||||||||||| ||||| || ||||||||||||||||| |||||||||||||||
Sbjct 961 ATGTCACGGATATATCCAAATTCCGGAAGAGTGATGTGTGCGCAATTCAGTGCATTCATG 1020
Query 1209 GGAATCCCATTCTCTATTATTCTTCTGAAAGTAATCCCACAAAGCACAAGCAGCTACTCA 1268
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GGAATCCCATTCTCAATCATTCTTCTGAAAGTAATCCCACAAAGCACAAGCAGCTACTCA 1080
Query 1269 ATCTTCTCGATAACTCTCTTCCTGATGGGTCTTACCATAACTTGGTGCGGATCAGCGGTC 1328
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1081 ATCTTCTCAATAACTCTCTTCTTGATGGGTCTTACCATAACTTGGTGCGGATCAGCGGTT 1140
Query 1329 AATGCACCAATGTTTGCAGAAGTCGTTCCTCCAAGGCACCGTACAATGATCTACGCGTTT 1388
|||||||| |||||||| |||||||||||||| || |||||||| |||||||||||||||
Sbjct 1141 AATGCACCGATGTTTGCCGAAGTCGTTCCTCCTAGACACCGTACGATGATCTACGCGTTT 1200
Query 1389 GACCGTGCTTTCGAAGGGTCATTCTCATCTTTTGCTGCGCCTTTGGTTGGAATTTTGTCA 1448
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1201 GACCGTGCTTTTGAAGGGTCATTCTCGTCTTTTGCTGCGCCTTTGGTTGGAATTTTGTCT 1260
Query 1449 GAGAAACTGTTTGGGTATGACTCAAGAGGTATTGATCCTTTGAAAGGTTCCTCTGTTCGT 1508
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1261 GAGAAAATGTTTGGGTATGACTCGAGAGGTATTGATCCTTTGAAAGGTTCCTCTGTCCGT 1320
Query 1509 GAGGCTGATGCCCTTTCAAAGGGGCTTCTGTCAATGATGGCTGTTCCGTTTGGGCTCTGT 1568
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1321 GAGGCTGATGCCCTTTCAAAGGGGCTTCTGTCGATGATGGCTGTTCCGTTTGGGCTCTGT 1380
Query 1569 TGTCTCTGTTACACTCCGTTGCATTTTGTTTTCCAGAAAGATCGAGAAAACGCGAAAATC 1628
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TGTCTCTGTTACACTCCTTTGCATTTTGTTTTCCAGAAAGATCGAGAAAACGCGAAAATC 1440
Query 1629 GCGAGCTCTAAAGAAACTGAAATGATCTGA 1658
|||||||||||||||||||||||||| |||
Sbjct 1441 GCGAGCTCTAAAGAAACTGAAATGATTTGA 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64715326255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5