BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36820.1
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353160 jgi|Araly1|353160|fgenesh1_pg.C_scaffold_7000333 1406 0.0
Ahg888382 jgi|Araly1|888382|Al_scaffold_0007_368 274 1e-72
> Ahg353160 jgi|Araly1|353160|fgenesh1_pg.C_scaffold_7000333
Length=963
Score = 1406 bits (761), Expect = 0.0
Identities = 900/967 (93%), Gaps = 9/967 (1%)
Strand=Plus/Plus
Query 138 GGCGTCGCAAAGTCTCATGAACTGTCGTACTTCGTCTTCTTCTTCGTTAGCCATGCGAAC 197
|||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct 3 GGCGTCGCAAAGTCTCATGAACTGTCGTACTTCG---TCTTCTTCGCTAGCCGTGCGAAC 59
Query 198 TAGGGTTCCTAAAGATATAGGAGAAGCCACGATTGATCCAGAGCCTGGAGATTTGACGAT 257
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 60 TAGGGTTCCTAAAGATATAGGAGAAACCACGATTGATCCAGAGCCTGGGGATTTGACGAT 119
Query 258 TTCTCAGAGGTTTTTGAATAAATTCTCCATGAATGGGATTGATACGACTTCGAAGATGTC 317
|||||| ||||||||| ||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 120 TTCTCAAAGGTTTTTGCATAAATTTTCCATGAATGGGATTGATACGACTTCGATGATGTC 179
Query 318 TATTGGG-GAGAGTCTGATGGAGAAGCTTAAAGAAATGGATATGAACAAGGATCGGATTC 376
| |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 180 -AATGGGAGAGAGTTTGATGGGGAAGCTTAAAGAAATGGATGTGAACAAGGATCGGATTC 238
Query 377 GATTAGACGGACTTTCTCATCCGAAGGAGGAGACGTTAGGGCTTACTGTGCAAGACGTGA 436
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 239 GATTAGACGGACTTTCTCATCCGAAGGAGGAGACGTTGGGGCTTACTGTGCAAGACGTGA 298
Query 437 AGAAGTTGCTAAGAGCAG-CAGAGATCGAAGTTATTAAAACGAAGCTGATGGAGACAGGA 495
|||||||||||||||| | |||||||||||||| ||||||| || ||| ||||||| |||
Sbjct 299 AGAAGTTGCTAAGAGC-GTCAGAGATCGAAGTTGTTAAAACAAAACTGTTGGAGACGGGA 357
Query 496 AAAATCTGGATTCGTTACTCAGA-TTTCTTAGGTGTTTGTAGTGATTCTTCTTTGGATCC 554
|||||||||||||||||||| || ||| || ||||||||||||||||||||||||||||
Sbjct 358 AAAATCTGGATTCGTTACTCCGATTTTGTT-CGTGTTTGTAGTGATTCTTCTTTGGATCC 416
Query 555 TTCTCAAGGAGCTTTGATCGCTAAGATGCTTGATGATTCAGGAAACGTTATCGTTATGGG 614
||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 417 TTCGCAAGGACCTTTGATCGCAAAGATGCTTGATGATTCAGGAAACGTTATCGTTTTGGG 476
Query 615 AAACTCTGTTTGTTTAAGACCTCATCAGTTAACCAAATCCATAGAGGGGCTTCTTCCTTT 674
|||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||
Sbjct 477 AAACTCTGTTTGTTTAAGACCTGATCAGGTAACCAAATCCATTGAGGGGCTGCTTCCTTT 536
Query 675 ATCACAAATCCATAACCCGAATGACCCAAGAAGAAAGGAGCTAAATGAGCTTGAAGCTAT 734
| |||| || |||||||| |||||||| ||||||||||||||||| || |||||||||||
Sbjct 537 ACCACAGATTCATAACCCAAATGACCCGAGAAGAAAGGAGCTAAAAGATCTTGAAGCTAT 596
Query 735 AAAGACGGTCATTGACCAAAAAGCACATTCTTTGGTGAGAAGAGAGCTTTGGGCTGGTTT 794
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AAAGACGGTCATCGATCAGAAAGCACATTCTTTGGTGAGAAGAGAGCTTTGGGCTGGTTT 656
Query 795 GGGTTACTTGATCATCCAAACCGCAGGGTTTATGAGGCTAACGTTTTGGGACCTGACATG 854
|||||||||||||||||| ||||||| ||| |||||||||||||||||||| || |||||
Sbjct 657 GGGTTACTTGATCATCCAGACCGCAGCGTTCATGAGGCTAACGTTTTGGGAACTCACATG 716
Query 855 GGATGTTATGGAACCGATCTGTTTCTATGTCTCATCGGTATATTTCATGGCGGGTTACAC 914
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 717 GGATGTTATGGAACCGATCTGTTTCTATGTCACATCGGTATATTTCATGGCGGGTTATGC 776
Query 915 ATTTTTCCTCAAGACATCGAGAGAGCCTTCCTTTCAAGGTTTTTACCAAAGCAGGTTTGA 974
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 777 TTTTTTCCTCAAGACATCGAGAGAGCCTTCCTTTGAAGGGTTTTACCAAAGCAGGTTTGA 836
Query 975 GGCTAAACAAAGGAAACTGATGCAATCTGAGGATTTTGATGTTGGGAGGTATGATGAGCT 1034
||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 837 GGCTAAACAGAGGAAACTGATGGAATCTGAGGATTTTGATGTTGGGAGGTACGATGAGCT 896
Query 1035 GAAAAAGCTGTTTAATCCCAAGCCTTCAGGTGCTGTTCCCAAGATTCTTGGATCTCTACA 1094
||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 897 GAAGAAGCTGTTTAATCCCAAGCCTTCAGGTGCTGTTTCCAAGATTCTTGGAACTCTATG 956
Query 1095 GAATTGA 1101
|||||||
Sbjct 957 GAATTGA 963
> Ahg888382 jgi|Araly1|888382|Al_scaffold_0007_368
Length=396
Score = 274 bits (148), Expect = 1e-72
Identities = 219/250 (88%), Gaps = 18/250 (7%)
Strand=Plus/Plus
Query 138 GGCGTCGCAAAGTCTCATGAACTGTCGTACTTCGTCTTCTTCTTCGTTAGCCATGCGAAC 197
||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||
Sbjct 3 GGCGTCGCAAAGTCTGATGAACTGTCGTACTTCG---TCTTCTTCGTTAGCCCTGCGAAC 59
Query 198 TAGGGTTCCTAAAGATATAGGAGAAGCCACGATTGATCCAGAGCCTGGAGATTTGACGAT 257
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 60 TAGGGTTCCTAAAGATATAGGAGAAGCCACGATTGATCCAGAGCCTGGGGATTTGACGAC 119
Query 258 TTCTCAGAGGTTTTTGAATAAATTCTCCATGAATGGGATTGATACGACTTCGAAGATGTC 317
||||| |||||||||| ||||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 120 TTCTCGGAGGTTTTTGCATAAAATCTCCATGAATGGGATTGATATGACTTCGAAGA-GT- 177
Query 318 TATTGGGGAGAGTCTGATGGAGAAGCTTAAAGAAATGGATATGAACAAGGATCGGATTCG 377
| | | | | | | | | | |||| |||||||||| ||||||||||| |||||||
Sbjct 178 T-T-G---AT-G-C--A-G-A-A-GCTTCGAGAAATGGATGTGAACAAGGATAGGATTCG 224
Query 378 ATTAGACGGA 387
||||||||||
Sbjct 225 ATTAGACGGA 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41020258692
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5