BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36830.1
Length=1045
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944190 jgi|Araly1|944190|scaffold_700419.1 1384 0.0
> Ahg944190 jgi|Araly1|944190|scaffold_700419.1
Length=934
Score = 1384 bits (749), Expect = 0.0
Identities = 823/860 (96%), Gaps = 0/860 (0%)
Strand=Plus/Plus
Query 61 GATCAAATTCAAACTATGTCAACGGCTCTGATTAACTCTATTACCTACTTCCTCTCCGAA 120
||||||| ||||||||||||||||||||||| |||||| | ||||||| ||||||||||
Sbjct 6 GATCAAAACCAAACTATGTCAACGGCTCTGATCAACTCTCTCACCTACTACCTCTCCGAA 65
Query 121 CATCCATACATCGTCGGATTCCGTTGGAGTAACAGCCAATCATGGGGCTCCACGTGGTCT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 66 CATCCATACATCGTCGGATTCCGTTGGAGCAACAGCCAATCATGGGGCTCCACGTGGTCT 125
Query 181 TTCCTCTTCACATCAATCTCCCTCTATATCGCCGTCTCATCCTCCCTCCACATCCTCCTC 240
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 126 TTCCTCTTCACCTCAATCTCCCTCTACATCGCCGTCTCATCCTCCCTCCACATCCTCCTC 185
Query 241 TCCGCCGTACGCCGAAGTAACCGTTCCGTTCCTTTAGGTCACATCCCCGAAATCCACAGC 300
|||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 186 TCCGCCGTACTCCGACGTAACCGTTCCGTTCCTTTAGGCCACATCCCCGAAATCCACAGC 245
Query 301 CTTCTCATGTCGATCCTCTCCGCCACCATTTTCGCCGGAATCCTCCTCTCCGCTGCCGCA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 246 CTTCTCATGTCGATCCTCTCCGCCACCATTTTCGCCGGAATCCTCCTCTCCGCCGCCGCA 305
Query 361 GAGATCCGTGACACACGGTGGTTATGGCGGCGGAGCAAAACCGCCACTCCTCTCCAATGG 420
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 306 GAGATCCGTGACACACGGTGGTTGTGGCGGCGGAGCAAAACCTCCACTCCTCTCCAATGG 365
Query 421 CTTCTCTGTTTCCCTCTCGGGACTCGTCCCTCTGGTCGTGTCTTCTTTTGGTCATACGTG 480
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 366 CTCCTCTGTTTCCCTCTCGGGACTCGTCCCTCTGGTCGTGTCTTCTTTTGGTCATACGCG 425
Query 481 TTTTACCTCACGCGCTTTCTCCACATGTTCCGTACGATTTTCGCCGTTTTACGTAGCCGG 540
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 426 TTTTACATCACGCGCTTTCTCCACATGTTCCGTACGATCTTCGCCGTTTTACGTCGTCGG 485
Query 541 AGGCTCGCCGTGTCTCAGCTCTTTTGTAACTCCGTCATGGCCTTCACGTCTTTCCTCTGG 600
|| ||| |||||||||||||||| ||||||||||||||||| |||||||| ||||| |||
Sbjct 486 AGACTCTCCGTGTCTCAGCTCTTCTGTAACTCCGTCATGGCATTCACGTCGTTCCTTTGG 545
Query 601 CTAGAATTCTCGCAGTCGTACCAGATTCTAGCGATTCTATCGACGACTCTGGTTTACTCG 660
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 546 CTCGAATTCTCGCAGTCGTACCAGATTCTAGCGATTCTATCGACGACGCTGGTTTACTCT 605
Query 661 GTGGTTTACGGTTATAGATTCTGGACCGGGTTTGGTTTACCCGGTTCGGCTTTCCCTTCG 720
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 606 GTGGTTTACGGTTACAGATTTTGGACCGGGTTTGGTTTACCTGGTTCGGCTTTCCCTTCG 665
Query 721 TTTGTGGTGAATTGTCAGTTGGTTCTCGTGGGCTGTAATCTCGTGTCTCACGCTGGGGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 TTTGTGGTGAATTGTCAGTTGGTTCTCGTGGGCTGTAATCTCGTGTCTCACGCTGGGGTT 725
Query 781 CTTACGATGCACCTCTTTAAAGGTGGATGCAATGGGATTGGCGCGTGGGGTTTAAACTCG 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 726 CTTACGATGCACCTCTTTAAAGGTGGATGCAATGGGATCGGCGCGTGGGGTTTAAACTCG 785
Query 841 GTTCTCAACGGTGCGATTTTGTTGCTTTTTCTTAACTTTTATGTGAGAATGCATTCGCCA 900
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 786 GTTCTCAACGGTGCGATTTTGTTGCTTTTCCTTAACTTTTATGTGAGAATGCATTCTCCA 845
Query 901 ATGCGACGCCATATTAATAA 920
|||||||||| |||||||||
Sbjct 846 ATGCGACGCCGTATTAATAA 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38885375340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5