BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36840.1
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328084 jgi|Araly1|328084|fgenesh1_pm.C_scaffold_7000311 983 0.0
Ahg924387 jgi|Araly1|924387|scaffold_105668.1 261 1e-68
Ahg947025 jgi|Araly1|947025|scaffold_703254.1 239 5e-62
> Ahg328084 jgi|Araly1|328084|fgenesh1_pm.C_scaffold_7000311
Length=720
Score = 983 bits (532), Expect = 0.0
Identities = 659/721 (91%), Gaps = 5/721 (1%)
Strand=Plus/Plus
Query 814 ATGAAGATGGCTCGTGCTTCCGCATCGGCAAGCCTCATAGACGGGAAGATCTACGTTTTT 873
||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||
Sbjct 1 ATGAAGATGGCTCGTGCTTCCGCATCGGCAAGCTTTGTAGACGGGAAGATCTATGTTTTT 60
Query 874 GGAGGGTGCCCAGAGGACGCTGATTCCTCAAACTGGGCGGAGGTATTCGATCCAGTTTAC 933
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GGAGGGTGCCGAGAGGACGCTGATTCCTCAAACTGGGCGGAGGTATTCGATCCAATTTAC 120
Query 934 CAAACTTGGGGTATATTTAATACGCCGAAGATGGCCCATAGTATCAACCAAAGTGTGGTG 993
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 121 CAAACTTGGGGTAAATTTAATACGCCGAAGATGGCCCATAATATCAACCAAAGTGTAGTA 180
Query 994 ATAGAGGAGAAGAAGGTTTACGCCGTGGATGAGGAGGACCAAAGCTTTAGCTTCTTGCCA 1053
|||||||||||||||||||| ||||||||||||| || |||||||| | ||||||||||
Sbjct 181 ATAGAGGAGAAGAAGGTTTATTCCGTGGATGAGGATGATCAAAGCTTCAACTTCTTGCCA 240
Query 1054 AGTGAAGGTAGAATCTGGAAAAGCGGaaaaaaaGATTCTAAGGTAGGAAGTAGACACGAT 1113
|||||||||||| | |||||||| |||||||||||||| ||| ||||||||||| |||||
Sbjct 241 AGTGAAGGTAGATTATGGAAAAGAGGAAAAAAAGATTCAAAGCTAGGAAGTAGAAACGAT 300
Query 1114 TGGTGTGTCATTGGGAAATTACTATACTGTCGTGCT---ACTCGCGGTAGAATACTATGG 1170
|||||||||| ||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 301 TGGTGTGTCACTGGGAAATTGTTATACTGTCGTGGTGGTACTCGCGGTAGAATACTATGG 360
Query 1171 TGCCAACCAGATGAGTTGGACTGGAAAGAGGTAAAAGGTTTGGAACAGCTACAATTGTAT 1230
|| ||||||||||||||||| ||||| ||||| |||||||||||| ||||||| ||||||
Sbjct 361 TGTCAACCAGATGAGTTGGATTGGAAGGAGGTCAAAGGTTTGGAAGAGCTACAGTTGTAT 420
Query 1231 CTCTCTGGTACAAGATACATCTTCAGACGTACCTCTGATAAACGACCGTCAAAGACC-AA 1289
|||||| |||| ||||||||||||||||||||||| |||||||| || ||||||||| ||
Sbjct 421 CTCTCTTGTACGAGATACATCTTCAGACGTACCTCGGATAAACGGCCATCAAAGACCCAA 480
Query 1290 CGTCAAATATGATATTAGAAAAATCTCTAGTAACTCTGCTGGGAACATTGTCATCTTCGG 1349
||||||||||||||||| ||| ||| || |||||||||||||||||||||||||||| |
Sbjct 481 -GTCAAATATGATATTAGCAAACTCTGTACTAACTCTGCTGGGAACATTGTCATCTTCTG 539
Query 1350 GAACGCACATATTGGAGACCCTGAGTGTGTGGAGCTTTGGTCTGCCGAGATTTCCATGGA 1409
|| ||||||||||||||| ||||| || |||| |||||||||||||||||||| |||||
Sbjct 540 GAGCGCACATATTGGAGATTCTGAGAGTATGGATCTTTGGTCTGCCGAGATTTCAATGGA 599
Query 1410 GAGGCGCGAGGGAGGTGAGATTTGGGGGAAGATTGAGTGGTCCAATGTTGTCTTCAAACT 1469
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 GAGGCGTGAGGGAGGTGAGATTTGGGGGAAGATTGAGTGGTCCAATGCTGTCTTCAAACT 659
Query 1470 TGATCCTCTCTCAAACTCATATAGCGTTGATGTCTTATTTTCTGCTTCTGTCCATTTGTG 1529
||||||||||||||||||||||||| || | || ||||||||||||||||||| | ||||
Sbjct 660 TGATCCTCTCTCAAACTCATATAGCCTTAAGGTTTTATTTTCTGCTTCTGTCCGTCTGTG 719
Query 1530 A 1530
|
Sbjct 720 A 720
> Ahg924387 jgi|Araly1|924387|scaffold_105668.1
Length=1105
Score = 261 bits (141), Expect = 1e-68
Identities = 610/827 (74%), Gaps = 69/827 (8%)
Strand=Plus/Plus
Query 435 GATTCTGTGGCTGTGAGTTGCATGGCTCGCG-TCTCGAGATTGGACCAAACAGCCTTATC 493
||||| |||| ||||| ||| | |||| | | ||||||||||||| |||||| |
Sbjct 141 GATTCGGTGGTTGTGAACTGCCTTGCTC-AGTTGTCGAGATTGGACCTCGTGGCCTTAGC 199
Query 494 TCTCG-CTCCAAGAAAT-ACCGCTCTCTCGTAACATCCCCTGAGCTC-TGCAGCACGCGA 550
| ||| ||||||| ||| |||| ||||| || |||||||||||| | | | | ||
Sbjct 200 TATCGCCTCCAAG-AATCACCGGTCTCTGGTGGTTTCCCCTGAGCTCAGGGA-CTTGAGA 257
Query 551 TCGCTGATTG-GTTGCACT-GAGCCATCTTTCTTCGTCTGCTTGCGCATCTTACCTGATC 608
| || | | |||||| | ||||||||| ||| ||| |||||||||||||| || || |
Sbjct 258 TGGCAG-CAGCGTTGCA-TGGAGCCATCTCTCTACGTATGCTTGCGCATCTTTCCAGAAC 315
Query 609 CAACCCCTCGCTGGTTCGTCCT-TA---CGGGTAGTCGTCGACTGAGGCCGGTCCCAT-C 663
||| ||| ||||||||| |||| | | | | ||| | |||| ||| | ||||
Sbjct 316 CAAGCCCACGCTGGTTCATCCTCCACCCCATGCA-ACGTTGGCTGAAACCGAT-CCATAT 373
Query 664 GCACCCCTATCAGGCTCCGGAATCA---TCTTCTTTTGTGGTAG-TGAATTGGGGGATCT 719
| || |||||||||||| ||||| || |||||||| || | || ||| || | |
Sbjct 374 GGACTTGTATCAGGCTCCGAAATCAGCCTCCTCTTTTGTAGT-GATGGGTTGTGGCA--T 430
Query 720 ATGTTATGTAATCGGTGGAATCATAAACGGCAATCCCACTTCCGATGTCTTGTTCCTCAA 779
|| |||| | || |||||| || || ||||||| ||||||||||| |||| || || |
Sbjct 431 AT-TTAT-T-ATTGGTGGACTCGTAGACGGCAAACCCACTTCCGAAGTCTCCTTTTTCGA 487
Query 780 CTGTTTTTCTCAGACATGGCACCGCGTCCCGTCTATGAAGATGGCTCGTGCTTCCGCATC 839
||||| || | |||| | ||| | ||| | ||||||||||||||||||||||||||
Sbjct 488 TTGTTTCGAGCACAGATGGTATCGCATGCCGCCAATGAAGATGGCTCGTGCTTCCGCATC 547
Query 840 GGCAAGCCTCATAGACGG----GAAGATCTACGTTTTTGGAGGGTGCCCAGAGGA---CG 892
||||||||| || ||| | |||||| || || |||||||||||| || || ||
Sbjct 548 GGCAAGCCTGAT-GACAGATTCGAAGATATATGTGTTTGGAGGGTGCGGGGAAGATGTCG 606
Query 893 CTGATTCCTCAAACTGGGCGGAGGTATTCGATC-CAGTTTACCA-AACTTGGGGTATATT 950
| |||||||||||||||| ||||| |||||| || | ||| |||||||||| | ||
Sbjct 607 CCAATTCCTCAAACTGGGCAGAGGTGTTCGATGTCACT--ACCCTAACTTGGGGTTTCTT 664
Query 951 -TAA-T----ACGCCGAAGATGGCCCATAGTATC-AACCAAAGTGTGGT---GATAGAGG 1000
|| | ||||| |||||| ||| || |||| ||| |||||||||| |||| | |
Sbjct 665 GTATGTGTTTACGCCCAAGATGCCCCTTAATATCCAAC-AAAGTGTGGTAATGATAAAAG 723
Query 1001 AGAAGAAGGTTTACGCCGTGGATGAGGA-GGACCAAAGCTT-TAGCTT-CTTGCCAAGTG 1057
||||| ||||||||| ||||||||||| || | ||| ||| | ||| || ||||||
Sbjct 724 AGAAGGAGGTTTACGTAGTGGATGAGGATGGTCAAAA-CTTCT--CTTTCTCACCAAGTA 780
Query 1058 AAGGTA-GAATCTGGAAAAGCGGaaaaaaaGATTCTA-AGGTAGGAAG--T--A--GACA 1109
|| ||| | | ||| || | || |||| |||||||| | ||||| | | || |
Sbjct 781 AATGTATGTTTGTGGCAAGG-GGCAAAACAGATTCTATACC-AGGAAACATTTACAGAAA 838
Query 1110 CGATTGGTGTGTCATTGGGAAATTACT-ATACTGTCGTGCTACTCGCGGTAGAATACTAT 1168
|||||||||||||||||||| ||| || || ||||||| ||||||||| |||||||| |
Sbjct 839 CGATTGGTGTGTCATTGGGACATT-CTTATTTTGTCGTGGTACTCGCGGAAGAATACTGT 897
Query 1169 GGTGCCAACCAGATGAGTTGGACTGGAAAGAGGTAAAAGGTTTGGAA 1215
|||| || |||||||| | ||||| || || || |||||||||
Sbjct 898 GGTGTTTGCCCTATGAGTTGCATTGGAAGGAAGTCAAGGGTTTGGAA 944
> Ahg947025 jgi|Araly1|947025|scaffold_703254.1
Length=1145
Score = 239 bits (129), Expect = 5e-62
Identities = 583/793 (74%), Gaps = 67/793 (8%)
Strand=Plus/Plus
Query 468 TCGAGATTGGACCAAACAGCCTTATCTCTCG-CTCCAAGAAAT-ACCGCTCTCTCGTAAC 525
|||||||||||| | |||||| || | | ||||||| ||| |||| ||||| ||
Sbjct 94 TCGAGATTGGACTTCGCGGCCTTAGCTATTGCCTCCAAG-AATCACCGGTCTCTGGTGGT 152
Query 526 ATCCCCTGAGCTC-TGCAGCACGCGATCGCTGATTG-GTTGCACT-GAGCCATCTTTCTT 582
|||||||||||| | | | | ||| || | | |||||| | ||||||||| |||
Sbjct 153 TTCCCCTGAGCTCAGGGA-CTTGAGATGGCAG-CAGCGTTGCA-TGGAGCCATCTCTCTA 209
Query 583 CGTCTGCTTGCGCATCTTACCTGATCCAACCCCTCGCTGGTTCGTCCT-TA---CGGGTA 638
||| |||||||||||||| || || |||| ||| ||||||||| |||| | | | |
Sbjct 210 CGTATGCTTGCGCATCTTTCCAGAACCAAGCCCACGCTGGTTCATCCTCCACCCCATGCA 269
Query 639 GTCGTCGACTGAGGCCGGTCCCAT-CGCACCCCTATCAGGCTCCGGAATCA---TCTTCT 694
||| | |||| ||| | |||| | || |||||||||||| ||||| || |||
Sbjct 270 -ACGTTGGCTGAAACCGAT-CCATATGGACTTGTATCAGGCTCCGAAATCAGCCTCCTCT 327
Query 695 TTTGTGGTAG-TGAATTGGGGGATCTATGTTATGTAATCGGTGGAATCATAAACGGCAAT 753
||||| || | || ||| || | |||| ||| | || |||||| || || |||||||
Sbjct 328 TTTGTAGT-GATGGGTTGTGGCA--TATG-TAT-T-ATTGGTGGACTCGTAGACGGCAAA 381
Query 754 CCCACTTCCGATGTCTTGTTCCTCAACTGTTTTTCTCAGACATGGCACCGCGTCCCGTCT 813
||||||||||| |||| ||| || | ||||| || | |||| | ||| | ||| |
Sbjct 382 CCCACTTCCGAAGTCTCGTTTTTCGATTGTTTCAAGCACAAATGGTATCGCATGCCGCCA 441
Query 814 ATGAAGATGGCTCGTGCTTCCGCATCGGCAAGCCTCATAGACGG----GAAGATCTACGT 869
||||||||||||||||||||||||||||||||||| || ||| | |||||| || ||
Sbjct 442 ATGAAGATGGCTCGTGCTTCCGCATCGGCAAGCCTGAT-GACAGATTCGAAGATATATGT 500
Query 870 TTTTGGAGGGTGCCCAGAGGA---CGCTGATTCCTCAAACTGGGCGGAGGTATTCGATC- 925
|||||||||||| || || ||| |||||||||||||||| ||||| ||||||
Sbjct 501 GTTTGGAGGGTGCGGGGATGATGTCGCCAATTCCTCAAACTGGGCAGAGGTGTTCGATGT 560
Query 926 CAGTTTACCA-AACTTGGGGTATATT-TAA-T----ACGCCGAAGATGGCCCATAGTATC 978
| | | ||| |||||||| | | || || | ||||| |||||| ||| || ||||
Sbjct 561 C-GCT-ACCCTAACTTGGGATTTCTTGTATGTGTTTACGCCCAAGATGCCCCTTAATATC 618
Query 979 -AACCAAAGTGTGGT---GATAGAGGAGAAGAAGGTTTACGCCGTGGATGAGGA-GGACC 1033
||| |||||||||| |||| | |||||| ||||||||| ||||||||||| || |
Sbjct 619 CAAC-AAAGTGTGGTAATGATAAAAGAGAAGGAGGTTTACGTAGTGGATGAGGATGGTCA 677
Query 1034 AAAGCTT-TAGCTT-CTTGCCAAGTGAAGGTA-GAATCTGGAAAAGCGGaaaaaaaGATT 1090
||| ||| | ||| || |||||| || ||| | | ||| || | || |||| |||||
Sbjct 678 AAA-CTTCT--CTTTCTCACCAAGTAAATGTATGTTTGTGGCAAGG-GGCAAAACAGATT 733
Query 1091 CTA-AGGTAGGAAG--T--A--GACACGATTGGTGTGTCATTGGGAAATTACT-ATACTG 1142
||| | ||||| | | || ||||||||||||||||||||| ||| || || ||
Sbjct 734 CTATACC-AGGAAACATTTACAGAAACGATTGGTGTGTCATTGGGACATT-CTTATTTTG 791
Query 1143 TCGTGCTACTCGCGGTAGAATACTATGGTGCCAACCAGATGAGTTGGACTGGAAAGAGGT 1202
||||| ||| ||||| |||||| | ||||| || |||||||| | ||||| || ||
Sbjct 792 TCGTGGTACCCGCGGAAGAATATTGTGGTGTTTGCCCTATGAGTTGCATTGGAAGGAAGT 851
Query 1203 AAAAGGTTTGGAA 1215
|| |||||||||
Sbjct 852 CAAGGGTTTGGAA 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59687413915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5