BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36850.1
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490949 jgi|Araly1|490949|fgenesh2_kg.7__382__AT4G36850.1 1051 0.0
> Ahg490949 jgi|Araly1|490949|fgenesh2_kg.7__382__AT4G36850.1
Length=1202
Score = 1051 bits (569), Expect = 0.0
Identities = 625/652 (96%), Gaps = 3/652 (0%)
Strand=Plus/Plus
Query 70 atGGTGTCTTTAGGTTACTGCTTGAAGGAGAAGAAGACATGCGTGAGATGGGTAGAGATA 129
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGTGTCTTTAGGTTACTGCTTGAAGGAGAAGAAGACATGCGTGAGATGGGTAGAGAGA 60
Query 130 TACTTCGATGACTGTCTCTGTAACTTAAACGACGACGTTTCATTCGCACTTGGAATCGCT 189
|||||||| |||||||| |||||| ||||||| |||||||| || ||||||||||| |||
Sbjct 61 TACTTCGACGACTGTCTATGTAACCTAAACGATGACGTTTCGTTTGCACTTGGAATTGCT 120
Query 190 AGCCTCCTCTGTTGGGGAGTCGCAGAGATTCCTCAGGTCATCACTAACTTCCGTACAAAG 249
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 AGCCTCCTCTGTTGGGGCGTCGCAGAGATTCCTCAGATCATCACTAACTTCCGTACAAAG 180
Query 250 TCAAGTAACGGTGTCTCTCTCTCCTTCCTCCTCGCTTGGGTCGCCGGTGATATCTTCAAT 309
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAAGTCACGGTGTCTCTCTCTCCTTCCTCCTCGCTTGGGTCGCCGGTGATATCTTCAAT 240
Query 310 CTCGTCGGTTGTCTTCTTGAACCAGCTACTTTGCCGACTCAGTTCTACACAGCCTTGCTT 369
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTGTCGGTTGTCTTCTTGAACCAGCTACTTTGCCGACTCAGTTCTACACAGCCTTGCTC 300
Query 370 TACACAGTGAGCACTGTAGTATTGGTGATCCAGACTATTTACTACGATTACATCTACAAA 429
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TACACAGTGAGCACTGTGGTATTGGTGATCCAGACTATTTACTACGATTACATCTACAAA 360
Query 430 CTTTGTAGACATAGACGTACCAAGATTTGTCAAAAGGATGAGGAAGATGAAGAGAAGAGA 489
|||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 CTTTGTAGGCATGGACGTACCAAGATTTGTCAAAAGGATGATGAAGATGAAGAGAAGAGA 420
Query 490 CCATTGAAACCACCAAAGACGATGGGATCTGCTATTTCCATCCCAGGAGGATCTTACAAA 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCATTGAAACCACCAAAGACGATGGGATCTGCTATTTCCATCCCAGGAGGATCTTACAAA 480
Query 550 GATTCTTCTCGGAGAGAGTTCTATTACACGTCGGCGAGATCGTTGGCCGGAAGTGGCACA 609
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATTCTCCTCGGAGAGAGTTCTATTACACGTCGGCGAGATCGTTGGCCGGAAGTGGCACA 540
Query 610 CCTCCCTTAAGAACATCGTATTTTCGAGTGGCTAAGAGTGGCCCTTCGGCTCTGGCAATC 669
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 CCTCCCTTAAGAACATCGTATTTTCGAGTGGCTAAGAGTGGCCCTTCGGCTCTAGCAATA 600
Query 670 GACAATGATGGTTCGTCATCGGACGAAGATGAGACAATGTCGACGTGTCCTG 721
|| |||| | |||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 601 GATAATG--G-TTCGTCATCGGAAGAAGAAGAGGCAATGTCGACGTGTCCTG 649
Score = 826 bits (447), Expect = 0.0
Identities = 521/556 (94%), Gaps = 7/556 (1%)
Strand=Plus/Plus
Query 769 GCAGGTTTTGGAACGTTTTTGGCTGCATCGGCTAGTCTTCCGCTTCAGGCAAAGAGCTTA 828
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 649 GCAGGTTTTGGAACGTTTTTGGCTGCATCAGCTAGTCTTCCGCTTCAGGCAAAGAGCTTA 708
Query 829 GCGGAAAAATA-TGCACATGCTTCAAGCAGACGGCTTCTAAACGAAAGAATAGTAGAGCA 887
|||||||| || || |||||||||||||||||||||||||| || |||| |||||||||
Sbjct 709 GCGGAAAAGTACTG-GCATGCTTCAAGCAGACGGCTTCTAAATGAGAGAAGAGTAGAGCA 767
Query 888 TAGCGCGTTGGGACAATGGTTGGGATGGCTAATGGCCGCCATTTACATGGGCGGTCGCAT 947
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 CAGCGCATTGGGACAATGGTTGGGATGGCTAATGGCCGCCATTTACATGGGCGGTCGCAT 827
Query 948 TCCTCAGATTTGGCTCAACATCAAAAGAGGAAGCGTCGAGGGTTTGAATCCACTGATGTT 1007
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 828 CCCTCAGATCTGGCTCAACATCAAAAGAGGAAGCGTTGAGGGTTTGAATCCACTGATGTT 887
Query 1008 CATCTTCGCGCTAGTAGCCAATGCAACATATGTTGGTAGTATTCTTGTCCGAACAACTGA 1067
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CATTTTCGCTCTAGTAGCCAATGCAACATATGTTGGTAGTATTCTTGTCCGAACAACTGA 947
Query 1068 ATGGGACAACATCAAACCAAACCTTCCTTGGTTGCTTGATGCTATTGTCTGCGTCGTACT 1127
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 ATGGGAGAACATCAAACCAAACCTTCCTTGGTTGCTTGATGCTATTGTCTGCGTCGTACT 1007
Query 1128 AGATCTATTTATAATACTGCAGTATATCTACTACAAGTATTGCAGGATAAAGAGCTTGGA 1187
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1008 CGATCTATTTATAATACTGCAGTATATCTACTACAAGTATTGCAGGATGCAGAGCTTAGA 1067
Query 1188 AAGCAGAGAAGAAGACGCCTATGGAGACTATGTGGAAGCAAGCAAAACTTTTGTTTCGTG 1247
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 AAGCAAAGAAGAAGACGTCTATGGAGACTATGTGGAAGCAAGCAAAACTTTTGTTTCGTG 1127
Query 1248 AATCACTATTTA-TGTTACAAGGATAATTTGATTTTCTTTTGATCTTAAG-T-AT-TATT 1303
|||||||||||| | |||||| ||| |||| ||||||||||| |||| | || ||||
Sbjct 1128 AATCACTATTTACT-TTACAACGATCATTTTATTTTCTTTTGGCCTTATCCTTATGTATT 1186
Query 1304 GATTTCATAGTGTATG 1319
||||||| ||||||||
Sbjct 1187 GATTTCAGAGTGTATG 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51351569199
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5