BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36870.1
Length=2530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328081 jgi|Araly1|328081|fgenesh1_pm.C_scaffold_7000308 3144 0.0
Ahg932374 jgi|Araly1|932374|scaffold_400362.1 725 0.0
> Ahg328081 jgi|Araly1|328081|fgenesh1_pm.C_scaffold_7000308
Length=2181
Score = 3144 bits (1702), Expect = 0.0
Identities = 2076/2242 (93%), Gaps = 83/2242 (4%)
Strand=Plus/Plus
Query 104 ATGGGAATAACTAAAACTTCTCCTAATACTACAATTCTCTTGAAGACTTTTCACAATAAT 163
||||||||| ||||||||||||||| |||||||| ||||||||||||| |||||||||||
Sbjct 1 ATGGGAATAGCTAAAACTTCTCCTACTACTACAACTCTCTTGAAGACTCTTCACAATAAT 60
Query 164 TCTATGTCCCAAGATTatcatcatcatcatcatcatAATCAACACCAAGGAGGTATCTTC 223
|||| | | || | || | || | || ||||||||||| ||||||
Sbjct 61 TCTA--T-----G----TC--C--CA--A-GAT--T-AT---CACCAAGGAGGAATCTTC 96
Query 224 AACTTCTCTAATGGATTCGACCGATCAGATTCTCCCAATTTAACAACTCAGCAGAAGCAA 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 AACTTCTCTAATGGATTCGACCGATCAGATTCTCCCAATTTAACAACTCAGCAGAAGCAA 156
Query 284 GAGCATCAAAGGGTAGAGATGGACGAGGAATCTTCAGTC-GCCGGAGGTAGGATTCCGGT 342
|||||||||||||||||||||||||||||| | |||| | ||||||| ||||||||||||
Sbjct 157 GAGCATCAAAGGGTAGAGATGGACGAGGAACCCTCAG-CGGCCGGAGATAGGATTCCGGT 215
Query 343 CTACGAATCAGCCGGTATGTTATCCGAAATGTTTAATTTCCCCGGAAGCAGCGGTGGAGG 402
||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 216 CTACGAATCTGCCGGAATGTTATCCGAGATGTTTAATTTCCCCGGAAGCAGTGGTGGAGG 275
Query 403 AAGAGATCTCGACC-TCGGCCAATCTTTCCGGTCAAATAGGCAGTTGCTTGAGGAGCAAC 461
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 AAGAGATCTCGACCAT-GGCCAATCTTTCCGGTCAAATAGGCAGTTGCTTGAGGAGCAAC 334
Query 462 ATCAGAATATTCCGGCTATGAATGCTACGGATTCAGCCACCGCCACCGCAGCCGCCATGC 521
|||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 335 ATCAGAATATTCCGGCCATGAATGCTACGGATTCGGCCACTGCCACCGCGGCCGCCATGC 394
Query 522 AGTTATTCTTGATGAATCCACCGCCACCGCAACAACCACCGTCTCCGTCATCCACAACTT 581
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 395 AGTTATTCTTGATGAATCCACCGCCACCGCAACAACCACAGTCTCCGTCATCCACAACTA 454
Query 582 CCCCAAGGAGCCACCACAATTCTTCAACTCTTCACATGTTACTTCCAAGTCCATCCACCA 641
|| |||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 455 CCACAAGGAGCCATCACAATTCATCAACTCTTCACATGTTACTTCCAAATCCATCCACCA 514
Query 642 ACACAACTCACCATC-AGAACTACACTAATCATATGTCTATGCATCAGCTTCCACATCAG 700
||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct 515 ACACAACTCACCATCAAG-GCTACACGAATCATATGTCTATGCATCAGCTTCCACATCAG 573
Query 701 CATCACCAGCAGATATCGACGTGGCAG---TCTT-CT-C-CCGatcatcatcatcatcat 754
|||||||| ||| || |||||||||| |||| || | |||||||||||||||| ||
Sbjct 574 CATCACCAACAG--AT-GACGTGGCAGTACTCTTCCTCCTCCGATCATCATCATCA-CA- 628
Query 755 caCAACAGCCAAACGGAGATTGGGACCGTCCACGTGGAAAACAGCGGAGGACACGGAGGA 814
||||||||||||| || || |||||||||||||||| ||| | | | | |||||||
Sbjct 629 -ACAACAGCCAAACCGAAATCGGGACCGTCCACGTGG-AAA-A-C--A-G---CGGAGGA 678
Query 815 CAAGGCTTGTCCTTATCTCTCTCATCGTCTTTAGAGGCTGCAGCAAAAGCGGAAGAGTAT 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 CAAGGCTTGTCCTTATCTCTCTCATCGTCTTTAGAGGCTGCAGCAAAAGCGGAAGAGTAT 738
Query 875 AGAAACATTTACTACGGAGCCAATTCTTCTAACGCATCACCTCATCATCAATACAATCAA 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AGAAACATTTACTACGGAGCCAATTCTTCTAACGCATCACCTCATCATCAATACAATCAA 798
Query 935 TTCAAGACTCTTCTTGCTAATTCTTCTCAACATCACCATCAAGTATTAAACCAATTCCGA 994
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 799 TTCAAGACTCTTCTTGCTAATTCTTCTCAACATCAACATCAAGTACTAAACCAATTCCGA 858
Query 995 TCATCTCCGGCTGCTTCTTCCTCTTCCAT-GGCAGCGGTCAATATCTTAAGAAACTCGAG 1053
||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 859 TCATCTCCGGCGGCTTCTTCCTCTTCCATCGG-AGCGGTCAATATCTTAAGAAACTCGAG 917
Query 1054 GTACACAACGGCCGCGCAAGAGTTGTTGGAAGAGTTTTGTAGTGTTGGAAGAGGATTTTT 1113
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 GTACACAACGGCCGCACAAGAGTTGTTGGAAGAGTTTTGTAGTGTTGGAAGAGGATTTTT 977
Query 1114 GAAGAAGAACAAACTTGGGAACAGCTCAAACCCTAATACTTGCGGTGGTGATGG---TGG 1170
||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 978 AAAGAAGAACAAACATGGGAACAGCTCAAACCCTAATACTAGCGGTGGCGATGGCGGTGG 1037
Query 1171 TGGCAGCTCTCCTTCGTCGGCCGGAGCAA-ACAAGGAGCATCCTCCTTTATCGGCGTCTG 1229
||||||||||||| |||| ||||||||| | ||||| ||||||||||||||||||||||
Sbjct 1038 TGGCAGCTCTCCTCCGTCAGCCGGAGCAGTA-AAGGATCATCCTCCTTTATCGGCGTCTG 1096
Query 1230 ATCGGATTGAGCATCAAAGAAGGAAAGTGAAACTACTCACCATGCTTGAAGAGGTGGACC 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 ATCGGATTGAGCATCAAAGAAGGAAAGTGAAACTACTCACCATGCTTGAAGAGGTGGACC 1156
Query 1290 GACGGTACAACCATTACTGCGAGCAAATGCAGATGGTTGTGAACTCTTTCGACATAGTAA 1349
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1157 GACGGTACAACCATTACTGCGAGCAAATGCAGATGGTTGTGAATTCTTTCGACATAGTAA 1216
Query 1350 TGGGCCACGGTGCGGCATTACCGTACACCGCATTGGCTCAAAAAGCTATGTCAAGACATT 1409
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1217 TGGGCCACGGTGCGGCGTTACCGTACACCGCATTGGCTCAAAAAGCCATGTCAAGGCATT 1276
Query 1410 TTAGATGCCTTAAAGATGCAGTTGCGGCTCAGCTTAAGCAGAGTTGCGAACTTCTTGGGG 1469
|| ||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1277 TTCGATGCCTTAAAGACGCTGTTACGGCTCAGCTTAAGCAGAGTTGCGAACTTCTTGGGG 1336
Query 1470 ACAAAGATGCAGC-GGGAATCTCTTCTTCCGGGTTAACAAAAGGTGAAACTCCGCGTTTG 1528
||||||||||||| |||| | ||||||||||| ||||| ||||| ||||||||||| |||
Sbjct 1337 ACAAAGATGCAGCCGGGA-TATCTTCTTCCGGATTAACTAAAGGCGAAACTCCGCGGTTG 1395
Query 1529 CGTTTGCTAGAGCAAAGTTTGCGTCAG-AACCGTGCGTTTCATCAAATGGGTATGATGGA 1587
|||||| |||| || |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1396 CGTTTGTTAGAACAGAGTTTGCGTCAGCAAC-GTGCGTTTCATCAAATGGGTATGATGGA 1454
Query 1588 ACAAGAAGCTTGGCGGCCACAACGCGGTTTGCCTGAACGCTCCGTCAATATACTTAGAGC 1647
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1455 ACAAGAAGCGTGGCGGCCACAACGCGGTTTGCCTGAACGCTCCGTTAATATACTTAGAGC 1514
Query 1648 TTGGCTCTTCGAACATTTCCTTCACCCGTATCCAAGTGATGCAGATAAACACCTATTGGC 1707
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1515 TTGGCTCTTCGAGCATTTCCTTCACCCGTATCCAAGTGATGCAGATAAACACCTCTTGGC 1574
Query 1708 TCGACAGACTGGTTTATCCAGAAATCAGGTATCAAATTGGTTCATAAATGCTAGGGTTCG 1767
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1575 TCGACAGACTGGTTTATCCAGAAATCAGGTGTCAAATTGGTTCATAAATGCTAGGGTTCG 1634
Query 1768 TTTATGGAAACCAATGGTGgaagaaatgtaccaacaagaatcaaaagaaagagaaagaga 1827
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1635 TTTATGGAAACCCATGGTGGAAGAAATGTATCAACAAGAATCAAAAGAAAGAGAAAGAGA 1694
Query 1828 a-gag--ga--a-ttagaagagaacgaagaagatcaagaaacaaaaaaCAGCAACGACGA 1881
| ||| || | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1695 AAGAGAAGAGGAATTAGAAGAGAACGAAGAAGATCAAGAAACAAAAAACAGCAACAACGA 1754
Query 1882 CAAGAGCACAAAATCCAACAACAATGAAAGCAACTTCACTGCCGTTCGGACCACTTCACA 1941
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1755 CAAGAGCACAAAATCCAACAACGATGAAAGCAACTTCACTGCCGCTCGGACCACTTCACA 1814
Query 1942 AACTCCAACGACAACCGCACCAGACGCATCAGACGCAGACGCAGCAGTAGCGACAGGCCA 2001
|||||||||||||||| || | | || |||||| || || |||||||||||||
Sbjct 1815 AACTCCAACGACAACC--AC-A--C-CA---GACGCA-AC--AG---TAGCGACAGGCCA 1859
Query 2002 CCGTCTAAGATCCAACATTAATGCTTACGAAAACGACGCTTCATCACTTCTACTCCCTTC 2061
||||||||||||| |||||||||||||||||| |||| |||||||| |||||||||||||
Sbjct 1860 CCGTCTAAGATCCGACATTAATGCTTACGAAAGCGACCCTTCATCAATTCTACTCCCTTC 1919
Query 2062 CTCTTATTCCAACGCCGCCGCTCCTGCCGCTGTTTCTGACGACTTGAATTCTCGTTACGG 2121
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1920 CTCTTATTCCAACGCCGCCGCTTCTGCCGCAGTTTCTGACGACTTGAATTCTCGTTACGG 1979
Query 2122 TGGCTCAGACGCGTTTTCCGCCGTTGCCACGTGTCAACAAAGTGTAGGTGGGTTCGATGA 2181
|||||||| ||||||||||||||||||||||||||||||| |||| || ||||| |||||
Sbjct 1980 TGGCTCAGCCGCGTTTTCCGCCGTTGCCACGTGTCAACAAGGTGTTGGCGGGTTTGATGA 2039
Query 2182 TGCTGACATGGATGGTGTTAACGTTATAAGGTTTGGGACAAACCCTACTGGTGACGTGTC 2241
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2040 TGCTGACATGGATGGGGTTAATGTTATAAGGTTTGGGACAAACCCTACTGGTGACGTGTC 2099
Query 2242 TCTCACGCTTGGTTTACGCCACGCTGGAAACATGCCTGACAAAGACGCTTCTTTCTGCGT 2301
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2100 ACTCACGCTTGGTTTACGCCACGCTGGAAACATGCCTGACAAGGACGCTTCTTTTTGCGT 2159
Query 2302 TAGAGAGTTTGGGGGTTTTTAG 2323
||||||||||||||||||||||
Sbjct 2160 TAGAGAGTTTGGGGGTTTTTAG 2181
> Ahg932374 jgi|Araly1|932374|scaffold_400362.1
Length=1922
Score = 725 bits (392), Expect = 0.0
Identities = 857/1071 (80%), Gaps = 74/1071 (7%)
Strand=Plus/Plus
Query 898 TTCTTCTAACGCATC-AC-C-TCATCATCAATACAATCAATTCAAG-A-C-TCTTCTT-- 949
||||||||||||||| | | |||||| |||| |||||| |||||| | | |||||||
Sbjct 536 TTCTTCTAACGCATCGGCTCATCATCACCAATTCAATCAGTTCAAGAATCTTCTTCTTGA 595
Query 950 G-CTAATTCTTCTCAACATCACCATCAAG-TATTAAACCAATTC-CG--ATCATC-TC-- 1001
| || ||||||||| ||||| ||||||| | | | || ||| | |||||| ||
Sbjct 596 GAATACTTCTTCTCATCATCATCATCAAGTTGTGGGA-CATTTCGGGTCATCATCATCAT 654
Query 1002 C-GGC-T-GCTTCTTCCTCTTCCA-TGGCAGCGG-TCAATATC-TTAAGAAACTCGAGGT 1055
| | | || |||| || |||| ||| || || || ||| | || || || || | |
Sbjct 655 CTCCCATGGCGGCTTCTTCATCCATTGG-AG-GGATCTATA-CGTTGAGGAATTCAAAAT 711
Query 1056 ACAC--AACGGCCGCGCAAGAGTTGTTGGAAGAGTTTTGTAGTGTTGGAAGAGGATTTTT 1113
| || ||| | || ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 712 ATACGAAAC--CGGCACAAGAGTTGTTGGAAGAGTTTTGTAGTGTTGGAAGAGGACATTT 769
Query 1114 GAAGAAGAACAAACTT-G--GGAACAGCTCAAACCCTAATACTTGCGGTGG-TGATGGTG 1169
||||||||||||||| | |||||| |||||||||||||||| |||||| || || |
Sbjct 770 CAAGAAGAACAAACTTAGTAGGAACAACTCAAACCCTAATACTACCGGTGGAGGA-GGAG 828
Query 1170 GTGGCAGCTC-TCCTTCGTCGGCCGGAGCAAACAAGGAGCATCCTCCTTTATCGGCGTCT 1228
| ||| | || | | || || |||||| ||| ||| || |||||||||| || || ||
Sbjct 829 GCGGCGGATCGT-CGTCTTCAGCCGGAACAACCAATGATAATCCTCCTTTGTCTCCGGCT 887
Query 1229 GATCGGATTGAGCATCAAAGAAGGAAA-GTGAAACTACTCACCATGCTTGAAGAGGTGGA 1287
|||||||| || |||||||||| |||| || || |||||| | |||||||||||||||||
Sbjct 888 GATCGGATAGAACATCAAAGAA-GAAAGGTCAAGCTACTCTCTATGCTTGAAGAGGTGGA 946
Query 1288 CCGACGGTACAACCATTACTGCGAGCAAATGCAGATGGTTGTGAACTCTTTCGA-CATAG 1346
||||||||||||||| |||||||| |||||||| ||||| ||||| || ||||| || ||
Sbjct 947 CCGACGGTACAACCACTACTGCGAACAAATGCAAATGGTAGTGAATTCATTCGACCA-AG 1005
Query 1347 TAATGGGCCACGGTGCGGC-ATTACCGTACACCG-CATTGGCTCAAAAAGCTATGTCAAG 1404
||||||| |||| ||||| || ||||||| || |||| |||||||| || ||||| ||
Sbjct 1006 TAATGGGTTACGGCGCGGCGGTT-CCGTACA-CGACATTAGCTCAAAAGGCAATGTCTAG 1063
Query 1405 ACATTTTAGATGCCTT-AAAGATGCAGTTGCGGCTCAGCTTAAGCAG-AGTTGCGAACTT 1462
|| || | || || ||||| || || |||| ||||||||| | | ||||| || |||
Sbjct 1064 GCACTTCCGGTG-TTTGAAAGACGCGGTAGCGGTTCAGCTTAAAC-GCAGTTGTGAGCTT 1121
Query 1463 CTTGGGGACAAAGATGCAGC-GGGAATCTCTTCTTC-CGGG-TTAACAAAAGGTGAAACT 1519
|| ||||| ||||| || || ||| || | | |||| ||||| ||||| |||||
Sbjct 1122 CTAGGGGATAAAGAGGCGGCAGGG--GCT-GGGTCCACGGGATTAACCAAAGGCGAAACG 1178
Query 1520 CCGCGTTTGCGTTTGCTAGAGCAAAGTTTGCGTCAG-AACCGTGCGTTTCATCAAATGGG 1578
||||| ||||||||||||||||| |||||||||||| || || ||||||||||| |||||
Sbjct 1179 CCGCGATTGCGTTTGCTAGAGCAGAGTTTGCGTCAGCAA-CGAGCGTTTCATCATATGGG 1237
Query 1579 TATGATGGAACAAGAAGCTTGGCGGCCACAACGCGGTTTGCCTGAACGCTCCGTCAATAT 1638
||||||||| ||||| || ||| | || ||||| |||||||||||||||||||| |||||
Sbjct 1238 TATGATGGAGCAAGAGGCATGGAGACCGCAACGTGGTTTGCCTGAACGCTCCGTTAATAT 1297
Query 1639 ACTTAGAGCTTGGCTCTTCGAACATTTCCTTCACCCGTATCCAAGTGATGCAGATAAACA 1698
|||||||||||||| ||||||||||| ||| | ||||| ||||| ||||| ||||| ||
Sbjct 1298 CCTTAGAGCTTGGCTTTTCGAACATTTTCTTAATCCGTACCCAAGCGATGCTGATAAGCA 1357
Query 1699 CCTATTGGCTCGACAGACTGGTTTATCCAGAAATCAGGTATCAAATTGGTTCATAAATGC 1758
||| || || ||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1358 CCTCTTAGCACGACAGACTGGTTTATCCAGAAATCAGGTGTCAAATTGGTTCATTAATGC 1417
Query 1759 TAGGGTTCGTTTATGGAAACCAATGGTGgaagaaatgtaccaacaagaatcaaaagaaag 1818
|||||||||| |||||||||||||||| ||||| ||||| ||||||||| ||||||||||
Sbjct 1418 TAGGGTTCGTCTATGGAAACCAATGGTAGAAGAGATGTATCAACAAGAAGCAAAAGAAAG 1477
Query 1819 agaaagagaagaggaattagaagagaacgaagaagatcaagaaacaaa-aa-aCAGCAAC 1876
|||| || | || | | ||||| || ||| || |||| || |||| || ||||||||
Sbjct 1478 AGAA-GA-A-GAAGCA---GAAGAAAATGAA-AA--TCAACAA-CAAAGAAGACAGCAAC 1527
Query 1877 GA-CGA-CAAGAGC-ACA--AAATCCAACAACAATGAAAGCAACTTCACTG 1922
| | | ||| | | ||| ||| ||||||||||||||| |||||||||||
Sbjct 1528 AAACAAACAACAACGACACGAAACCCAACAACAATGAAAACAACTTCACTG 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95377973480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5