BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36880.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490895 jgi|Araly1|490895|fgenesh2_kg.7__328__AT4G36880.1 1995 0.0
Ahg944138 jgi|Araly1|944138|scaffold_700367.1 355 4e-97
> Ahg490895 jgi|Araly1|490895|fgenesh2_kg.7__328__AT4G36880.1
Length=1373
Score = 1995 bits (1080), Expect = 0.0
Identities = 1303/1405 (93%), Gaps = 38/1405 (3%)
Strand=Plus/Plus
Query 8 ATCCCAAGTAATCCTAACTATACAAAACACATAACAATATGGCTCCTTCAACAAAAGTTC 67
|||||||||| ||| | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCCCAAGTATTCCCAGCTATCCAAAACACATAACAATATGGCTCCTTCAACAAAAGTTC 60
Query 68 TCTCTTTACTTCTCTTATATGTCGTCGTGTCATTAGCCTCCGGTGATGAGTCCATCATCA 127
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 TCTCTTTACTTCTCTTATATGTCGTCGTTTCATTAGCCTCCGGTGATGAGTCCATCATCA 120
Query 128 ACGACCATCTCCAACTTCCATCGGACGGCAAGTGGAGAACCGATGAAGAAGTGAGGTCCA 187
|||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 121 ACGACCATCTCCAACTTCCATCAGACAGCTGGTGGAGAACCGATGAAGAAGTGAGGTCCA 180
Query 188 TCTACTTACAATGGTCCGCAGAACACGGGAAAACTAACAACAACAACAACGGTATCATCA 247
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTATTTACAATGGTCCGCAGACCACGGGAAAACTAACAACAACAACAACGGTATCATCA 240
Query 248 ACGACCAAGACAAAAGATTCAATATTTTCAAAGACAACTTAAGATTCATCGATCTACACA 307
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 ACGACCAAGACAAAAGATTCAATATTTTCAAAGACAACTTAAGATTCATTGATCTACACA 300
Query 308 ACGAAAACAACAAGAACGCTACTTACAAGCTTGGTCTCACCAAATTTACCGATCTCACTA 367
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACGAAAAGAACAAGAACGCTACTTACAAGCTTGGTCTCACCAAATTTACCGATCTCACTA 360
Query 368 ACGATGAGTACCGCAAGTTG-TACCTCGGGGCAAGAACTGAGCCCGCCCGCCGCATCGCT 426
|||| |||||||| | ||| || |||||||||||||| ||||||| ||||||||||||
Sbjct 361 ACGAAGAGTACCGGA-GTTTATATCTCGGGGCAAGAACCGAGCCCGTCCGCCGCATCGCG 419
Query 427 AAGGCCAAGAATGTCAACCAGAAATACTCAGCCGCTGTAAACGGCAAGGAGGTTCCAGAG 486
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 420 AAGGCCAAGAATGTCAACCAGAAATACTCAGCCGCAGTAGACGGCAAGGAGGTTCCAGAG 479
Query 487 ACGGTTGATTGGAGACAGAAAGGAGCCGTTAACCCCATCAAAGACCAAGGAACTTGCGGA 546
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACGGTTGATTGGAGACTGAAGGGAGCCGTTAACCCCATCAAAGACCAAGGAACTTGCGGA 539
Query 547 AGTTGTTGGGCGTTTTCGACTA-CTGCAGCAGTAGAAGGTATAAACAAGATCGTAACAGG 605
|||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||
Sbjct 540 AGTTGTTGGGCGTTTTCGAC-AGCTGCAGCAGTAGAAGGCATAAACAAGATCGTAACAGG 598
Query 606 AGAACTCATATCTCTATCAGAACAAGAACTTGTTGACTGCGACAAATCCTACAATCAAGG 665
||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 599 AGAACTCATATCTTTATCAGAACAAGAACTTGTCGACTGCGACAATTCCTACAATCAAGG 658
Query 666 TTGCAACGGCGGTTTAATGGACTACGCTTTTCAATTCATCATGAAAAATGGTGGCTTAAA 725
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTGCAACGGCGGTTTGATGGACTACGCTTTTCAATTCATCATGAAAAATGGTGGCTTAAA 718
Query 726 CACTGAGAAAGATTATCCTTACCGTGGATTCGGCGGAAAATGCAATTCTTTCTTGAAGAA 785
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 719 AACCGAGAAAGATTATCCTTACCGTGGATTCGGCGGCAAATGCAATTCTTTCTTGAAGAA 778
Query 786 TTCTAGAGTTGTGAGTATTGATGGGTACGAAGATGTTCCTACTAAAGACGAGACTGCGTT 845
| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 779 TGCTAAAGTTGTGAGTATTGATGGGTACGAAGATGTTCCTACAAAAGACGAGACGGCGTT 838
Query 846 GAAGAAAGCTATTTCATACCAACCGGTTAGTGTAGCTATTGAAGCCGGTGGAAGAATTTT 905
||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GAAGAGAGCAATTTCATTGCAACCGGTTAGTGTAGCTATTGAAGCCGGTGGAAGAATTTT 898
Query 906 TCAACATTACCAATCGGGTATTTTTACCGGAAGTTGTGGTACAAATCTTGATCACGCGGT 965
|||||||||||| | || || || || |||| ||||||||| |||||||||||||||||
Sbjct 899 CCAACATTACCAAACCGGAATCTTCACGGGAAATTGTGGTACGAATCTTGATCACGCGGT 958
Query 966 GGTTGCTGTCGGGTACGGATCAGAGAACGGTGTTGACTACTGGATTGTAAGGAACTCTTG 1025
|||||| ||||||||||| |||||||||||||||||||| ||||| || |||||||||||
Sbjct 959 GGTTGCGGTCGGGTACGGGTCAGAGAACGGTGTTGACTATTGGATCGTGAGGAACTCTTG 1018
Query 1026 GGGTCCACGTTGGGGTGAGGAAGGTTACATTAGAATGGAGAGAAACTTGGCAGCCTCCAA 1085
||||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||
Sbjct 1019 GGGTCCACGTTGGGGTGAGGAAGGTTACATTAGGATGGAGAGAAACTTGGCGGCTTCTAA 1078
Query 1086 ATCCGGTAAGTGTGGGATTGCGGTTGAAGCCTCGTACCCGGTTAAGTACAGCCCAAACCC 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATCCGGTAAGTGTGGGATTGCGGTTGAAGCCTCGTACCCGGTTAAGTACAGCCCAAACCC 1138
Query 1146 GGTTCGTGGAAATACTATCAGCAGTGTTTGA-AATCAAGACGCTCGATAAACA-T-TT-G 1201
||||||||||| || | ||||||||||||| ||| ||||||||||||||| | | || |
Sbjct 1139 GGTTCGTGGAAGTA-T--CAGCAGTGTTTGAGAATGAAGACGCTCGATAAAAAATATTCG 1195
Query 1202 GGATTCTTATAACTGAATTTAATCTCGTATTGTTATTATTGTTTGTATGTATAGTATTTC 1261
|||||||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1196 GGATTCTTATAATTGAATT-AATCTCGTATT---ATTATTGTTTGTATGTATAGTA---- 1247
Query 1262 AACAACAATTTCAAAAATTAGTTGATTCATCATAAGGATATAAAATTTATAAATCCTTAT 1321
|| || | | |||||||||||||||||||||||| |||||||||||||||
Sbjct 1248 AA-AAG--T---A-------GTTGATTCATCATAAGGATATAAACTTTATAAATCCTTAT 1294
Query 1322 GTCGATCAATTTCTTTTTTATTCAAAGAAAGATTGTTTGCTTGTTTTATGTATTAAGAGA 1381
|||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||
Sbjct 1295 GTCGATCAATTTCTTTTT-ATTCAAAGAAAGATTG----CTTGTTT-ATGTATTAAGAGA 1348
Query 1382 AATATAATAAAATGATATATTTCTT 1406
|||||||||||||||||||||||||
Sbjct 1349 AATATAATAAAATGATATATTTCTT 1373
> Ahg944138 jgi|Araly1|944138|scaffold_700367.1
Length=340
Score = 355 bits (192), Expect = 4e-97
Identities = 233/252 (92%), Gaps = 6/252 (2%)
Strand=Plus/Plus
Query 945 TACAAATCTTGATCACGCGGTGGTTGCTGTCGGGTACGGATCAGAGAACGGTGTTGACTA 1004
||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 90 TACGAATCTTGATCACGCGGTGGTTGCGGTCGGGTACGGGTCAGAGAACGGTGTTGACTA 149
Query 1005 CTGGATTGTAAGGAACTCTTGGGGTCCACGTTGGGGTGAGGAAGGTTACATTAGAATGGA 1064
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 150 TTGGATTATAAGGAACTCTTGGGGTCCACGTTGGGGTGAGGAAGGTTACATTAGGATGGA 209
Query 1065 GAGAAACTTGGCAGCCT-CCAAATCCGGTAAGTGTGGGATTGCGGTTGAAGCCTCGTACC 1123
||||||||||||||| | |||||||||||| |||||||||||||||||||||| ||||||
Sbjct 210 GAGAAACTTGGCAGC-TGCCAAATCCGGTATGTGTGGGATTGCGGTTGAAGCCCCGTACC 268
Query 1124 CGGTTAAGTACAGCCCAAACCCGGTTCGTGGAAATACTATCAGCAGTGTTTGA-AATCAA 1182
|||||||| |||||||||||||||||||||||| || | || |||||||||| ||| |
Sbjct 269 CGGTTAAGCACAGCCCAAACCCGGTTCGTGGAAGTA-T--CAACAGTGTTTGATAATGAT 325
Query 1183 GACGCTCGATAA 1194
||||||||||||
Sbjct 326 GACGCTCGATAA 337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5