BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36890.1
Length=2187
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944140 jgi|Araly1|944140|scaffold_700369.1 2569 0.0
Ahg496876 jgi|Araly1|496876|fgenesh2_kg.8__2692__AT5G67230.1 318 9e-86
> Ahg944140 jgi|Araly1|944140|scaffold_700369.1
Length=1607
Score = 2569 bits (1391), Expect = 0.0
Identities = 1544/1617 (95%), Gaps = 13/1617 (1%)
Strand=Plus/Plus
Query 137 AGAGGTCAACGAAGAAGATGAAGCTCTCTGCTTTACATCAGAGTTACTTAAATCGCCGGA 196
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 4 AGAGGTCAACGAAGAAGATGAAGCTCTCTGCTTTACATCAGAGTTACTTGAATCGTCGGA 63
Query 197 GTAATAGCTTCAGATCTCCGACGTCTCTTGATTCTTCCGTTGATGGCTCCGGGAAGTCTT 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GTAATAGCTTCAGATCTCCGACGTCTCTTGATTCTTCCGTTGATGGCTCCGGGAAGTCTT 123
Query 257 TAATCGCTGTGTTTTGGCTTATCCTGCACTGTCTTTGTTGCTTGATTAGTCTAGTTCTCG 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 124 TAATCGCTGTGTTTTGGCTTATCCTGCACTGTCTTTGTTGCTTGATTAGTCTAGTCCTCG 183
Query 317 GCTTTCGATTCTCCAGATTAGtcttcttcttcctcttctctacttcttcaaccaatctct 376
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 184 GCTTTCGATTCTCCAGATTAGTCTTCTTCTTCCTCTTCTCTACTTCTTCAACGAATCTCT 243
Query 377 actctcttcCGTTTCGTCCTGACTTACCTGTGAAACACCTCGATGTTCACACAATCGGCC 436
||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 244 ACTCTGTTCCGTTTCGTCCTGACTTACCGGTGAAGCACCTCGATGTTCACACAATCGGCC 303
Query 437 GTACTCTCGATCCCGGAGCTAACGGAACGACGGTGGTGGCGACGGCGACGAAAAGCTCTC 496
||| ||| ||||||||||| ||||| ||| |||||||| ||||||||| |||||||
Sbjct 304 GTAATCTGGATCCCGGAGCAAACGG---GAC---GGTGGCGATGGCGACGAAGAGCTCTC 357
Query 497 GTGTTGTTGTTGGAAGACACGGGATCCGGATCCGTCCTTGGCCGCATCCGAATCCCGTTG 556
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 358 GTGTTGTCGTTGGAAGACACGGGATCCGGATCCGGCCTTGGCCGCATCCGAATCCCGTCG 417
Query 557 AGGTAATGAAAGCTCATCAGATCATTGGGAGAGTTCAAAAAGAGCAAAAGATGATCTTTG 616
||||||||||||||||| |||||||| ||||||||| || |||||||||| |||||||
Sbjct 418 AGGTAATGAAAGCTCATGGGATCATTGAGAGAGTTCAGAAGGAGCAAAAGACCATCTTTG 477
Query 617 GGATGAAAAGTAGTAAGATGGTTATAGCTGTGACACCGACTTATGTGAGGACTTTTCAAG 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGATGAAAAGTAGTAAGATGGTTATAGCTGTGACACCGACTTATGTGAGGACTTTTCAAG 537
Query 677 CTTTGCATTTGACTGGTGTGATGCATTCTTTGATGCTTGTTCCTTATGATCTGGTTTGGA 736
|||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||
Sbjct 538 CTTTGCATTTGACTGGTGTGGTGCATTCGTTGATGCTTGTTCCTTATGATGTGGTTTGGA 597
Query 737 TCGTTGTTGAAGCTGGTGGTGCTACTAATGAGACCGGTTTGATTATTGCAAAATCAGGAC 796
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 598 TCGTTGTTGAAGCTGGTGGTGCTACTAATGAGACGGGTTTGATTATTGCTAAATCAGGGC 657
Query 797 TTAGGACCATTCATGTTGGGATTGATCAGAGAATGCCTAATACTTGGGAAGATCGTAGTA 856
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 658 TTAGGACGATTCATGTTGGGATTGATCAAAGAATGCCTAATACTTGGGAGGATCGTAGTA 717
Query 857 AATTAGAAGTCTTTATGAGACTTCAAGCTTTGAGAGTTGTGAGGGAAGAGAAGCTTGATG 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AATTAGAAGTCTTTATGAGACTTCAAGCTTTGAGAGTTGTGAGGGAAGAGAAGCTTGATG 777
Query 917 GGATTGTGATGTTTGCGGATGATAGTAATATGCATAGTATGGAGTTGTTTGATGAGATTC 976
|||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 778 GGATTGTGATGTTTGCGGATGATAGTAATATGCATAGTATGGAGTTCTTTGACGAAATTC 837
Query 977 AGAATGTGAAGTGGTTTGGTACTGTTTCTGTTGGGATATTGGCTCATTCAGGAAATGCgg 1036
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 838 AGAATGTGAAGTGGTTTGGTACTGTTTCTGTTGGGATATTGGCGCATTCGGGGAATGCGG 897
Query 1037 aagagatggttttgtcgatggaaaagaggaaagagatggagaaagaggaagaagaggaga 1096
||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 898 AAGAGATGGTTATGTCGATGGATAAGAGGAAAGAGATGGAGAAAGAGGAAGAGGAGGAGA 957
Query 1097 gCTCTTCGTTACCTGTACAGGGTCCTGCTTGTAACTCAACTGATCAGTTGATTGGTTGGC 1156
|||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GCTCTTTGTTACCGGTACAAGGTCCTGCTTGTAACTCAACTGATCAGTTGATTGGTTGGC 1017
Query 1157 ATATTTTCAATACATTGCCATATGCGGGGAAGAGTGCAGTTTATATAGATGATGTTGCTG 1216
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1018 ATATTTTCAATACATTGCCGTATGCGGGGAAGAGTGCGGTTTATATAGATGATGTTGCTG 1077
Query 1217 CGGTTTTGCCTCAAAAACTAGAGTGGTCTGGGTTTGTGTTGAACTCGAGATTGCTTTGGG 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CGGTTTTGCCTCAAAAACTAGAGTGGTCTGGGTTTGTGTTGAACTCGAGATTGCTTTGGG 1137
Query 1277 AGGAAGCTGAGAATAAGCCAGAGTGGGTTAAGGACTTTGGGTCGTTGAATGAGAATGAAG 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AGGAAGCTGAGAATAAGCCAGAGTGGGTTAAGGACTTTGGGTCGTTGAATGAGAATGAAG 1197
Query 1337 GTGTGGAGAGTCCTTTGTCTCTGTTGAAGGATCCTTCAATGGTGGAGCCTCTTGGAAGCT 1396
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1198 GTGTGGAGAGTCCTTTGTCTCTATTGAAGGATCCTTCAATGGTGGAACCTCTTGGAAGCT 1257
Query 1397 GTGGAAGACAAGTTCTGCTATGGTGGCTTCGAGTAGAAGCACGCGCTGATAGCAAATTCC 1456
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1258 GTGGAAGACAGGTTCTGCTATGGTGGCTTCGAGTTGAAGCACGAGCTGATAGCAAATTCC 1317
Query 1457 CTCCCGGATGGATAATTGATCCTCCGTTAGAGATCACAGTTGCGGCTAAACGCACTCCAT 1516
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1318 CTCCCGGATGGATAATTGATCCTCCGTTAGAGATTACAGCCGCGGCTAAACGCACTCCAT 1377
Query 1517 GGCCAGATGTTCCTCCTGAGCCACCAACTAAAAAGAAAGATCAAATGCCATTATCCCAAG 1576
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1378 GGCCAGATGTTCCTCCTGAGCCACCAACCAAAAAGAAAGATCAAATGCCATTATCCCAAG 1437
Query 1577 GCAACACCGTCGTGGTAATACCAAAGCAGCAACAACATCCAACGAAAATCCGAAAACCGA 1636
|||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||
Sbjct 1438 GCAACACCGTCGTGGTAATACCGAAGCAGCAACAACATGCAACCAAAATCCGAAAACCGA 1497
Query 1637 AACGCAAAAGTAAGAAAAGTAAACACGAACCTAGACCAACCGATACAACAACACAAGTTT 1696
|||||| ||||||||||| ||||||||||||||||||||| |||||| ||| ||||
Sbjct 1498 AACGCAGAAGTAAGAAAAATAAACACGAACCTAGACCAACGGATACA-CAA-----GTTT 1551
Query 1697 ATTCATCTTCGTCTAAGCATCaagaaagaaactgagaaaagaagaaaaaagCTTTTG 1753
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1552 ATTCATCTTCGTCTAAGCATCAAGAAAGAAACTGAGAAAAGAAGAAAAAA-CTTTTG 1607
> Ahg496876 jgi|Araly1|496876|fgenesh2_kg.8__2692__AT5G67230.1
Length=1560
Score = 318 bits (172), Expect = 9e-86
Identities = 392/493 (80%), Gaps = 36/493 (7%)
Strand=Plus/Plus
Query 478 ACGGCGACGAA-AAGCTCTCGTGTTGTTGTTGGAAGACACGGGATCCGGATCCGTCCTTG 536
|||| || ||| || |||||| || || ||||||||||||||||||||||||||||| ||
Sbjct 325 ACGGTGAAGAAGAA-CTCTCGAGTGGTGGTTGGAAGACACGGGATCCGGATCCGTCCATG 383
Query 537 GCCGCATCCGAATCCCG-TTGAGGTAATGAAAGCTCATCAGAT-CATTGGGAGAGTTCAA 594
||| || |||||||| | ||||||| ||| |||||||||| | | ||| |||||| ||
Sbjct 384 GCCTCACCCGAATCC-GATTGAGGTCTTGAGAGCTCATCAGTTGC-TTGTGAGAGTACAG 441
Query 595 AAAGAGCAAAAGAT-GATCTTTGG-GATGAAAAGTAGTAAGA-TGGTTATAGCTG-TGAC 650
|||||||| || || ||| | || | ||| || ||||| || | || | || ||||
Sbjct 442 AAAGAGCAGAA-ATCGATGTACGGTG-TGAGGAGCCCTAAGACTG-TGATTG-TGGTGAC 497
Query 651 ACCGACTTATGTGA-GGACTTTTCAAGCT-TTGCATTTGACTGGTGTGATGCATTCT-TT 707
||||||||||| | ||||||| || || || |||||||| || || ||||| || ||
Sbjct 498 GCCGACTTATGT-ACGGACTTTCCAGGCGCTT-CATTTGACCGGAGTTATGCACTCGCTT 555
Query 708 GATGCTTGTTCCTTATGATCTGGTTTGGATCGTTGTTGAAGCTGGTGG--TGCTACTAAT 765
|||||||||||||| ||| |||||||||||||||| ||||||||||| | | || ||
Sbjct 556 -ATGCTTGTTCCTTACGATTTGGTTTGGATCGTTGTGGAAGCTGGTGGAAT-C-ACCAAC 612
Query 766 GAGACCGGTTTGATTATTGCAAAATCAGGACTT-AGGACCATTCATGTTGGGATT-GATC 823
||||| | || | |||| |||||||||||| || | ||| ||||| || ||||| ||||
Sbjct 613 GAGACTGCTTCGTTTATCGCAAAATCAGGA-TTGAAGACGATTCAC-TTAGGATTCGATC 670
Query 824 AGAGAATGCCTAATACTTGGGAAGATCGT-AGTAAATTAGAAGTCTTTA-TGAGACTTCA 881
||| ||||||||||||||||||||||||| | ||||| || | | | ||||||||||
Sbjct 671 AGAAAATGCCTAATACTTGGGAAGATCGTCAC-AAATTGGA-GACCAAAATGAGACTTCA 728
Query 882 AGCTTTGAGAGTTGTGAGGGAAGA-GAAGCTT-GATGGGATTGTGATGTTTGCGGATGAT 939
|| |||||| | ||||| || || |||| || ||||||||| | |||||||| ||||||
Sbjct 729 CGCCTTGAGAATCGTGAGAGA-GAAGAAG-TTAGATGGGATTCTTATGTTTGCTGATGAT 786
Query 940 AGTAATATGCATA 952
|| ||||||||||
Sbjct 787 AGCAATATGCATA 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82313019445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5