BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36910.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490898 jgi|Araly1|490898|fgenesh2_kg.7__331__AT4G36910.1 1759 0.0
> Ahg490898 jgi|Araly1|490898|fgenesh2_kg.7__331__AT4G36910.1
Length=1206
Score = 1759 bits (952), Expect = 0.0
Identities = 1141/1227 (93%), Gaps = 34/1227 (3%)
Strand=Plus/Plus
Query 8 GTTTAGCCATTAAAGTCACAGTCACACTTTCGCTTTTCCCAATACGAACAAGCGGTGACG 67
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2 GTTTAGCCATTAAAGTCACAGTCACACTTTCGCTTTTCCCAATACAAACAAGCGGTGACG 61
Query 68 CATATCTCCTGTAT-CATCACTCTTTTACTTCCGGCGATCTCTCTCCGACGGCCAATGGA 126
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CATATCTCCT-CCTCCATCACTCTTTTACTTCCGGCGATCTCTCTCCGACGGCCAATGGA 120
Query 127 CGCCGTCCTTTACTCTGTTCCACTCTCCTTCACTCCCCTACGCGCATCATCCTCTCCTTC 186
||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 121 CGCCGTCCTATACTCTGTTCCACTCTCCTTCACGCGCCTACGCGCATCATCCTCTCCTTC 180
Query 187 CTCGCCGTATCTTCTTCTGCCGAGGTTTCTCTCCGTTCAGCCATGTCACAAATTCACCTT 246
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCGCCGTATCTTCTTCCGCCGAGGTTTCTCTCCGTTCAGCCATGTCACAAATTCACCTT 240
Query 247 CTCTCGAAGCTTCCCTTCCAAATCCCGGATTCCCTCAGCTTCTTCCGCCGCCGGTTCCAC 306
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 241 CTCTCGAAGCTTCCCTTCCAAATCCAGGATTCCTTCAGCTTCTTCCGCCGCCGGTTCCAC 300
Query 307 GTTGATGACGAATTCCTCTTCGCCAAGAAGTGGAGTGTACACTGTTGGTGAGTTCATGAC 366
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTGATGAAGAATTCCTCTTCGCCAAGAAGTGGAGTGTACACTGTTGGTGAGTTCATGAC 360
Query 367 AAAGAAAGAGGACTTGCACGTGGTGAAACCTACGACTACTGTGGATGAAGCTCTGGAACT 426
|||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 AAAGAAGGATGACTTGCACGTGGTGAAACCTACGACTACTGTGGATCAAGCTCTGGAACT 420
Query 427 CCTTGTGGAGAATAGAATCACTGGATTTCCTGTAATTGACGAAGACTGGAAATTGGTTGG 486
|||||||||||||||||| || ||||||||||| || || || |||||||||||||||||
Sbjct 421 CCTTGTGGAGAATAGAATTACAGGATTTCCTGTGATAGATGACGACTGGAAATTGGTTGG 480
Query 487 GCTTGTTTCAGATTATGACTTGTTGGCTTTGGACTCCATATCTGGTAGTGGAAGAACAGA 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTTGTTTCAGATTATGACTTGTTGGCTTTGGACTCCATATCTGGTAGTGGAAGAACAGA 540
Query 547 AAATTCCATGTTCCCTGAGGTTGACAGCACCTGGAAAACTTTCAATGCTGTGCAAAAGCT 606
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 541 GAATTCCATGTTCCCTGAGGTTGACAGCACTTGGAAAACTTTCAATGCAGTGCAAAAGCT 600
Query 607 ACTCAGCAAAACCAATGGGAAGCTTGTTGGAGATTTAATGACACCAGCTCCACTAGTTGT 666
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 ACTCAGCAAAACCAATGGGAAGCTTGTTGGAGATTTAATGACACCGGCTCCACTAGTTGT 660
Query 667 TGAGGAAAAAACCAACCTGGAAGATGCTGCTAAAATATTGCTTGAGACAAAATATCGCCG 726
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGAGGAAAAAACCAACCTCGAAGATGCTGCTAAAATATTGCTTGAGACAAAATATCGCCG 720
Query 727 GCTCCCTGTGGTAGATTCTGATGGCAAATTGGTTGGTATCATCACAAGAGGAAACGTGGT 786
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 721 GCTCCCTGTGGTAGATTCTGATGGCAAATTGGTCGGTATTATCACAAGAGGAAACGTGGT 780
Query 787 TAGAGCCGCGCTTCAAATAAAGCGCTCTGGTGATAGGAATGCTTGATTAAGGTAGTATAT 846
|||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 781 TAGAGCCGCGCTTCAAATAAAGCGTTCTGGTGATAGGAATGCTTGATTAAGATA-TATAT 839
Query 847 ATACCAAACAAGAAAATGGCTTTGTAGAGGAAAGCAATGATCAAACATTCTCCAGAGAAT 906
|| ||| |||||||| |||||||||| ||||||||||||||||| |||||||||||||
Sbjct 840 C-AC-AAAGAAGAAAATAGCTTTGTAGAAGAAAGCAATGATCAAACCTTCTCCAGAGAAT 897
Query 907 AAAAGTGAGAAACCGCGACAATTGTACCATGTATTAG-A-A-TAAGAGCCATAACTTATA 963
||||||||||||||| |||||||||| |||||||||| | | ||||| ||||||||| ||
Sbjct 898 AAAAGTGAGAAACCGTGACAATTGTATCATGTATTAGTAGAATAAGAACCATAACTTGTA 957
Query 964 CGACATTTTGCAACGAAGTTAAACCTGG-TA--AA-CTCTAGAAGCATCAAAGGTAAGTG 1019
||| |||||| ||||||||| |||| || || ||| ||||| |||||||||||||
Sbjct 958 TTACAGTTTGCATCGAAGTTAAGCCTGCCTAGTAATCTCGAGAAGAATCAAAGGTAAGT- 1016
Query 1020 CACATCTAACTTTTTGCTATTTTAGCAGAATCAGCTTCTCTGTTTGTTTGATAAGTTAGG 1079
| | ||| ||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1017 ----T-T---TTT---CTATTTTTGCAGAATCAGCTTCTCTGTTTGTTTGATGGGTTAGG 1065
Query 1080 TTATCAGATGCTTTGGGTATTTGACTCTCATCCAAT-ATGCTTTCATTTCGAGaa-aaaa 1137
||||||||| |||||||||||||| ||||||||||| |||||||| || || || ||||
Sbjct 1066 TTATCAGATTCTTTGGGTATTTGATTCTCATCCAATTATGCTTTC-TTA-GA-AAGAAAA 1122
Query 1138 aaaaa-TTGTTTCAC-ACTTTCTACATTTGGTTAACCACCAAAGTAACAAACCTTTTTAA 1195
||||| ||||||| | ||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1123 AAAAACTTGTTTC-CTACTTTCTACATTTGGTTAACCACCAAAGTAACAG-CCTTTT-AA 1179
Query 1196 GGTATTTTAATTGATTTTGGTTCAACC 1222
|||||||||||||||||||||||||||
Sbjct 1180 GGTATTTTAATTGATTTTGGTTCAACC 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5