BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36930.1
Length=1511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353119 jgi|Araly1|353119|fgenesh1_pg.C_scaffold_7000292 1568 0.0
> Ahg353119 jgi|Araly1|353119|fgenesh1_pg.C_scaffold_7000292
Length=1065
Score = 1568 bits (849), Expect = 0.0
Identities = 1013/1087 (93%), Gaps = 32/1087 (3%)
Strand=Plus/Plus
Query 86 ATGGGAGATAAGAAATTGATTTCATCTTCTTCTTCTTCCTCGGTTTACG--A-TACTCGT 142
||||||||||||||||||| || ||||||||||||||||||||||||| | |||||||
Sbjct 1 ATGGGAGATAAGAAATTGA-TT--TCTTCTTCTTCTTCCTCGGTTTACGATACTACTCGT 57
Query 143 ATCAATCATCATCTTCATCATCCTCCGTCTTCTTCCGACGAAATCTCTCAGTTTCTCCGG 202
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 ATCAATCATCA---TCATCATCCTCCGTCTTCTTCCGACGAAATCTCTCAGTTTCTCCGG 114
Query 203 CATATTTTCGACCGTTCTTCTCCTTTACCTTCTTACTACTCCCCGGCGACGACTACAACG 262
|||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 115 CATATTTTCGACCGTTCTTCTCCTTTACCTTCTTACTATTCTCCGGCGACGACGACGACA 174
Query 263 ACGGCGTCTTTGATTGGTGTGCACG-GGAGCGGTGACCCACATGCAGATAACTCGAGAAG 321
||| | || ||||||||||||| | | |||||||||||||||||||||||||| |||
Sbjct 175 ACGACTTCAATGATTGGTGTGCAAGTTCA-CGGTGACCCACATGCAGATAACTCGACAAG 233
Query 322 TCTCGTTTCTCATCATCCACCGTCAGATTCTGTGCTTATGTCGAAACGTGTCGGAGATTT 381
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 234 TCTCGTTTCTCATCATCCACCGTCGGATTCTGTGCTCATGTCGAAACGTGTCGGAGATTT 293
Query 382 CTCTGAGGTTTTAATCGGCGGAGGATCAGGCTCAGCCGCCGCGTGTTTTGGTTTCTCCGG 441
||||||||||||||| | || | || || | |||||||||||||||||||||
Sbjct 294 CTCTGAGGTTTTAAT---C---GG--C-GG---AG--G-CGCGTGTTTTGGTTTCTCCGG 338
Query 442 TGGTGGTAATAATAACAACGTTCAAGGAAATAGCTCTGGGACTCGAGTATCGTCTTCTTC 501
||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 339 TGGTGGTAATAATAATAACGCTCAGGGAAATAGCTCTGGGACTCGAGTATCGTCTTCTTC 398
Query 502 CGTTGGAGCTAGTGGCAACGAGACAGATGAGTATGACTGTGAAAGCGAGGAAGGAGGAGA 561
|||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 399 TGTTGGAGCTAGTGGAAACGAGACCGATGAGTATGACTGCGAAAGCGAGGAAGGAGGAGA 458
Query 562 AGCTGTAGTTGATGAAGCTCCCTCTTCCAAGTCAGGTCCTTCTTCTCGTAGTTCATCTAA 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 AGCTGTAGTTGATGAAGCTCCCTCTTCCAAGTCAGGTCCTTCTTCTCGTAGTTCATCTAA 518
Query 622 AAGATGCAGAGCTGCTGAAGTTCATAATCTCTCTGAGAAGAGGAGGAGAAGTAGAATTAA 681
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 519 GAGATGCAGAGCTGCTGAAGTTCATAATCTCTCTGAGAAGAGGAGGAGAAGTAGAATCAA 578
Query 682 TGAAAAAATGAAAGCTTTACAAAGTCTCATCCCTAATTCAAATAAGACGGATAAGGCTTC 741
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 579 TGAAAAAATGAAAGCTTTGCAGAGTCTCATCCCTAATTCAAATAAGACGGATAAGGCTTC 638
Query 742 AATGCTTGATGAAGCCATTGAGTATCTGAAACAGCTTCAGCTCCAAGTTCAGATGTTGAC 801
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 639 AATGCTTGATGAAGCCATTGAATATCTGAAACAGCTTCAGCTCCAAGTTCAGATGTTGAC 698
Query 802 TATGAGAAATGGAATAAACTTGCATC--C-TTTGTGTTTACCTGGAACTACATTACACCC 858
||||||||||| |||||||| |||| | |||||| |||||||||||||||||||| ||
Sbjct 699 AATGAGAAATGGGATAAACTTACATCATCCTTTGTGCTTACCTGGAACTACATTACATCC 758
Query 859 ATTGCAACTCTCTCAGATTCGACCCCCTGAAGCAACCAATGATCCTCTGCTTAATCATAC 918
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 759 ATTGCAACTCTCTCAGATTCGACCCCCAGAAGCAACCAATGATCCTCTGCTCAATCATAC 818
Query 919 CAATCAGTTTGCTTCGACTTCTAATGCACCGGAAATGATCAATACTGTGGCTTCTTCATA 978
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 819 CAATCAGTTTGCTTCGACTTCTAATGCACCGGAAATGATCAATACCGTGGCTTCTTCATA 878
Query 979 CGCTTTGGAACCTTCTATTCGCAGTCACTTTGGACCTTTCCCTC-TC-C-TTACTTCACC 1035
||| ||||||||||| |||||||||||||||||||||||||||| || | ||| ||||||
Sbjct 879 CGCATTGGAACCTTCCATTCGCAGTCACTTTGGACCTTTCCCTCCTCTCCTTAATTCACC 938
Query 1036 CGTGGAGATGAGTCGGGAAGGTGGGTTAACTCATCCAAGGTTGAACATTGGTCATTCCAA 1095
|| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 939 CGCGGAGATGAGTCGGGAAGGAGGGTTAACTCATCAAAGGTTGAACATTGGTCATTCCAA 998
Query 1096 CGCAAACATAACCGGGGAACAAGCTCTGTTTGATGGACAACCTGACCTAAAAGATCGAAT 1155
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 CGCAAACTTAACCGGGGAACAAGCTCTGTTTGATGGACAACCTGACCTAAAAGATCGAAT 1058
Query 1156 TACTTGA 1162
|||||||
Sbjct 1059 TACTTGA 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56564013825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5