BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36940.1
Length=2132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888342 jgi|Araly1|888342|Al_scaffold_0007_328 2630 0.0
Ahg481212 jgi|Araly1|481212|fgenesh2_kg.4__272__AT2G23420.1 1051 0.0
Ahg936051 jgi|Araly1|936051|scaffold_500242.1 359 5e-98
Ahg936036 jgi|Araly1|936036|scaffold_500227.1 359 5e-98
Ahg328051 jgi|Araly1|328051|fgenesh1_pm.C_scaffold_7000278 244 2e-63
> Ahg888342 jgi|Araly1|888342|Al_scaffold_0007_328
Length=1608
Score = 2630 bits (1424), Expect = 0.0
Identities = 1545/1605 (96%), Gaps = 2/1605 (0%)
Strand=Plus/Plus
Query 84 ATGGAGAAGAAAGAAAATGGTCTCGATG-GAAAGCAATCGGGTCGGGTCATTAACGGACC 142
|||||||||||||| || |||||||||| | |||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGAAAGAGAACGGTCTCGATGTG-AAGCAATCGGGTCGGGTCATTAACGGACC 59
Query 143 CACTAACCCGATGGTCACACCTCTGCTCAACGATCTTTACCAATTCACCATGGCTTATGC 202
||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 60 CACTAACCCAATGGTCACACCTCTCCTCAACGATCTTTACCAATTCACCATGGCCTATGC 119
Query 203 TTATTGGAAAGCTGGCAAACAATCTGAGCGATCTGTGTTTGATCTGTATTTTCGTAAGAA 262
|||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct 120 TTATTGGAAAGCTGGCAAACAATCCGAACGATCTGTGTTTGATTTGTATTTTCGTAAGAA 179
Query 263 TCCTTTTGGTGGAGAATACACTATCTTTGCTGGTTTAGAAGAATGCATCAAATTTCTCGC 322
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 TCCATTTGGTGGAGAATACACTATCTTTGCTGGTTTAGAAGAATGCATCAAATTCCTCGC 239
Query 323 TAATTTCAATTTGACTGATGAAGAGATCGATTTCGTTCGTGATTCGTTACCTGGATGTGA 382
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 TAATTTCAATTTGACTGATGAAGAGATCGATTTTGTTCGTGATTCGTTACCTGGATGTGA 299
Query 383 GGAAGCTTTCTGTGATTATCTTCGAGGGCTTGATTGTTCTGACATTGAAGTGTATGCCAT 442
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 300 GGAAGCTTTTTGTGATTATCTTCGAGGACTTGATTGTTCTGACATTGAAGTGTATGCAAT 359
Query 443 TTCGGAAGGATCAGTTGTTTTTCCTAAAGTTCCTTTACTCAGAATCGAAGGTCCTGTTGC 502
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TTCGGAAGGATCAGTTGTCTTCCCTAAAGTTCCTTTACTCAGAATTGAAGGTCCTGTTGC 419
Query 503 TGTGGTGCAATTGTTGGAAACTCCATTCCTCAATCTCATCAATTACGCATCTTTGGTTGC 562
||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 420 TGTTGTGCAATTGTTGGAAACTCCGTTTCTCAATCTCATCAATTATGCATCTTTGGTTGC 479
Query 563 TACAAATGCAGCAAGACATCGGTTTGTTGCAGGAAAATCTAAGCTTCTGCTTGAGTTTGG 622
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 TACTAATGCAGCAAGACATCGGTTTGTTGCCGGAAAATCTAAGCTTCTGCTTGAGTTTGG 539
Query 623 TGCTAGAAGAGCTCAGGGACCCGATGGTGCAATAAGCGCATCAAAGTATTGCTACCTTGG 682
|||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 540 TGCTCGAAGAGCTCAGGGACCCGATGGCGCAATAAGCGCATCAAAATATTGCTACCTTGG 599
Query 683 AGGTTTTGATGCAACAAGTAATGTTGCAGCGGGAAAACTGTTTGGGATACCCCTCCGTGG 742
|||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||
Sbjct 600 AGGTTTTGATGCAACAAGCAATGTTGCAGCGGGAAGACTGTTTGGGATACCTCTCCGTGG 659
Query 743 TACTCATTCCCATGCTTTTGTTAGCTCATTCATGAGCCTTGATGAAATTGTTGACAAAGT 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TACTCATTCCCATGCTTTTGTTAGCTCATTCATGAGCCTTGATGAAATTGTTGACAAAGT 719
Query 803 GCTTCGAAGTTCTGATGGGAAAAGCACTTGTAAGGATTTTATATGTTTGGTCCAAACTTG 862
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct 720 GCTTCGAAGTTCTGATGGGAAAAGCACTTGTGAGGATTTTATTTGTTTGGTCCAAACATG 779
Query 863 CCTAACAAAGATTCAGAATTCATCTTCATTACAAGGAATTTTTTCCGAGACAAATCAAAG 922
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCTAACTAGGATTCAGAATTCATCTTCATTACAAGGAATTTTTTCCGAGACAAATCAAAG 839
Query 923 CGAGCTTGCAGCGTTCATTTCATATGCACTGGCATTCCCAAACTCCTTTCTCGCTCTTGT 982
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 CGAGCTTGCAGCATTCATTTCATATGCACTGGCATTCCCGAACTCCTTTCTCGCTCTTGT 899
Query 983 AGACACTTATGATGTGATGAAGAGTGGTATTCCAAACTTCTGTGCTGTTGCTCTAGCACT 1042
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 900 AGACACTTACGATGTGATGAAGAGTGGAATTCCAAACTTCTGTGCTGTTGCTCTAGCACT 959
Query 1043 TAATGAATTGGGATACAAAGCAGTAGGCATTAGACTGGATTCAGGTGACTTAGCCTATCT 1102
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 960 TAATGAATTGGGATACAAAGCAGTGGGTATTAGACTGGATTCAGGTGATTTAGCCTATCT 1019
Query 1103 TTCTACTGAGGTCAGGAAATTCTTTTGTGCCATAGAGAGAGACCTCAAAGTTCCTGATTT 1162
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1020 GTCTACTGAGGTCAGGAAATTCTTTTGTGCCATAGAGAAAGACCTCAAAGTTCCCGATTT 1079
Query 1163 CGGGAAGATGATCGTCACTGCTAGTAACGATCTAAACGAAGAGACAGTCGATGCTCTAAA 1222
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CGGGAAGATGATCATCACTGCTAGTAACGATCTAAACGAAGAGACAGTCGATGCTCTAAA 1139
Query 1223 TAAACAGGGTCATGAAGTAGATGCATTTGGAATTGGAACCAACTTAGTGACTTGCTATGC 1282
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1140 TAAACAGGGTCATGAAGTAGATGCATTTGGAATTGGAACCAACTTAGTAACTTGCTATGC 1199
Query 1283 GCAAGCTGCGTTAGGTTGTGTTTTCAAACTTGTGGAAATAAACAATCAGCCTCGGATCAA 1342
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1200 ACAAGCTGCGTTAGGTTGTGTTTTCAAACTGGTGGAAATAAACAATCAGCCTCGGATCAA 1259
Query 1343 ACTTTCTGAAGATGTTACTAAGGTATCGATTCCATGTAAAAAGCGTACTTACAGATTGTT 1402
||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| ||
Sbjct 1260 ACTTTCTGAAGATGTAACTAAGGTATCGATACCATGTAAAAAGCGTATTTACAGATTATT 1319
Query 1403 CGGAAAAGAGGGTTACCCTCTTGTTGATATAATGACTGGAGAGAACGAACCACCTCCAAA 1462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1320 AGGAAAAGAGGGTTACCCTCTTGTTGATATAATGACTGGAGAGAACGAACCACCTCCGAA 1379
Query 1463 GGTCGGTGAAAGGTTACTTTGCCGTCATCCATTCAATGAATCAAAAAGGGCTTATGTGGT 1522
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1380 GGTCGGTGAAAGGTTACTTTGCCGTCATCCATTCAATGAATCGAAAAGGGCTTATGTGGT 1439
Query 1523 TCCACAACGCGTTGAAGAGCTTCTGAAATGTTATTGGCGTGGCAATGCAGATGAAGCTAG 1582
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GCCACAACGCGTTGAAGAGCTTCTGAAATGTTATTGGCGTGGCAATGCAGATGAAGCTAG 1499
Query 1583 GGAAGAGCTAGAGCCATTGAAAGAGCTAAGAAATCGTTGCATCAAACAGCTCGAAAATAT 1642
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1500 GGAAGAGCTAGAGCCATTGAAAGAGCTAAGAAACCGTTGCATCAAACAGCTCGAAAACAT 1559
Query 1643 GCGACCCGATCATATGAGAAGATTAAACCCTACTCCTTATAAGGT 1687
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GCGACCCGATCATATGAGAAGATTAAACCCTACTCCTTATAAGGT 1604
> Ahg481212 jgi|Araly1|481212|fgenesh2_kg.4__272__AT2G23420.1
Length=2038
Score = 1051 bits (569), Expect = 0.0
Identities = 910/1075 (85%), Gaps = 22/1075 (2%)
Strand=Plus/Plus
Query 700 GTAATGTTGCAGCGGGAAAACTGTTTGGGATACCCCTCCGTGGTACTCATTCCCATGCTT 759
||||||| ||||| |||||||| ||||||||||| |||||||| || || ||||||||||
Sbjct 694 GTAATGTAGCAGCTGGAAAACTTTTTGGGATACCTCTCCGTGGGACACACTCCCATGCTT 753
Query 760 TTGTTAGCTCATTCATGAGC-CTTGATGAAATTGTTGACAAAGTGCTTCGAAGTTCTGAT 818
||||||||||||||||||| | |||||| |||||||||||||| ||| | ||| |||||
Sbjct 754 ATGTTAGCTCATTCATGAGCAC-TGATGAGATTGTTGACAAAGTACTTTGCAGTGCTGAT 812
Query 819 GGGAAAAGCACTTGTAAGGATTTTAT-ATGT-TTGGTCCAAACTTGCCTAACAAAGATTC 876
||||||| ||| || |||||||| | | || | || || || || ||| ||||||||
Sbjct 813 GGGAAAACCACGTGCGAGGATTTTGTCA-GTCAT-GTTCAGACATGGTTAAAAAAGATTC 870
Query 877 AGAATTCATCTTCAT-TACA-AGGAATTTTTTCCGAGACAAATCAAAGCGAGCTTGCAGC 934
|| ||||| | || | || | || ||||| || |||||||||||||||||||| |||||
Sbjct 871 AGTATTCACCATC-TCTA-AGTGGCATTTTCTCTGAGACAAATCAAAGCGAGCTAGCAGC 928
Query 935 GTTCATTTCATATGCACTGGCATT-CCC-AAACTCCTTTCTCGCTCTTGTAGACACTTAT 992
|||| |||||||| |||||||| ||| ||||| ||||| || || ||||| || ||
Sbjct 929 TTTCACCTCATATGCGCTGGCATTCCCCAAAACT--TTTCTTGCCCTCGTAGATACATAC 986
Query 993 GATGTGATGAAGAGTGGTATTCCAAACTTCTGTGCTGTTGCTCTAGCACTTAATGAATTG 1052
||||||||||||||||| || || ||||||||||| |||||| ||||||| ||||| ||
Sbjct 987 GATGTGATGAAGAGTGGAATCCCTAACTTCTGTGCAGTTGCTTTAGCACTCAATGACTTT 1046
Query 1053 GGATACAAAGCAGTAGGCATTAGACTGGATTCAGGTGACTTAGCCTATCTTTCTACTGAG 1112
||||| |||||| |||| |||||||||||||||||||| ||||| ||||| |||| |||
Sbjct 1047 GGATATAAAGCATTAGGTATTAGACTGGATTCAGGTGATTTAGCTTATCTATCTAGAGAG 1106
Query 1113 GTC-AGGAAATTCTTTTGTGCCATAGAGAGAGACCTCAAAGTTCCTGATTTCGGGAAGAT 1171
| | ||||| ||||| || | |||||||||| || ||||| || | ||| ||||||||
Sbjct 1107 G-CTAGGAATTTCTTCTGCACGGTAGAGAGAGAACTTAAAGTGCCCGGTTTTGGGAAGAT 1165
Query 1172 GATCGTCACTGCTAGTAACGATCTAAACGAAGAGACAG-TCGATGCTCTAAATAAACAGG 1230
| ||||||| |||||||| ||||| || |||||||| | |||| ||| ||||||||||||
Sbjct 1166 GGTCGTCACCGCTAGTAATGATCTTAATGAAGAGAC-GATCGACGCTTTAAATAAACAGG 1224
Query 1231 GTCATGAAGTAGATGCATTTGGAATTGGAACCAACTTAGTGACTTGCTATGCGCAAGCTG 1290
| ||||| || ||||| ||||| || || ||| ||||||| ||||||||| ||||||| |
Sbjct 1225 GACATGAGGTGGATGCTTTTGGCATCGGGACCTACTTAGTCACTTGCTATTCGCAAGCGG 1284
Query 1291 CGTTAGGTTGTGTTTTCAAACTTGTGGAAATAAACAATCAGCCTCGGATCAAACTTTCTG 1350
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1285 CTTTAGGTTGTGTTTTCAAACTTGTGGAGATAAACAATCAGCCTCGGATTAAACTTTCTG 1344
Query 1351 AAGATGTTACTAAGGTATCGATTCCATGTAAAAAGCGTACTTACAGATTGTTCGGAAAAG 1410
|||||||||| |||||||| || || ||||||||||| | ||||||||| | ||| ||||
Sbjct 1345 AAGATGTTACAAAGGTATCAATACCGTGTAAAAAGCGAAGTTACAGATTATACGGGAAAG 1404
Query 1411 AGGGTTACCCTCTTGTTGATATAATGACTGGAGAGAACGAACCACCTCCAAAGGTCGGTG 1470
| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1405 AAGGTTACCCTCTGGTGGATATAATGACTGGAGAGAACGAACCACCTCCAAAGGTTGGTG 1464
Query 1471 AAAGGTTACTTTGCCGTCATCCATTCAATGAATCAAAAAGGGCTTATGTGGTTCCACAAC 1530
| | ||||| || ||||| |||||||||||||| ||||| || ||||| || |||||||
Sbjct 1465 AGCGTTTACTATGTCGTCACCCATTCAATGAATCCAAAAGAGCATATGTAGTGCCACAAC 1524
Query 1531 GCGTTGAAGAGCTTCTGAAATGTTATTGGCGTGGCAA-TGCAGATGAAGCTAGGGAAGAG 1589
| || |||||||| || ||||||||||||||||| || |||||||||||| || |||||
Sbjct 1525 GTGTCGAAGAGCTCCTCAAATGTTATTGGCGTGG-AAGTGCAGATGAAGCAAGAGAAGAA 1583
Query 1590 CTAGAGCCATTGAAAGAGCTAAGA-AATCGTTGCATCAAACAGCTCGAAAATATGCGACC 1648
|| ||| ||||||||| ||||| || ||||||||||||||||||||||| ||||||||
Sbjct 1584 TTACCGCCTTTGAAAGAGATAAGAGAA-CGTTGCATCAAACAGCTCGAAAACATGCGACC 1642
Query 1649 CGATCATATGAGAAGATTAAACCCTACTCCTTATAAGGTTAGTGTCAGCGCCAAGTTGTA 1708
|||||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||| ||||
Sbjct 1643 CGATCATATGAGGAGATTAAACCCAACTCCTTATAAGGTAAGTGTAAGCGCGAAGCTGTA 1702
Query 1709 TGACTTCATCCACTTCCTCTGGCTCAACGAAGCTCCTGTCGGTGAACTGCATTGA 1763
|| |||||||||||| | |||||||||||||| ||||| |||||| |||| |||
Sbjct 1703 CGATTTCATCCACTTCTTATGGCTCAACGAAGCACCTGTTGGTGAATTGCAATGA 1757
Score = 595 bits (322), Expect = 4e-169
Identities = 501/587 (85%), Gaps = 14/587 (2%)
Strand=Plus/Plus
Query 118 AATCGGGTCGGGTCATTAACGGACCCACTAACCCGATGGTCACACCTCTGCTCAACGATC 177
||| ||||| | ||||| ||||||| || || || |||||||||||| | ||||| ||||
Sbjct 82 AATTGGGTCAGATCATTGACGGACCAACCAATCCAATGGTCACACCTTTACTCAATGATC 141
Query 178 TTTACCAATTCACCATGGCTTATGCTTATTGGAAAGCTGGCAAACA-ATCTGAGCGATCT 236
| |||||||||||||||||||||||||||||||||||||||||||| | | || |||||
Sbjct 142 TCTACCAATTCACCATGGCTTATGCTTATTGGAAAGCTGGCAAACACAAC-GAACGATCC 200
Query 237 GTGTTT-GATCTGTATTTTCGTAAGAATCCTTTTGGTGGAGAATACACTATCTTTGCTGG 295
|| ||| |||||||||||||||||||| || |||||||| ||||| ||| | ||||||||
Sbjct 201 GT-TTTCGATCTGTATTTTCGTAAGAACCCATTTGGTGGTGAATATACTGTGTTTGCTGG 259
Query 296 TTTAGAAGAATGCATCAAATTTCTC-GCTAATTTCAATTTGACTGATGAAGAGATCGATT 354
|||||||| || || || || || || |||||||| |||| ||||||||| |||||||
Sbjct 260 ATTAGAAGAGTGTATTAAGTT-CTTAGCCAATTTCAAATTGAGTGATGAAGAAATCGATT 318
Query 355 TCGTTCGTGATTCGTTA-CCTGGATGTGAGGAAGCTTTCTGT-GATTATCTTCGAGGGCT 412
|||||||||||| ||| ||||||| |||||||||||| || ||||||||| |||||||
Sbjct 319 TCGTTCGTGATT-GTTTGCCTGGATCTGAGGAAGCTTT-TGGCGATTATCTTAGAGGGCT 376
Query 413 TGATTGTTCTGACATTGAAGTGTATGCCATTTCGGAAGGATCAGTTGTTTTTCCTAAAGT 472
|||||||||||| | ||||| || || ||| ||||||||||||||||||||||||||||
Sbjct 377 TGATTGTTCTGATGTCGAAGTTTACGCGATTCCGGAAGGATCAGTTGTTTTTCCTAAAGT 436
Query 473 TCCTTT-ACTCAGAATCGAAGGTCCTGTTGCTGTGGTGCAATTGTTGGAAACTCCATTCC 531
||| | | | ||| | ||||| ||||||| ||| || ||||||||||||||||||||||
Sbjct 437 ACCTCTCA-TGAGAGTTGAAGGACCTGTTGGTGTTGTTCAATTGTTGGAAACTCCATTCC 495
Query 532 TCAATCTCATCAATTACGCATCTTTGGTTGCTACAAATGCAGCAAGACATCGGTTTGTTG 591
||||||| |||||| ||||||||||| ||||| || ||||| || ||||| |||||||
Sbjct 496 TCAATCTTGTCAATTTTGCATCTTTGGTAGCTACTAACGCAGCTAGGCATCGCTTTGTTG 555
Query 592 CAGGAAAATCTAAGCTTCTGCTTGAGTTTGGTGCTAGAAGAGCTCAGGGACCCGATGGTG 651
| |||||||||||| ||| || |||||||||||| |||| ||||||||||| |||||||
Sbjct 556 CCGGAAAATCTAAGAGTCTACTCGAGTTTGGTGCTCGAAGGGCTCAGGGACCGGATGGTG 615
Query 652 CAATAAGCGCATC-AAAGTATTGCTACCTTGGAGGTTTTGATGCAAC 697
||||||||||||| ||| ||||| |||||||| |||||||| |||||
Sbjct 616 CAATAAGCGCATCGAAA-TATTGTTACCTTGGGGGTTTTGACGCAAC 661
> Ahg936051 jgi|Araly1|936051|scaffold_500242.1
Length=332
Score = 359 bits (194), Expect = 5e-98
Identities = 235/254 (93%), Gaps = 6/254 (2%)
Strand=Plus/Plus
Query 332 TTTGACTGATGAAGAGATCGATTTCGTTCGTGATTCGTTACCTGGATGTGAGGAAGCTTT 391
|||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct 14 TTTGACTGATGAAGAGATCGATTTCGTTCGCGATTCGTTGCCTCGATGTGAGGAAGCTTT 73
Query 392 CTGTGATTATCTTCGAGGGCTTGATTGTTCTGACATTGAAGTGTATGCCATTTCGGAAGG 451
|||||||||||||||| | ||||||| ||||||||||||||||||||||||||| |||||
Sbjct 74 CTGTGATTATCTTCGAAGACTTGATTATTCTGACATTGAAGTGTATGCCATTTCAGAAGG 133
Query 452 ATCAGTTGTTTTTCC-TA-AAGTTCCTTTACTCAGAATCGAAGGTCCTGTTGCTGTGGTG 509
||||||| ||||||| | ||||||||||||||||||| ||||||| ||||| ||| ||
Sbjct 134 ATCAGTT-TTTTTCCCTTGAAGTTCCTTTACTCAGAATTGAAGGTCATGTTG-TGT--TG 189
Query 510 CAATTGTTGGAAACTCCATTCCTCAATCTCATCAATTACGCATCTTTGGTTGCTACAAAT 569
|||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 190 CAATTGTTGGAAACTCCATTGCTTAATCTCATCAATTACGCATCTTTGATTGCTACAAAT 249
Query 570 GCAGCAAGACATCG 583
||||||||||||||
Sbjct 250 GCAGCAAGACATCG 263
> Ahg936036 jgi|Araly1|936036|scaffold_500227.1
Length=332
Score = 359 bits (194), Expect = 5e-98
Identities = 235/254 (93%), Gaps = 6/254 (2%)
Strand=Plus/Plus
Query 332 TTTGACTGATGAAGAGATCGATTTCGTTCGTGATTCGTTACCTGGATGTGAGGAAGCTTT 391
|||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct 14 TTTGACTGATGAAGAGATCGATTTCGTTCGCGATTCGTTGCCTCGATGTGAGGAAGCTTT 73
Query 392 CTGTGATTATCTTCGAGGGCTTGATTGTTCTGACATTGAAGTGTATGCCATTTCGGAAGG 451
|||||||||||||||| | ||||||| ||||||||||||||||||||||||||| |||||
Sbjct 74 CTGTGATTATCTTCGAAGACTTGATTATTCTGACATTGAAGTGTATGCCATTTCAGAAGG 133
Query 452 ATCAGTTGTTTTTCC-TA-AAGTTCCTTTACTCAGAATCGAAGGTCCTGTTGCTGTGGTG 509
||||||| ||||||| | ||||||||||||||||||| ||||||| ||||| ||| ||
Sbjct 134 ATCAGTT-TTTTTCCCTTGAAGTTCCTTTACTCAGAATTGAAGGTCATGTTG-TGT--TG 189
Query 510 CAATTGTTGGAAACTCCATTCCTCAATCTCATCAATTACGCATCTTTGGTTGCTACAAAT 569
|||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 190 CAATTGTTGGAAACTCCATTGCTTAATCTCATCAATTACGCATCTTTGATTGCTACAAAT 249
Query 570 GCAGCAAGACATCG 583
||||||||||||||
Sbjct 250 GCAGCAAGACATCG 263
> Ahg328051 jgi|Araly1|328051|fgenesh1_pm.C_scaffold_7000278
Length=2364
Score = 244 bits (132), Expect = 2e-63
Identities = 148/156 (95%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 1684 AGGTTAGTGTCAGCGCCAAGTTGTATGACTTCATCCACTTCCTCTGGCTCAACGAAGCTC 1743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2294 AGGTTAGTGTCAGCGCCAAGTTGTATGACTTCATCCACTTCCTCTGGCTCAACGAAGCTC 2235
Query 1744 CTGTCGGTGAACTGCATTGAGAATTTACAAATATGGGTTGTCTGGTTTGTTGAGTGTGTG 1803
|||| ||||||||||||||| ||| ||||||||||||||||||| || | || |||||||
Sbjct 2234 CTGTTGGTGAACTGCATTGACAATATACAAATATGGGTTGTCTGATTCGGTGTGTGTGTG 2175
Query 1804 TGTATAACCATAGTATCAGCTTTGCCACTGATCTCA 1839
||| ||||||||||||||||||||||||||||||||
Sbjct 2174 TGTGTAACCATAGTATCAGCTTTGCCACTGATCTCA 2139
Score = 152 bits (82), Expect = 1e-35
Identities = 101/110 (92%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 2024 AATCCAATAGCTGTAGAATCAGCATTACCCGCAGGAAGATTTCTTGGTTTCCGTGAAGTA 2083
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct 2138 AATCCAATAGCTGTAGAATCAGCATTACCCGCAGGAAGATTTTTTGAATTCCGTGAAGAA 2079
Query 2084 TCCT-TCCCTCCGGAGACTGGTGATGGAGACGACTTCGGAGGAGGAGCAT 2132
|| | ||||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 2078 TC-TGTCCCTCCAGCGACTGGTGATGGAGCCGACTTCGGAGGAGGAGCAT 2030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80218055970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5