BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36945.1
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328051 jgi|Araly1|328051|fgenesh1_pm.C_scaffold_7000278 1755 0.0
> Ahg328051 jgi|Araly1|328051|fgenesh1_pm.C_scaffold_7000278
Length=2364
Score = 1755 bits (950), Expect = 0.0
Identities = 1055/1107 (95%), Gaps = 2/1107 (0%)
Strand=Plus/Plus
Query 159 GGAGAAACATGTAGTTCGACCAGCGAATGCGACGCCGGATTGAGCTGTCAAAGTTGTCCG 218
||||||||||||||||||| |||| ||||||||||||||||||| || || ||||||||
Sbjct 1033 GGAGAAACATGTAGTTCGAGCAGCCAATGCGACGCCGGATTGAGTTGCCAGAGTTGTCCA 1092
Query 219 GCGAATGGAAATACCGGCTCTACTTGTACCCGGATCCAACCTCTTAACCCGACTTCAAAG 278
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 GCGAATGGAAATACCGGGTCTACTTGTACCCGGATCCAACCTCTTAACCCGACTTCAAAG 1152
Query 279 GTGAATGGTTTGCCGTTTAACAAGTACTCGTGGCTAACAACACACAATTCGTACGCAATC 338
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1153 GTGAATGGTTTGCCGTTTAACAAGTACTCGTGGCTAACCACACACAATTCGTACGCAATC 1212
Query 339 ACGGGGGCAAATTCGGCAACTGGTTCATTCCTTGTCTCTCCAAAGAATCAAGAAGACTCC 398
||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||
Sbjct 1213 ACGGGGGCAAATTCGGCAACTGGCTCATTCCTTATCTCTCCAACGAATCAAGAAGACTCC 1272
Query 399 ATCACCAATCAGCTTAAGAATGGTGTGAGAGGTATAATGCTAGATACATATGATTTTCAA 458
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1273 ATCACTAATCAGCTTAAGAATGGTGTGAGAGGGATAATGCTAGATACATATGATTTTCAA 1332
Query 459 AACGATATATGGTTGTGTCATTCCACTGGAGGGACTTGCTTTAACTTCACAGCCTTTCAA 518
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GACGATATATGGTTGTGTCATTCCACTGGAGGGACTTGCTTTAACTTCACAGCCTTTCAA 1392
Query 519 CCAGCTATCAATGCACTTAAAGAGATCAATGATTTTCTTGAATCAAACTTGTCTGAGATT 578
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 CCAGCTATCAATGCACTCAAAGAGATCAATGATTTTCTTGAATCAAACTTGTCTGAGATT 1452
Query 579 GTTACTATCATACTTGAAGATTATGTCAAATCTCAAATGGGATTGACTAATGTATTCAAT 638
||||||||||| |||||||||||||||||||||| ||||||||||||||| || ||||||
Sbjct 1453 GTTACTATCATTCTTGAAGATTATGTCAAATCTCCAATGGGATTGACTAAGGTGTTCAAT 1512
Query 639 GCATCTGGATTGAGTAAGTTCTTGTTACCAATCTCGAGAATGCCGAAAGACGGTACAGAC 698
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1513 GCATCTGGATTGAGTAAGTTCCAGTTACCAATTTCGAGAATGCCGAAAGACGGTACAGAC 1572
Query 699 TGGCCAACGGTTGATGATATGGTGAAGCAGAACCAAAGGCTTGTGGTTTTTACTTCCAAG 758
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1573 TGGCCAACGGTTGATGATATGGTGAAGCAGAACCAAAGGCTTGTTGTTTTTACTTCCAAC 1632
Query 759 AAGGATAAAGAAGCTTCTGAAGGTCTTGCTTACCAGTGGAATTACATGGTTGAAAATCAA 818
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1633 AAGGATAAAGAGGCTTCTGAAGGTTTTGCTTACCAGTGGAATTACATGGTTGAAAATCAG 1692
Query 819 TATGGTAATGATGGAATGAAGGATGGATCATGCTCGAGTCGATCTGAATCTTCTTCACTA 878
| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 1693 TTTGGCAATGATGGATTGAAGGATGGATCATGCTCGAGTCGATCTGAATCTTCTCCATTG 1752
Query 879 GATACCATGTCTCGGTCTTTGGTGTTTCAGAACTACTTTGAAACCAGTCCGAATTCAACG 938
||||||| ||||||||||||||| ||||||||||| |||||||||| |||||||||||||
Sbjct 1753 GATACCAAGTCTCGGTCTTTGGTTTTTCAGAACTATTTTGAAACCAATCCGAATTCAACG 1812
Query 939 CAAGCGTGTGCGGATAATTCCTCTCCGTTGATCGAAATGATGAGAACTTGCCATGAAGCA 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813 CAAGCGTGTGCGGATAATTCCTCTCCGTTGATCGAAATGATGAGAACTTGCCATGAAGCA 1872
Query 999 GCGGGTAAAAGGTGGCCTAACTTCATAGCTGTTGATTTTTATCAGAGGAGTGATAGTGGA 1058
||||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 1873 GCGGGTAAAAGATGGCCTAACTTCATCGCTGTTGATTTTTACCAGAGGAGTGACAGTGGA 1932
Query 1059 GGAGCTGCCGAAGCTGTAGATGAAGCAAACGGTCGTCTCACATGTGGTTGTGACAGCTTA 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1933 GGAGCTGCCGAAGCTGTAGATGAAGCAAACGGTCGTCTCACATGTGGTTGTGACAGCTTA 1992
Query 1119 GTCTATTGCAAGTCAAACGCACCTTTTGGCACTTGTGATGCTCCTCCTCCGAAGTCGTCT 1178
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1993 GTCTTTTGCAAGTCAAACGCACCTTTTGGCACATGTGATGCTCCTCCTCCGAAGTCGGCT 2052
Query 1179 CCATCACCAGTCTCCGGAGGGA-AGGATACTTCACGGAAACCAAGAAATCTTCCTGCGGG 1237
|||||||||||| | ||||||| || || |||||||||| ||| |||||||||||||||
Sbjct 2053 CCATCACCAGTCGCTGGAGGGACAG-ATTCTTCACGGAATTCAAAAAATCTTCCTGCGGG 2111
Query 1238 TAATGCTGATTCTACAGCTATTGGATT 1264
|||||||||||||||||||||||||||
Sbjct 2112 TAATGCTGATTCTACAGCTATTGGATT 2138
Score = 73.1 bits (39), Expect = 5e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1449 TGAGATCAGTGGCAAAGCTGATACTATGGTTATACACACACA 1490
|||||||||||||||||||||||||||||||| |||||||||
Sbjct 2139 TGAGATCAGTGGCAAAGCTGATACTATGGTTACACACACACA 2180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5