BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36960.1
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490904 jgi|Araly1|490904|fgenesh2_kg.7__337__AT4G36960.1 2278 0.0
> Ahg490904 jgi|Araly1|490904|fgenesh2_kg.7__337__AT4G36960.1
Length=1481
Score = 2278 bits (1233), Expect = 0.0
Identities = 1378/1445 (95%), Gaps = 22/1445 (2%)
Strand=Plus/Plus
Query 1 ATCTTCGCTTGCTTCCTCCTCAAAAGGTGAAAAATTagagcgagagagatagagagagaT 60
||||||||||||||||||||| |||| |||||||||||||| | || || |||||||
Sbjct 1 ATCTTCGCTTGCTTCCTCCTCTAAAGATGAAAAATTAGAGC---A-AG--AGCGAGAGAT 54
Query 61 TTCAAAACGAAAATCCAGAGAAAGGGTCTTG-CCAGTTTAGGGCATCCTTGTGGGTgaga 119
||||||||||||||||||| |||||||| || ||| ||||||| ||||||||||| ||||
Sbjct 55 TTCAAAACGAAAATCCAGAAAAAGGGTC-TGACCAATTTAGGGTATCCTTGTGGGAGAGA 113
Query 120 gagcgattgagagatttc-aaa-aggaggaaga-g--gaagatacgagtgtgagagagat 174
||| || ||| |||||| ||| |||||||||| | |||||||||||||| |||||||
Sbjct 114 GAGAGA--GAGGGATTTCAAAAGAGGAGGAAGAGGAAGAAGATACGAGTGT--GAGAGAT 169
Query 175 ttagagggagagaag-aaagagagaTTCTTTTTGAGTGTGTTAGGGTTTCATTTCCTCTG 233
||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct 170 TTAGAGGGAGAGAAGAAAAGAGAGATT-TTTTTGAGTGTATTAGGGTTTCAGTTCCTTTC 228
Query 234 CAGATCTACATTTATCTCTTCTCATGGAACGGAAGCTTGTGGTTTTGGGAATCCCGTGGG 293
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 CTGATCTACATTTATCTCTTCTCATGGAACGGAAGCTTGTGGTTTTGGGAATCCCGTGGG 288
Query 294 ATATTGATTCCGATGGGCTTAAGGATTACATGTCAAAATTTGGAGACTTGGAGGATTGTA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 ATATTGATTCCGATGGGCTTAAGGATTACATGTCAAAATTTGGAGACTTGGAGGATTGTA 348
Query 354 TTGTCATGAAGGATCGATCAACTGGAAGATCTCGTGGATTTGGATATGTCACTTTTGCTT 413
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 349 TTGTCATGAAGGATCGATCAACTGGGAGATCTCGTGGATTTGGATATGTCACTTTTGCTT 408
Query 414 CAGCTGAAGATGCAAAGAATGCTTTGAAAGGTGAACACTTTTTAGGGAACAGGATCTTGG 473
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 409 CAGCTGAAGATGCAAAGAATGCGTTGAAAGGTGAACACTTTTTAGGGAACAGGATCTTGG 468
Query 474 AAGTTAAAGTGGCTACACCAAAGGAAGAGATGAGACAGCCTGCaaaaaaaGTGACGAGGA 533
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 469 AAGTAAAAGTGGCTACACCAAAGGAAGAGATGAGACAGCCTGCAAAAAAGGTAACGAGGA 528
Query 534 TCTTCGTTGCTCGAATCCCTTCATCAGTCTCTGAATCAGATTTCCGAAGCCATTTTGAGA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TCTTCGTTGCTCGAATCCCTTCATCAGTCTCTGAATCAGATTTCCGAAGCCATTTTGAGA 588
Query 594 GGTATGGGGAAATAACAGACTTATACATGCCTAAGGACTACAACTCGAAGCAGCACCGAG 653
|||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 589 GGTATGGGGAAATAACCGACTTATACATGCCTAAGGACCACAACTCGAAGCAACACCGAG 648
Query 654 GAATAGGGTTTATCACATTCTCTAGTGCTGATTCAGTGGAGGATCTGATGGAGGACACTC 713
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GAATTGGATTTATCACATTCTCTAGTGCTGATTCAGTGGAGGATCTGATGGAGGACACTC 708
Query 714 ATGATCTGGGAGGTACAACAGTTGCTGTTGATCGGGCAACACCAAAAGAGGATGATCATC 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 ATGATCTGGGAGGTACAACAGTTGCTGTTGATCGGGCAACACCAAAAGAGGATGATCATC 768
Query 774 CGCCTAGGCCACCGCCAGTGGCTAGAATGTCGCGCCCACCCGTGGCTATTGCAGGTGG-- 831
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 769 CGCCTAGGCCACCGCCAGTGGCTAGAATGTCGCGCCCACCCGTGGCTGTTGCAGGTGGTG 828
Query 832 -ATTTGGAGCTCCAGGTGGTTATGGAGCTTATGATGCTTACATTTCTGCAGCTACAAGAT 890
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GATTTGGAGCTCCAGGTGGTTATGGAGCTTATGATGCTTACATTTCTGCAGCTACAAGAT 888
Query 891 ACGCAGCGCTTGGTGCCCCTACTTTGTATGATAATCCCGCCACGTTTTATGGAAGAGGGG 950
|||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| |
Sbjct 889 ACGCAGCGCTTGGTGCTCCTACTTTGTATGATAATCCAGCCATGTTTTATGGAAGAGGAG 948
Query 951 AACCAACCACAAGGGGAATAGGAAACAAGATCTTTGTTGGACGGCTTCCTCAAGAAGCAT 1010
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 949 AACCAAACACAAGGGGAATAGGAAACAAGATCTTTGTTGGAAGGCTTCCTCAAGAAGCAT 1008
Query 1011 CCGTTGATGATCTTCGCGATTATTTTGGGAGATTTGGCCATATTCAAGATGCTTATATTC 1070
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1009 CCGTTGATGATCTTCGCGAGTATTTTGGGAGATTTGGCCGTATTCAAGATGCTTATATTC 1068
Query 1071 CAAAGGACCCAAAGAGAAGTGGACATAGAGGTTTTGGATTTGTTACCTTTGCTGAAAATG 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 CAAAGGACCCAAAGAGAAGTGGACATAGAGGTTTTGGATTTGTTACCTTTGCTGAAAATG 1128
Query 1131 GTGTTGCAGATCGTGTAGCCCGAAGATCTCATGAAATCTGTGGACAAGAGGTAGCAATAG 1190
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1129 GTGTTGCAGATCGTGTAGCCCGAAGATCTCATGAAATCTGTGGACAAGAGGTTGCAATAG 1188
Query 1191 ATTCAGCAACGCCTCTTGATGAAGCTGGACCTAGCGCTGGCGCAAGTTCCATGTTAAGTT 1250
|||||||||| ||||||||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 1189 ATTCAGCAACACCTCTTGATGAAGCTGGACCTAGCGCTAGCGGAAGTTCCGTGTTAAGTT 1248
Query 1251 CTTCTCGTCCTGAATATTTTGGTGGCTATGGAGGTCCTATGCGCGCATTTGGTCGAATGT 1310
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1249 CTTCTCGTCCTGAATATTTTGGTGGCTATGGAGGTCCAATGCGCACATTTGGTCGAATGT 1308
Query 1311 ATGGAGGCATGAGCTTGGACGATTGGGGATATGGAATGCCAAACGCAAGACCATCAAGAC 1370
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 ATGGAGGCATGAGCTTGGACGATTGGGGATATGGAATGCCAAACGCAAGACCATCAAGAT 1368
Query 1371 CAGACCGGAGGTACCGGCCATACTAATGCAGCAGACCAACATTTCATTAGCTTTGGCTTT 1430
||||| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||
Sbjct 1369 CAGACTGGAGGTACCGGCCATACTAATGTACCAGACCAACATTCCATTAGCTTTGGCTTT 1428
Query 1431 GTCTT 1435
|||||
Sbjct 1429 GTCTT 1433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58887518770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5