BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36970.1
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944149 jgi|Araly1|944149|scaffold_700378.1 2023 0.0
> Ahg944149 jgi|Araly1|944149|scaffold_700378.1
Length=1345
Score = 2023 bits (1095), Expect = 0.0
Identities = 1270/1349 (94%), Gaps = 33/1349 (2%)
Strand=Plus/Plus
Query 209 GTTCTTTGAGAAACCAACATGAGAAAGACTTCTGTTTCATCTAATAGCTTTGGTGGGTTT 268
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 6 GTTCTTTGAGAAA--AACATGAGAAAGACTTCTGTTTCATCGAATAGCTTTGGTGGGTTT 63
Query 269 TTAAGTCCCGGAGCTCCGAGTTACGCTGACAACAAAGGTTGGAGCTCCGAGAGAGTTCCT 328
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 64 TTAAGTCCCGGAGCTCCGAGTTACGCCGATAACAAAGGTTGGAGCTCCGAGAGAGTTCCT 123
Query 329 CATCCTTCCTCCACTACTTCCTCCTCTGCAATTAACGGTGGTCGTCGTCACATCGGCTCT 388
|||||||| || || |||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 124 CATCCTTCGTCGACCACTTCCAGCTCAGCAATTAACGGTGGTCGTCGTCACATCGGCTCT 183
Query 389 TCTTCCGCTTTAACGACGCCGTTTTACAGCGGCAGAGCAATTCCTTCGAAATGGGAAGAT 448
|||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 184 GCTTCTGCTTTAACGACGCCGTTTTACAGCGGCAGAGCTATACCTTCGAAATGGGAAGAT 243
Query 449 GCTGAGCGGTGGATTTGTAGCCCTGTGTCGACTTACCCACAAGGTGTTTGTTTAAATTCC 508
||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||||
Sbjct 244 GCTGAACGGTGGATTTGTAGTCCTGTGTCGACATACCCACAAGGTGTTTGTAAAAATTCC 303
Query 509 TCAGT--G-----AG--TTCTGAACAGAGAAGGCAGAAATCTAAAAGTGGTCCGATTGTT 559
||||| | || ||||||||||||| | |||||||||||||||||||||||||||
Sbjct 304 TCAGTGAGTTCTCAGTTTTCTGAACAGAGACGTCAGAAATCTAAAAGTGGTCCGATTGTT 363
Query 560 CCTCCTACGTTGCCTCATCCGCATCCTACGTCTTCTTCGTCGGCGACTGGGTGTTATCAC 619
|||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 364 CCTCCTACGTTGCCTCATCCGCATCCGACGTCTTCTTCTTCGGCGGTTGGGTGTTATCAC 423
Query 620 TATTCTCCGAGGATGATGATGCGGTCTATGGATGCTCCTCCTAAGGGTTTAATGGTTGCT 679
|||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||| |||
Sbjct 424 TATTCTCCGAGGATGATGATTCGGTCCATGGAAGCTCCTCCCAAGGGTTTAATGGTCGCT 483
Query 680 GGTTCTCCGTTTTCTACTGGAGTTTTGGAGGCGGATAGGGTTTTTAGAGGAAGTGTC--- 736
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 484 GGTTCTCCGTTTTCTACTGGAGTTTTGGAGGCGGATAGGGTTTTCAGAGGAAGTGTCGGT 543
Query 737 -G-G-TGGT-G-G-TGGT---TGTGATGGCTATGGTCGTGGACCTGGCCATGGACATAGC 787
| | |||| | | |||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct 544 GGTGCTGGTGGTGCTGGTGGATGTGATGGCTATGGTCATGGACCTGGTCATGGACATAGC 603
Query 788 CGGAGCTGGGTTGATTTGATGAGTGAAGAAACTTCTTCACTTAGCTCCAAAACTGATAC- 846
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 604 CGGAGCTGGGTTGATTTGATGAGTGAAGAAACTTCATCACTTAGCTCCAAAACTGATACA 663
Query 847 -A-GAGGAGAAAGCAGAGATGACGACGGCGATGCAATCTCCGGTGGTATCAAGAAGAGAT 904
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 664 GAGGAGGAGAAAGCAGAGATGACGACGGCGATGCAATCTCCGGTGGTGTCAAGAAGAGAT 723
Query 905 ATGGCTACTCAGATGAGTCCAGAAGAGACGAGTCCTAATAACAATAACCAGTCTCCACCA 964
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 724 ATGGCTACTCAGATGAGTCCAGAAGAGATGAGTCCTAATAAC---AACCAGTCTCCACCA 780
Query 965 TTGGTTGTTTCTGTGATTGAGCCACCTCCTTGTAGAGGTGAAGTGAGAGAAGTGAAAATG 1024
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 TTGGTTGTTTCTGTGATTGAGCCTCCTCCTTGTAGAGGTGAAGTGAGAGAAGTGAAAATG 840
Query 1025 GATAAAGGAGCAAGAATGATTAAGCGTCCAAAGAGACGAGTCATGTCTTCTAGGATTATT 1084
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 841 GATAAAGGAGCAAGAATGATTAAGCGTCCAAAGAGACGAGTTATGTCTTCTAGGATTATT 900
Query 1085 AGGAGAGAGCAACCTGAGGTTGAAGACAATTCTGAAGCTTCTGCTTCTTCTTCTTCTTGG 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGGAGAGAGCAACCTGAGGTTGAAGACAATTCTGAAGCTTCTGCTTCTTCTTCTTCTTGG 960
Query 1145 GATATCTCAGAACCAGCCATGACTCTTTCTAAGTTGCAAAGAGAGGAAGCGAAGATTGCA 1204
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 961 GATATCTCGGAACCAGCCATGACTCTTTCTAAGTTGCAAAGAGAGGAAGCGAAGATAGCA 1020
Query 1205 GCTTGGGAAAATCTGCAGAAGGCGAAAGCAGAAGCCGCTATTAGAAAACTTGAGGTGAAG 1264
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1021 GCTTGGGAAAATCTGCAGAAGGCGAAAGCAGAAGCCGCCATCAGAAAACTCGAGGTGAAG 1080
Query 1265 CTGGAGAAGAAGAAATCAGCATCAATGGATAAGATCTTGAACAAGCTTCAAACAGCTAAG 1324
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1081 CTGGAGAAGAAGAAATCAGCATCAATGGATAAGATTTTGAACAAGCTTCAAACAGCTAAG 1140
Query 1325 ATCAAAGCACAAGAGATGAGGAGAAGTTCAGTATCCAGTGAACATGAACAACAACAAGGG 1384
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1141 ATCAAAGCACAAGAGATGAGGAGAAGTTCAGTATCCAGTGAACATG---AACAACAAGGG 1197
Query 1385 AATCATCAAATCTCCAGAAACTCGGTGAAGATCACGCATCTTGTTCGAAGACATACTTTC 1444
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 1198 AATCATCAAATCTCCAGAAACTCAGTGAAGATCACTCATCTTGTCCGAAGACATACTTTC 1257
Query 1445 ATGACTCCTTTCATGACTTGCTTTGCTCCTCGTGTTGATTGCAGAAAATCTTCTTCTGCT 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ATGACTCCTTTCATGACTTGCTTTGCTCCTCGTGTTGATTGCAGAAAATCTTCTTCTGCT 1317
Query 1505 CTCTGAAtttttttATTGAAAAGACAATT 1533
||||||||||||| |||||||||||||||
Sbjct 1318 CTCTGAATTTTTT-ATTGAAAAGACAATT 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59649323670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5