BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36980.4
Length=1984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490906 jgi|Araly1|490906|fgenesh2_kg.7__339__AT4G36980.2 2318 0.0
> Ahg490906 jgi|Araly1|490906|fgenesh2_kg.7__339__AT4G36980.2
Length=2065
Score = 2318 bits (1255), Expect = 0.0
Identities = 1450/1543 (94%), Gaps = 17/1543 (1%)
Strand=Plus/Plus
Query 12 AGCTAATTAGGGTTTCTTCTGAGCTTAGAGAGC-A--A---G-G-ACAAGATGTGGCACG 63
||||||||||||||||||||||||| ||||| | | | | | |||||||||||||||
Sbjct 1 AGCTAATTAGGGTTTCTTCTGAGCTAAGAGACCAAGGAGGTGAGAACAAGATGTGGCACG 60
Query 64 AAGCGAGAAGATCGGAGAAGAAGGTTCACGATATGATGGACGCTGCTCGGAAAAGAGCAC 123
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 AAGCGAGAAGATCGGAGAAGAAGGTGCACGATATGATGGACGCTGCTCGGAAAAGAGCAC 120
Query 124 AGCGGCGAGCTATTTACTTAGCTAAACGCCGTGGAGATCCTATTCAGTCGATTCAAGCCG 183
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCGGCGAGCTATTTACTTGGCTAAACGCCGTGGAGATCCTATTCAGTCGATTCAAGCCG 180
Query 184 TTGGTTCCCGCTACCGAGTATTCCGTGATGATGGTCTTTACCAAGCCACCGAAGATCAAC 243
||||||| ||||||||| | ||||| |||||||||||||||||||||||||| |||||||
Sbjct 181 TTGGTTCTCGCTACCGAATCTTCCGCGATGATGGTCTTTACCAAGCCACCGAGGATCAAC 240
Query 244 AGGGCTTGATTCCTTGGAATGGGAAGCAAGATGTTATGATTGATAGATTTGATGGTCGTG 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGGGCTTGATTCCTTGGAATGGGAAGCAAGATGTTATGATTGATAGATTTGATGGTCGTG 300
Query 304 CTCTTCTGGATTTTGTGCGTGAGGCTGGTTCGAGAAGTGTACGTCCACATAAGAAAACGG 363
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 CTCTTCTGGATTTTGTGCGTGAGGCTGGTTCGAGAAACATACGTCCACATAAGAAAACGG 360
Query 364 AAGAGGAAGAAGAACTTGAAGAGTTTGTTAATTTTGAGCGTTATCGGGATTTGATTAAGC 423
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGAGGAGGAAGAACTTGATGAGTTTGTTAATTTTGAGCGTTATCGGGATTTGATTAAGC 420
Query 424 ATCGGCGTAGAGGATTTTCTGATGAGGAGGGTTTGCAACATGTCCATCAAGAGCTCGAGG 483
|||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 421 ATCGCCGTAGAGGATTTTCTGATGAGGAGGGTTTGCTTCATGTCCATCAAGAGCACGAGG 480
Query 484 CCAAACTTGCTGCTCCCTTCCTTGGGACAAGAACACAACCAGCTCAACCACCTGCAAACA 543
||||||||||||||||||||| ||| | ||| |||| |||||||||||||||||||||
Sbjct 481 CCAAACTTGCTGCTCCCTTCCCAGGGGCTAGATCACAGGCAGCTCAACCACCTGCAAACA 540
Query 544 AAGGCACATATTCGCAGGTTGGATTTTCTTATGCTGGAAATGGCAAAGATAATTCATTGG 603
|||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 541 AAGGCACATATTCGCAGGTTGGATTTTCTTATACTGGAAACGGAAAAGATAATTCATTGG 600
Query 604 ATGCGGACGAAGATGATGTTGATGACGACGAGGATGATGAGGATGAAGAGGAAGAATTTG 663
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGCAGACGAAGATGATGTTGATGACGACGAGGATGATGAGGATGAAGAGGAAGAATTTG 660
Query 664 ACAGTAATGACAGTGATGATGAAGGAATGGAAACAATTGCGAAACAGTTTGGTATTAAGC 723
||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 661 ACAGTAATGACAGCGATGATGAAGGAATGGAAACAATTGCAAAACAGTTTGGCGTTAAGC 720
Query 724 GATATGGGTGGCTTGTTTATATGGACAAGAAGGCAAAAGAGGAAGAGAAAAGGCAAAAGG 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 721 GATATGGGTGGCTTGTTTATATGGACAAGAAGGCAAAAGAGGAAGAGAAAAGGCAGAAGG 780
Query 784 AACTCATCAAAGGCGATCCTTCAATTAAGAAACTAAGTCGCAAGGAGAGAAGAAAAGTTT 843
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 781 AACTCATCAAAGGCGATCCTTCAATTAAGAAACTAAGTCGCAAGGAAAGAAGAAAAGTTT 840
Query 844 CTAGGATAGAGAGGGATAGAGAAAGGGAAACTTCAAGGAGTGTCGGAAGGCAAATAATTC 903
||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 841 CTAGGATAGAGAGGGATAGGGAAAGAGAAACTTCAAGGAGTGTTGGAAGGCAAATAATTC 900
Query 904 ATCATGATCCATACAGGGAGTCTCGAAGGAGTCCTACTTATGAGGCCTATCCGCGTTCAA 963
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 901 ATCATGATCCTTACAGGGAGTCCCGAAGGAGTCCTACTTATGAGGCTTATCCGCGTTCAA 960
Query 964 GAAGATCAAGATCCAGATCCCGCTCATATTCTCCATCATACTCAAGGAGAAATGGGCGTG 1023
|||||||||||||||||||||| || |||||||||||||||||| || | ||||||||||
Sbjct 961 GAAGATCAAGATCCAGATCCCGGTCGTATTCTCCATCATACTCACGGCGGAATGGGCGTG 1020
Query 1024 GAGACCATTCTGATGAAATCAGCAAACCAAAAATCGAATATATTACGGAATTTGGAGGAG 1083
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1021 GAGACCATTCTGATGAAATCAGCAAACCAAAAATCGAATATATTACAGAATTTGGAGGAG 1080
Query 1084 GCTCTGGAGATATGAGAAGTCCAAAGTTTGAAGGATATTCCCCACCGCGTTCACCACCAT 1143
||||||||||| || |||||| ||||| ||||||||||||||||||| |||||||||||
Sbjct 1081 GCTCTGGAGATGTGGGAAGTCTGAAGTTCGAAGGATATTCCCCACCGCATTCACCACCAT 1140
Query 1144 CTCAGTCTGATCTATTAAGCCGACCATCGCCAGGCCGTATTCTTGAGGCGCTGCATGTTG 1203
|||||||||| ||||| |||||||||||||| |||| ||||||||||||| |||||||||
Sbjct 1141 CTCAGTCTGACCTATTGAGCCGACCATCGCCGGGCCATATTCTTGAGGCGTTGCATGTTG 1200
Query 1204 ATCCTGCATCTGATATATCCCTTGAGAAAGACAA-AGTTGCCAAACCAGCAAAATCGACA 1262
|||||||||||| | |||| |||||||||||||| | ||| ||| ||| ||| | |||
Sbjct 1201 ATCCTGCATCTGGTGTATCTCTTGAGAAAGACAAGA-TTGTTAAAACAGTTAAACCAACA 1259
Query 1263 GTGAGTACTTCCACAGCACTAGCGAAGCTTTCAAAAGTAGCAGGTACCTCCTCTTCGAAG 1322
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1260 GTGAGTACTTCCACGGCACTAGCGAAGCTTTCAAAAG---CAGGTACCTCCTCTTCGAAG 1316
Query 1323 CAGTCACAAGCAGAGAAGAAAGAAACTCCCCAAGAACGACTGAAGAGAATCATGAACAAA 1382
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CAGACACAAGCAGAGAAGAAAGAAACTCCCCAAGAACGACTGAAGAGAATCATGAACAAA 1376
Query 1383 CAGCTAACGAAGCAAATTAAGAAAGACTCTGCAACAGAAACGGCTAAGAAACGAGAACAG 1442
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1377 CAGCTAACGAAGCAAATTAAGAAAGACTCTGCAACAGAGACTGCTAAGAAACGAGAACAG 1436
Query 1443 GAGCGACAAAGGCTGGAGAAACTAGCGGAAACAAGCCGGTTAAGTCGGAA-TAGGCAGCG 1501
||||| ||||||||||||||| | ||||||||||||||||||||||| || |||||| ||
Sbjct 1437 GAGCGGCAAAGGCTGGAGAAAATTGCGGAAACAAGCCGGTTAAGTCG-AAGTAGGCATCG 1495
Query 1502 CAGCCGTAGTAGGAGT-ATTAGTCGATCACCACCACCGAGGTT 1543
|||||||||||||||| || |||||||||||||||||||||||
Sbjct 1496 CAGCCGTAGTAGGAGTTAT-AGTCGATCACCACCACCGAGGTT 1537
Score = 315 bits (170), Expect = 1e-84
Identities = 257/297 (87%), Gaps = 14/297 (5%)
Strand=Plus/Plus
Query 1544 AAGACACAGGCGAAGCAGAAGCAGAAGCGGAAGCAGGAGCAGGAGATCACGCAGGCACAG 1603
|||||||||||||||||||||||||||| ||||||| ||||||||||| || ||||||||
Sbjct 1713 AAGACACAGGCGAAGCAGAAGCAGAAGCCGAAGCAGAAGCAGGAGATCGCGTAGGCACAG 1772
Query 1604 TTCAAGGTCACGGTCTAGGTCCCCATCTAGGTCGTTATCACGCTCTCCGAAACGCTCACG 1663
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1773 TTCAAGGTCACGGTCTAGGTCCCCATCTAGGTCGTTATCACGGTCTCCCAAACGCTCACG 1832
Query 1664 CAGACGCTCTCCATCTTATTCGAGGTCTCCCAGGCGAAGAAGCAGCAGGTCAAGGCACTG 1723
|| |||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||||
Sbjct 1833 CAAACGCTCTCCATCTTATTCAAGGTCTCCCAGGCAAAGAAGAAGCAGGACAAGGCACTG 1892
Query 1724 AAGAGAGGAAACTCTAATTGTTGCGGCAGCtt-t-tttt-G-TTGCCTCTGTTCAttttt 1779
||| ||||| ||||| |||||||| | || | |||| | || || ||| | |||||
Sbjct 1893 AAGGGAGGACACTCTTATTGTTGCCTCTTTTTATGTTTTTGCTT-CCACTGGT--TTTTT 1949
Query 1780 tttttttttCTGTGTGTTTT-CGT-ATCCT-TACGATTCAGTGGTAAAATATGGTTT 1833
||||||||| |||||||||| | | || | || || |||||||||| | ||||||
Sbjct 1950 TTTTTTTTT-TGTGTGTTTTACTTGATA-TATA--ATCCAGTGGTAAATTGTGGTTT 2002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74580699710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5