BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37000.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353127 jgi|Araly1|353127|fgenesh1_pg.C_scaffold_7000300 1415 0.0
Ahg478259 jgi|Araly1|478259|fgenesh2_kg.3__960__AT3G09400.1 58.4 1e-07
> Ahg353127 jgi|Araly1|353127|fgenesh1_pg.C_scaffold_7000300
Length=975
Score = 1415 bits (766), Expect = 0.0
Identities = 908/975 (93%), Gaps = 15/975 (2%)
Strand=Plus/Plus
Query 16 ATGGCGATGATATTTTGCAACACTCTCTACTCTTCTTCTTCTCCATCATATCTCTCGCCG 75
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGCGATGATATTTTGCAACACTCTCTACTCTTCTTCTTCTCCATCATCTCTCTCGCCG 60
Query 76 ------TTAAC-T----T----CAAAACCGTCGCGATTCTCAAAGAATCTCAGACCTCGA 120
||||| | | ||||||||||||||||| |||||||||||| | |||||
Sbjct 61 TTAACATTAACTTCAACTCCAACAAAACCGTCGCGATTCCCAAAGAATCTCAAAGCTCGA 120
Query 121 GCTCAATTCCAGTCCATGGAAGACCACGACGATCACCTCCGCCGAAAATTTATGGAGTTC 180
||||||||||||||||||||||| |||||||| || |||||||| ||||| |||||||||
Sbjct 121 GCTCAATTCCAGTCCATGGAAGATCACGACGACCATCTCCGCCGCAAATTCATGGAGTTC 180
Query 181 CCGTATGTGTCACCCACGCGGAAGCAGCTCATGGTTGATCTCATGTCGACGGTGGAGAAT 240
||||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 181 CCGTACGTGTCACCCATGCGCAAGCAGCTTATGGTTGATCTCATGTCGACGGTGGAGAAT 240
Query 241 CGCCTCCAATCACAACTCCTTCCCTGTAACCTCCCTCCAGATGTACGAAACTTCAATAAC 300
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 241 CGCCTCCAATCGCAACTCCTTCCCTGTAACCTCCCGCCAGATGTACGAAACTTTAAGAAC 300
Query 301 CCTAACGGTTCCGCCGAAGCATCTCTTCATATCAGATCCGGCGACAAATCTTCTCCGATT 360
||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||||||
Sbjct 301 CCTAACGGTTCCGCCGAAGCATCTCTTCACATCAGATCCGGCCAGAAATCATCTCCGATT 360
Query 361 GATTTTGTTATAGGAAGTTGGATACATTGCAAGATCCCAACAGGAGTATCTTTGAATATA 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 GATTTTGTTATAGGAAGTTGGATACATTGCAAGATCCCAACAGGAGTATCTCTGAATATA 420
Query 421 ACAAGCATCTCTGGATTCTTAAACTCATCAACAAAAGCTCCAAACTTTGTGGTCGAACTA 480
||||| ||||||| |||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 421 ACAAGTATCTCTGCATTCTTAAACTCGTCAACAAAAGCTCCAAACTTTGTTGTCGAACTA 480
Query 481 ATACAGAGCAGTTCCAAGTCGCTTGTGCTAATCCTTGACCTCCCACATCGTAAAGATCTT 540
|||||||||||| || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 ATACAGAGCAGTCCCTCGTCGCTCGTGCTAATCCTTGACCTCCCACATCGTAAAGATCTC 540
Query 541 GTTCTTAACCCGGATTATCTCAAGGAGTATTACCAAGACACTGCTCTTGATTCTCATCGA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTCTTAACCCGGATTATCTCAAGGAGTATTACCAAGACACTGCTCTTGATTCTCATCGC 600
Query 601 CAATCTCTCCTTAAGCTACCTGAAGTTAACCCTTATGTGTCTCCTTCTCTCTTTGTCCGT 660
|||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 601 CAATCTCTCCTTAAGCTACCTGAAGTCAAACCTTATGTGTCTCCTTCTCTATTTGTTCGC 660
Query 661 TCTGCTTTCTCTCCTACTGCTTCGATGCTTAAGATTGATGCGGAGGAAGAGGATAAGTTG 720
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 TCTGCTTTCTCTCCTACTGCTTCGATGCTTAAGATCGATGCGGAGGAAGAGGATAAGTTG 720
Query 721 GAGGAGATATTGAGAGATCATGTTAGTCCAGCTGCTAAGGAGGTTCTCGAGGTTTGGTTG 780
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGGAGATCTTGAGAGATCATGTTAGTCCAGCTGCTAAGGAGGTTCTCGAGGTTTGGTTG 780
Query 781 GAGCGGTGTGTgaaggaagaagaagagaagattgtggttggggaagaagagagaatggag 840
|||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct 781 GAGCGGTGTGCCAAGGAAGAAGAGGAGAAGAGAGTGATTGGGGAAGAAGAGAGAATGGAG 840
Query 841 ttggagagaagagataaaagctttagaaggaagagcatagaggaCGATTTGGATTTGCAG 900
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 TTGGAGAGAAGAGATAAAAGCTTTAGAAGGAAGAGCATAGAGGAAGATTTGGATTTGCAG 900
Query 901 TTTCCGAGAATGTTTGGTGAAGAAGTTTCCTCCCGTGTTGTACACGCTATTAAAGAAGCT 960
||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 901 TTTCCGAGAATGTTTGGGGAAGATGTTTCCTCACGTGTTGTACACGCTATCAAAGAAGCA 960
Query 961 TTCGGTGTTCTCTAG 975
||||||||||| |||
Sbjct 961 TTCGGTGTTCTTTAG 975
> Ahg478259 jgi|Araly1|478259|fgenesh2_kg.3__960__AT3G09400.1
Length=1968
Score = 58.4 bits (31), Expect = 1e-07
Identities = 36/38 (95%), Gaps = 1/38 (3%)
Strand=Plus/Minus
Query 1028 CTTTCATCAATGTCACAAGAACGCAAGATGACCATCAA 1065
||||||||||||||||||||||||||||| |||||||
Sbjct 1270 CTTTCATCAATGTCACAAGAACGCAAGATC-CCATCAA 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5