BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37010.2
Length=757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490911 jgi|Araly1|490911|fgenesh2_kg.7__344__AT4G37010.1 856 0.0
> Ahg490911 jgi|Araly1|490911|fgenesh2_kg.7__344__AT4G37010.1
Length=667
Score = 856 bits (463), Expect = 0.0
Identities = 531/563 (94%), Gaps = 8/563 (1%)
Strand=Plus/Plus
Query 9 GGCGAATTACATG-TCGGAAGCAGCACAGCTCAGAAGAGGTCTAAAGCCTAAAGGGAAGA 67
||||||||||||| || |||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 49 GGCGAATTACATGTTC-GAAGCAGCACAGCTTAGAAGAGGTCTAAAACCTAAAGGAAAGA 107
Query 68 CTTATGGGTTGACCAATCAGAAGAGACGAGAGATCAGAGAGATCTTTGATCTTTTCGACA 127
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 108 CTTATGGGTTGACCAATCAGAAGAGACGAGAGATCAGAGAGATATTTGATCTTTTCGACA 167
Query 128 TAGACGGTTCAGGTAGCATCGATGCTAGCGAGCTCAACGTTGCTATGAGGTCTCTTGGAT 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TAGACGGTTCAGGTAGCATCGATGCTAGCGAGCTCAACGTTGCTATGAGGTCTCTTGGAT 227
Query 188 TTGAGATGAATAATCAGCAAATAAACGAATTGATGGCAGAAGTAGATAAAAACCAAAGTG 247
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TTGAGATGAATAATGAGCAAATAAACGAATTGATGGCAGAAGTAGATAAAAACCAAAGTG 287
Query 248 GAGCCATAGATTTCGACGAATTTGTGCATATGATGACAACCAAATTCGGAGAACGAGACT 307
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 288 GAGCCATAGATTTCGAGGAATTTGTGCATATGATGACAACTAAATTCGGAGAACGAGAGT 347
Query 308 CCATAGACGAATTGTCTAAGGCGTTTAAGATCATTGACCACGACAATAATGGGAAGATTT 367
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 348 CCATAGATGAATTGTCTAAGGCGTTTAAGATCATTGACCATGACAATAATGGGAAGATTT 407
Query 368 CACCTCGTGATATAAAGATGATTGCTAAAGAATTGGGAGAAAATTTCACAGATAATGATA 427
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 CACCTCGTGATATAAAGGTGATTGCTAAAGAATTGGGAGAAAATTTCACAGATAATGATA 467
Query 428 TAGAAGAAATGATCGAAGAAGCAGACCGTGACAAAGATGGAGAAGTTAACTTGGAGGAGT 487
| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 468 TTGAAGAAATGATCGAAGAAGCAGACCGTGACGAAGATGGAGAAGTTAACTTCGAGGAGT 527
Query 488 TCATGAAGATGATGAAGAGAACCTCTTACGGCTAAGTATAAATCAATTA---GTAATGGT 544
||||||||||||||||||| || |||||||||||| | | ||| || | || |||||
Sbjct 528 TCATGAAGATGATGAAGAGGACTTCTTACGGCTAAATGTTAATTAAAAAAAAGTTATGGT 587
Query 545 TGTGAATAATATTTGTTAATCAC 567
|||| ||| | || |||||||||
Sbjct 588 TGTGGATA-T-TT-GTTAATCAC 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27905975244
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5