BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37020.2
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944155 jgi|Araly1|944155|scaffold_700384.1 1013 0.0
> Ahg944155 jgi|Araly1|944155|scaffold_700384.1
Length=679
Score = 1013 bits (548), Expect = 0.0
Identities = 612/643 (95%), Gaps = 3/643 (0%)
Strand=Plus/Plus
Query 48 CAATTTTGAGAAAGACGGATTATGGACTCCATGGAAGCTCCATCT-CTACCATTTCAATC 106
||| ||||||||| |||| ||||||||||||||||||||||||| || || ||||||||
Sbjct 1 CAA-TTTGAGAAACTCGGACTATGGACTCCATGGAAGCTCCATCTCCT-CCTTTTCAATC 58
Query 107 TCCCTCTCGTTCCAGTCAACAATTGCATTTCTACCTCGCCGTGGATCGTCCCCAATTCAA 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TCCCTCTCGTTCCAGTCAACAATTGCATTTCTACCTCGCCGTGGATCGTCCCCAATTCAA 118
Query 167 AATGGAGACTGTAGTGGAATTATTAGGCGTTCTAGGTCGTCGTCCATGGCTTCCGATTGT 226
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 119 AATGGAGACTGTAGTGGAATTATTGGGCGTTCTAGGTCGTCGTCCATGGCTTCCGATTGT 178
Query 227 AGTCTGTTGCAGCTCTCGTGACGAACTTGACGCCGTCTGTTCTTCCTTATCCACTCTTCC 286
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 179 AGTCTGTTGCAGCTCTCGTGATGAACTCGACGCCGTCTGTTCTTCCTTATCCACTCTTCC 238
Query 287 TTACATTTCCTTAGCCGCTTTGTACAGCGATCTAGCAGATAGAGAACGAGCTATGGTTAT 346
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 239 TTACATTTCATTAGCCGCTTTGTACAGCGATCTAGCAGATAGAGAACGAACTATGGTTAT 298
Query 347 AGAGAAATTCAGGCAAGCAACAATCAACTGGAACCAGCAACTTAACTCTGTGGTAGAAGA 406
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 299 AGAGAAATTCAAGCAAGCAACAATCAACTGGAACCAGCAACTTAACTCTGTGGTAGAGGA 358
Query 407 AGGTTTGGAAGAGAGTGAAAACGGAAAAGAAGAAAAGACATCTCATTTGGTAGTTGTGAC 466
|| ||||||||||||||||| | ||||||||||||| | |||||||||||||||||||||
Sbjct 359 AGTTTTGGAAGAGAGTGAAACCAGAAAAGAAGAAAATAAATCTCATTTGGTAGTTGTGAC 418
Query 467 CGATGTTTGCCTTCCGTTACTCTCATCAGGAGAATCTTCTCTATCCGCACGCGTTCTCAT 526
||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 419 CGATGTTTGTCTTCCGTTACTCTCATCCGGAGAATCTTCTCTCTCCGCCCGCGTTCTCAT 478
Query 527 AAACTACGAGCTTCCTACAAAGAAGGAAACATATACAAGGCGTATAACAACTTGCTTAGC 586
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CAACTATGAGCTTCCTACAAAGAAGGAAACATATACAAGGCGTATAACAACTTGCTTAGC 538
Query 587 TTCAGGTGGAATAGTCATAAACATGGTTGTTGGAGGTGAAGTAACGACTCTCAAAAGCCT 646
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 TTCAGGTGGAATTGTCATAAACATGGTTGTTGGAGGTGAAGTCGCGACTCTCAAAAGCCT 598
Query 647 CGAAGAAAGCAGTGGCATACTCATCGCTGAGATGCCAATCAAT 689
|||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 599 CGAAGAAAGCAGCGGCATAATCATCGCAGAGATGCCAATCAAT 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38542269087
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5