BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37030.1
Length=2063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944156 jgi|Araly1|944156|scaffold_700385.1 2676 0.0
> Ahg944156 jgi|Araly1|944156|scaffold_700385.1
Length=1750
Score = 2676 bits (1449), Expect = 0.0
Identities = 1649/1745 (94%), Gaps = 16/1745 (1%)
Strand=Plus/Plus
Query 203 GCTTTCCTTTCCGGAAGACTATGGCTGTCGTCGTCACTAACCTAGGAAGCTGTCTGAAGA 262
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 GCTTTCCTTTCCAGAAGACTATGGCTGTCGTCGTAACTAACCTAGGAAGCTGTCTGAAGA 60
Query 263 TTTCTTATGTCATCTTTGCCTTTTGTTCTGCTTTCTTTCTCGGTGCTATCAAAGGTTTGA 322
|| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TTACTTATGTCATATTTGCCTTTTGTTCTGCTTTCTTTCTCGGTGCTCTCAAAGGTTTGA 120
Query 323 TCGTAGGTCCAATTGCTGGAT-TAACATTAATAGTTGGGAATGTTGGAGTGATTCTTTGT 381
||||||||||||||||||| | |||||||||||| || |||||||||||||||||| ||
Sbjct 121 TCGTAGGTCCAATTGCTGG-TCTAACATTAATAGCAGGAAATGTTGGAGTGATTCTTGGT 179
Query 382 TTGTTCCCTGCACATGTTACTTGGACTATTTACGCTGTTGCAA-AGACAAATAGATTTGA 440
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 180 TTGTTCCCTGCACATGTTACTTGGACTATTTACGCTGTTGCAACA-ACAAATAGATTTGA 238
Query 441 CATTCCTCTGAAGGTAGCAATCTTAGTGGCACTTCCTGCATTGTTTGGGATATGGTTAGG 500
|||||||||||| |||||||||||||||||||||| || || |||||||||||||||||
Sbjct 239 CATTCCTCTGAAACTAGCAATCTTAGTGGCACTTCCCGCTTTATTTGGGATATGGTTAGG 298
Query 501 TCTAAGTCTAGCAATTAGTGTTCTTGTTGGTGTTGGCTATGGATTCTTCACTCCTTGGAT 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCTAAGTCTAGCAATTAGTGTTCTTGTTGGTGTTGGCTATGGATTCTTCACTCCTTGGAT 358
Query 561 CTCTGCTTTTGAAGCCTTTAGACAAGACACTGAATCCAACAAGTTCTTCCACTGTCTTGT 620
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTCTGCTTTTGAAGCATTTAGACAAGACACTGAATCCAACAAGTTCTTCCACTGTCTTGT 418
Query 621 GGATGGAACTTGGGGAACCATCAAAGGGAGTTGCATTGTGGTTACTGATTTTGCAGATTT 680
||||||||||||||||||||||||||| ||||| | ||||||||| ||||| ||||||||
Sbjct 419 GGATGGAACTTGGGGAACCATCAAAGGAAGTTGTACTGTGGTTACCGATTTCGCAGATTT 478
Query 681 TTGTTACCATTCTTATCCACTTTACTTAAAGGAGTTACGCGAATCCCCGGTTTCAGATGA 740
|||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 479 TTGTTACCATTCGTATCCACTTTACTTAAAGGAGTTGCGCGAATCCCCGGCCCCAGATGA 538
Query 741 GCTTCAAACTCTTAGGTTGATTCATGTTCCAGGATGCATCATTGTTGGGATTCTAGGATT 800
|||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 GCTTGAAACTCTTAGGTTAATTCATGTTCCAGGATGCATCATTGTTGGGATTATAGGATT 598
Query 801 AGTCATTGATATCCCTCTTTTCACTGCAATCGCGGTTA-TTAAAAGCCCTTACCTTCTTC 859
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 599 AGTCATTGATATCCCTCTTTTCACTGCAATCGCGG-TATTTAAAAGCCCTTACCTTCTGC 657
Query 860 TCAAAGGCTGGTACCGACTAGCTCAAGACGCGATTAATCGAGAAGGACCATTTCTTGAAA 919
||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||
Sbjct 658 TCAAAGGCTGGTACCGACTAGCTCAAGACGCTATTAACCGGGAAGGACCATTCCTTGAAA 717
Query 920 TAGCTTGTATACCAGTTGCTGGTTTGACAGTACTGTTATGGCCTA-TAGTTGTCATTGGT 978
||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 718 TAGCTTGTATACCAGTTGCTGGTTTGACAATACTGTTATGGCCTATTA-TTGTCATTGGT 776
Query 979 TTTATTTTGGTGACCATCTTCTCCAGCATCTTTGTAGGACTATATGGAGCAGTTGTTGTA 1038
||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 777 TTTGTTTTGATGACCATCTTCTCCAGCATCTTTGTTGGATTATATGGAGCAGTTGTTGTA 836
Query 1039 TTTCAGGAAAGGTCATTCAGAAGAGGAGTCTCTTATGTGATTGCAGTAGTTGGAGAATTT 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TTTCAGGAAAGGTCATTCAGAAGAGGAGTCTCTTATGTGATTGCAGTAGTTGGAGAATTT 896
Query 1099 GATGAGTACACAAATGATTGGCTTTACCTTAGAGAAGGAACCATCTTCCCAAAGCCAAGA 1158
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 897 GATGAGTACACAAATGATTGGCTTTACCTTAGAGAAGGAACTATCTTCCCAAAACCAAGA 956
Query 1159 TATCGGATGGGAAGAGGATCGTTTTCAAGTGAAGTATCTGTGATCGTTCACCCTTCAGAT 1218
||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 957 TATCGGATGAGAAGAGGATCGTTTTCAAGTGAAGTATCGGTGATTGTTCACCCTTCAGAT 1016
Query 1219 GTAA-CAAGAGTCAATAGTTCTGGTTCTGTC-GATGCTCCAGCGATGCTAGTACCGAGCC 1276
|||| | |||||||||||||| ||||||| | ||||||||||||||||||||||| ||||
Sbjct 1017 GTAAGC-AGAGTCAATAGTTCCGGTTCTG-CAGATGCTCCAGCGATGCTAGTACCTAGCC 1074
Query 1277 TAGTTCACTCTGTATCTGTTAGAGAAGCAATACAAGAAGTGAGAATGGTTCAGATTTGGG 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TAGTTCACTCTGTATCTGTTAGAGAAGCAATACAAGAAGTGAGAATGGTTCAGATTTGGG 1134
Query 1337 AGCATATGATGGGGTGGTTTGAGATGCAAGGCAAAGAGCTACTAGATGCAGAAGTGTTAA 1396
||||||||||||||||||||||||||||||||| ||||||||| || |||| ||| ||||
Sbjct 1135 AGCATATGATGGGGTGGTTTGAGATGCAAGGCAGAGAGCTACTTGACGCAGGAGTCTTAA 1194
Query 1397 CACCAACTGATCTCTATGAGTCTTTAAAGGGCAGACACGGAAACGAATCATCGATTATCA 1456
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1195 CACCAGCTGATCTCTATGAGTCTTTAAAGGGAAGACACGGAAACGAATCATCGATTATCA 1254
Query 1457 ATGTCGGGCTTCCTTCTTACGCTTTGTTGCATACATTGCTTAGCTCTATAAAAGCTGGTG 1516
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1255 ATGTCGGGCTTCCTTCTTACGCTTTGTTGCATACATTGCTTAGCTCTATTAAAGCTGGTA 1314
Query 1517 TTCATGGTGTGCTTTTGCTTGATGGCTCGGAAGTGACACA-TTTGAATAGACCACAAGAC 1575
||||||||||||| |||||||||||||||| ||||| || |||||||||||| || |||
Sbjct 1315 CTCATGGTGTGCTTCTGCTTGATGGCTCGGAGGTGAC-CAATTTGAATAGACCGCAGGAC 1373
Query 1576 AAGTTCTTGGACTGGGTCTTTAATCCAATAATGGTATTGAAAGATCAGATTCGAGCTCTT 1635
||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||| ||
Sbjct 1374 AAGTTCTTGGACTGGTTCTTTAACCCAATTATGGTACTGAAAGATCAGATTCGAGCGATT 1433
Query 1636 AAACTTGGAGAAAGTGAAGTTAAATACTTAGAGAAAGTTGTTCTCTTTGGAAACCATGAA 1695
||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1434 AAACTTGGAGAAAGTGAGGTTAGATACTTAGGGAAAGTTGTTCTCTTTGGAAACCATGAA 1493
Query 1696 CAAAGGATGGAAGCTTGGGATAATCACAGTAACCCGCCTCAAGAAAACCTTCGAACTGCT 1755
||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct 1494 CAAAGGATGGAAGCTTGGGATAATCTCGGTAACCCGCCTCAAGAAAACCTTCGAGCTGCT 1553
Query 1756 CAAATCCAAGGAATCAGCAGAAGGATGATGGGAATGGTACGGAGCGTATCGAAGCTTCCG 1815
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1554 CAAATCCAAGGAATCAGCAGAAGGATGATGGGAATGGTGCGGAGTGTATCGAAGCTTCCC 1613
Query 1816 ACTTATAGAAGAAGGTTCAGACAAGTGGTTAAGGCTCTAATTACTTATTATTCAGAGAAA 1875
||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||
Sbjct 1614 ACTTATAGAAGAAGGTTCAGACAAGTGGTTAAGGCTCTAATAACTTATCATTTAGAGAAA 1673
Query 1876 CAAGGCTTAAATCGAACCGGTTCCATGAGCTCTGGAGATTTCATTGAAGAGGGT-TAACC 1934
|||||||| |||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 1674 CAAGGCTTGAATCGAACCGGTTCCATGAGTTCTGGAGATTTCATTGAAGAGG-TCTAACC 1732
Query 1935 TAGGA 1939
||||
Sbjct 1733 AAGGA 1737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77589829065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5