BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37040.1
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944158 jgi|Araly1|944158|scaffold_700387.1 1762 0.0
Ahg490916 jgi|Araly1|490916|fgenesh2_kg.7__349__AT4G37050.1 89.8 5e-17
> Ahg944158 jgi|Araly1|944158|scaffold_700387.1
Length=1093
Score = 1762 bits (954), Expect = 0.0
Identities = 1050/1097 (96%), Gaps = 4/1097 (0%)
Strand=Plus/Plus
Query 17 AGCTCGCCGAGAAAGCACAAATGGCGGGCGTGAAATCTCTGCAACCTAGACTCATATCTT 76
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1 AGCTCGCCGAGAAAGCACAAATGGCGGGCGTGAAATCTCTGCAACCCAGACTCATCTCTT 60
Query 77 CCTTTCTCGGCAACAATTCTATTAGATCAACGCAACCACTTATTCATCTCTTTCGCTTCG 136
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTTTCTCGGCAACAATTCTATTCGATCAACGCAACCACTTATTCATCTCTTTCGCTTCG 120
Query 137 ATTTAGGAAGAAGACATGTTTCGATGCAATTATCAAGAACCTTTTCTGGATTAACCGATC 196
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 121 ATTTAGGAAGAAGACATGTTTCGATGCAATTATCAAGAACCTTTTCCGGATTAACCAATC 180
Query 197 TCCTGTTTAATAGAAGAAATGAAGATGAAGTTATTGATGGCAAGAGAAAACGTCTGAGAC 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCTGTTTAATAGAAGAAATGAAGATGAAGTTATTGATGGCAAGAGAAAACGTCTGAGAC 240
Query 257 CGGGAAATGTATCTCCTCGTCGTCCTGTTCCGGGTCATATAACAAAACCTCCTTATGTTG 316
| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 241 CTGGAAATGTATCTCCTCGTCGTCCTGTCCCGGACCATATAACAAAACCTCCTTATGTTG 300
Query 317 ATTCTCTTCAAGCTCCCGGAATCTCAAGTGGACTTGAAGTTCATGATAAGAAAGGTATAG 376
||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 ATTCTTTTAAAGCTCCCGGAATCTCAAGTGGACTTGAAATTCATGATAAGAAAGGTATAG 360
Query 377 AATGCATGAGAGCTTCTGGAATACTTGCAGCTAGGGTTCGAGATTACGCTGGCACTTTGG 436
|||||||||||||||| |||| |||||||||||||||||| || |||||||| |||||||
Sbjct 361 AATGCATGAGAGCTTCCGGAAAACTTGCAGCTAGGGTTCGGGAATACGCTGGGACTTTGG 420
Query 437 TTAAGCCAGGCGTAACCACTGATGAAATCGATGAAGCAGTTCACAATATGATTATTGAGA 496
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTAAGCCAGGCGTAACCACAGATGAAATCGATGAAGCAGTTCACAATATGATTATTGAGA 480
Query 497 ATGGAGCTTATCCTTCGCCTCTTGGTTATGGAGGTTTCCCGAAAAGTGTTTGCACATCTG 556
||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 481 ATGGAGCGTATCCTTCGCCTCTTGGTTATGGAGGTTTTCCGAAGAGTGTCTGCACATCTG 540
Query 557 TGAATGAATGCATTTGCCATGGTATACCAGATTCAAGACCACTTGAGGATGGGGATATTA 616
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 541 TGAATGAATGCATTTGCCATGGAATACCAGATTCAAGACCACTTGAGGATGGGGATATAA 600
Query 617 TCAACATCGATGTCACAGTTTATTTGAATGGTTATCATGGTGATACTTCAGCAACTTTCT 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCAACATCGATGTCACAGTTTATTTGAATGGTTATCATGGTGATACTTCAGCAACTTTCT 660
Query 677 TCTGTGGAAATGTTGACGAGAAGGCTAAAAAGCTAGTCGAGGTGACGAAAGAGTCTCTCG 736
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 661 TCTGTGGAAATGTTGACGAGAAGGCTAAAAAGCTAGTCGAGGTGACAAAAGAGTCTCTCG 720
Query 737 ACAAAGCAATATCAATATGTGGTCCCGGAGTTGAGTACAAGAAAATCGGCAAAGTCATTC 796
||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 721 ACAAAGCTATATCAATATGTGGTCCTGGAGTTGAGTACAAGAAAATCGGCAAAATCATTC 780
Query 797 ATGATCTTGCAGATAAACATAAATATGGAGTTGTTCGACAATTTGTAGGCCACGGGGTTG 856
||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||
Sbjct 781 ATGATCTTGCAGATAAACATAGATATGGGGTTGTTCGACAATTTGTAGGCCATGGGGTTG 840
Query 857 GCAGCGTCTTCCACGCTGATCCAGTTGTTCTGCATTTCCGGAACAATGAAGCTGGACGTA 916
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 841 GCAGCGTCTTCCACGCAGATCCAGTTGTTCTACATTTCCGGAACAATGAAGCTGGACGTA 900
Query 917 TGGTCTTGAATCAAACCTTCACCATTGAACCGATGCTTACAATAGGAAGCAGAAACCCGA 976
||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 901 TGGTCTTGAATCAAACCTTCACCATAGAACCAATGCTTACGATAGGAAGCAGAAACCCGG 960
Query 977 TAATGTGGGATGATAACTGGACCGTGGTAACAGAAGATGCAAGCCTCTCGGCGCAATTCG 1036
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 961 TAATGTGGGATGATAACTGGACCGTGGTAACGGAAGATGCAAGCCTCTCTGCGCAATTCG 1020
Query 1037 AGCATACCATTCTTATAACCAAAGATGGTGCTGAGATTCTAACCAAGTGTTaaaaaaaTG 1096
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1021 AGCATACGATTCTTATAACCAAAGATGGTGCTGAGATTCTAACCAACTGTTAAAAA--TG 1078
Query 1097 ATTCTGAAAAATTGATC 1113
| ||| ||| ||||||
Sbjct 1079 AATCTTAAA--TTGATC 1093
> Ahg490916 jgi|Araly1|490916|fgenesh2_kg.7__349__AT4G37050.1
Length=1438
Score = 89.8 bits (48), Expect = 5e-17
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Minus
Query 1139 AAGGTATGTAAGAATCATATTCTTATTCAAATATTGTTTTGCTCACAAGCA 1189
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1438 AAGGTATGTAAGAATCATATTCTTATTCAAATATTCTTTTGCTCACAAGCA 1388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50932217112
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5