BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37050.1
Length=1541
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490916 jgi|Araly1|490916|fgenesh2_kg.7__349__AT4G37050.1 1790 0.0
> Ahg490916 jgi|Araly1|490916|fgenesh2_kg.7__349__AT4G37050.1
Length=1438
Score = 1790 bits (969), Expect = 0.0
Identities = 1159/1249 (93%), Gaps = 19/1249 (2%)
Strand=Plus/Plus
Query 184 TACAAGATAGAACAGTTGCTTGTCTTCCTCCTTCGTACGGACAACTTGTGACCATTCTTA 243
||| ||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 132 TAC-AGAGAGAACAGTCGCTTGTCTTCCTCCTTCTTACGGACAACTTGTCACCATTCTTA 190
Query 244 GCATCGATGGTGGTGGAATCCGTGGGATCATTCCCGGCACAATCTTAGCTTACCTTGAAT 303
|||||||||||||||| |||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 191 GCATCGATGGTGGTGGGATCCGTGGGATCATTCCCGGCACAGTCTTGGCTTACCTCGAAT 250
Query 304 CACAACTTCAGGAATTGGATGGTGAGGAGGCAAGGCTTGTGGATTATTTCGATGTCATCT 363
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 251 CACAACTGCAGGAATTGGATGGTGAGGAGGCAAGGCTTGTAGATTATTTCGATGTCATCT 310
Query 364 CAGGAACAAGCACCGGAGGTTTGATAGTGGCGATGTTGACCG--C---AC-AAGACCAAA 417
|||| ||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 311 CAGGGACAAGCACCGGAGGTTTGATAGTGGCGATGTTGACCGCACAAGACGAAGACCAAA 370
Query 418 GCGGTGGCCATAGCCGCAACAGCAACCGCCCTTTGTTTGAGGCCAAAGAAATCGTCCCTT 477
||| |||||||||||||| | ||||||| |||||||||||||||||||||||||| ||||
Sbjct 371 GCGATGGCCATAGCCGCACCCGCAACCGTCCTTTGTTTGAGGCCAAAGAAATCGTTCCTT 430
Query 478 TTTATCTCAAACACTCACCCAAAATCTTTCCACAGCCACGAGGGATATTCTGTGGTTGGG 537
||||| ||||||| || ||||||||||| ||||||||||||||| | ||| ||||||||
Sbjct 431 TTTATGTCAAACATTCTCCCAAAATCTTCCCACAGCCACGAGGG--A-TCTCTGGTTGGG 487
Query 538 GTGAAACCATAGTGAGACTTGTAGGAGGACCCAAGTTCAACGGTAAATACCTTCATGACT 597
|||||| | | |||||||||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 488 GTGAAAACTTGGTGAGACTTGTACGAGGACCCAAGTTCAACGGGAAATACCTTCATGAAT 547
Query 598 TAGTTGAAGGTTTCTTGGGCGACACAAAATTAACTCAATCTTTGACAAACGTTGTCATAC 657
|||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 548 TAGTTGAAGGTTTCTTGGGCGACAGAAAACTATCTCAATCTTTGACAAACGTTGTCATAC 607
Query 658 CTTGCTTCGACATCAAGAAACTCCAACCAGTTATCTTCTCTTCTTACCAGGCGGTGAATA 717
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 CTTGCTTTGACATCAAGAAACTCCAACCAGTTATCTTCTCTTCTTACCAGGCGGTGAATA 667
Query 718 ATCAAGCTATGAACGCAAAACTATCAGACATATGTATAAGTACATCTGCGGCACCAACTT 777
|||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 668 ATCAAGCTATGAACGCGAAACTATCAGACATATGTATAAGCACATCTGCCGCACCAACTT 727
Query 778 -TTTTCCCGGCTCATCGATTCACCAATGAAGACAGTGAAGG-AATTAAACATGAATTCAA 835
|||||| ||||||||| |||||||| |||||||||||||| || ||||||||||||||
Sbjct 728 ATTTTCC-GGCTCATCGGTTCACCAACGAAGACAGTGAAGGGAAA-AAACATGAATTCAA 785
Query 836 CCTCATTGATGGTGGCATCGCTGCCAATAACCCGACGTTATGTGCCATTGCGGAAGTGAC 895
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 786 CCTCATTGATGGTGGTATCGCTGCCAATAACCCGACGTTATGTGCTATTGCGGAAGTGAC 845
Query 896 AAAACAGATAATAAAGAAGAATCCTGTAATGGGAGATATAAGCCCATTAGATTTTACGAG 955
||| |||||||| ||||||||||| | ||||||||| ||||||||||| |||||||||||
Sbjct 846 AAAGCAGATAATTAAGAAGAATCCAGCAATGGGAGACATAAGCCCATTGGATTTTACGAG 905
Query 956 GTTTCTGGTGATATCGATAGGTACAGGTTCCAT-AAGGAATCAAGAGAAGTACAATGCGA 1014
|||| ||||||||||||| || |||||||| || ||| |||||||| |||||||||||||
Sbjct 906 GTTTTTGGTGATATCGATTGGGACAGGTTCGATTAAG-AATCAAGAAAAGTACAATGCGA 964
Query 1015 AAATGGCATCGAAATGGGGATTGATGTGTTGGGTCTTTGAAAGTGGATCAACTCCAATTC 1074
||||||| ||||||||||||||||| |||||| || |||||| |||||||||||||||||
Sbjct 965 AAATGGCGTCGAAATGGGGATTGATCTGTTGGATCATTGAAAATGGATCAACTCCAATTC 1024
Query 1075 TTGATTGTTACAGTGAAGCTATTCATGACATGGTTGATTACCAAAGCTCTGTCGTCTTTC 1134
|||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 1025 TTGACTGTTACAGTGAAGCAATACATGACATGGTTGACTACCAAAGCTCTGTCGTCTTTC 1084
Query 1135 AAGCTCTTCGTTCCGAGAAGAATTATTTACGTATCGATGATGATTCGTTGAAGGGTGACT 1194
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1085 AAGCTCTTCGTTCCGAGAAGAATTATTTACGTATCGATGACGATTCGTTGAAGGGTGACT 1144
Query 1195 TAGGTTCAGTGGACATATCAACAGAAAAGAACATGGAAGGTCTTGTTGAAGTTGGTGAAG 1254
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 TAGGTTCGGTGGACATTTCGACAGAAAAGAACATGGAAGGTCTTGTTGAAGTTGGTGAAG 1204
Query 1255 CTTTATTAAAGAAAAGAGTCTCTCGTGTCAATCTCGAAAGC-GGCCATTATCAACCTATT 1313
||||||| ||||| ||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1205 CTTTATTGAAGAAGAGAGTCTCTCGTGTCAATCTCGAAA-CTGGCCATTATCAACCTATC 1263
Query 1314 TCCGAAAATGTGACTAATGAAGAAGCTCTCAAAAGGTTTGCAAAAGTTCTGTCAGAAGAA 1373
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1264 TCTGAAAATGTGACTAATGAAGAAGCTCTCAAAAGGTTTGCAAAGGTTCTGTCAGAAGAA 1323
Query 1374 AGGAAGCTCAGAGAATCAAGATCTCCTAAACTCAAGATATGA-TTTTTT 1421
||||| ||||| |||||||||||||||||||||||||| ||| ||||||
Sbjct 1324 AGGAAACTCAGGGAATCAAGATCTCCTAAACTCAAGATCTGAATTTTTT 1372
Score = 196 bits (106), Expect = 3e-49
Identities = 132/144 (92%), Gaps = 4/144 (3%)
Strand=Plus/Plus
Query 1 ATCACATTTATCACCATCTCTATCTTGAAAAGGAG-AAATAAATAATTAATCACTAAGCG 59
||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||| |
Sbjct 1 ATCACATTTATCACCATCTCTATCTTG-AAAGGAGAAAAAAAAT-ATTAATCACTAACCA 58
Query 60 AAAGAGATTTGATCTAAAGTAATACAAATAAACCTTGATTGAGATTGTAAAGGAGAAGAG 119
||| |||||||||| |||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 59 AAATAGATTTGATC-GAAGTTATACAAATAAACCTTGATTGAGATTATAAAGGAGAAGAG 117
Query 120 TTTAAAAGCATGGATACAGAGAGA 143
| ||||||||||||||||||||||
Sbjct 118 TGTAAAAGCATGGATACAGAGAGA 141
Score = 89.8 bits (48), Expect = 6e-17
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1491 TGCTTGTGAGCAAAACAATATTTGAATAAGAATATGATTCTTACATACCTT 1541
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1388 TGCTTGTGAGCAAAAGAATATTTGAATAAGAATATGATTCTTACATACCTT 1438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57706721175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5