BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37070.2
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490917 jgi|Araly1|490917|fgenesh2_kg.7__350__AT4G37070.2 1845 0.0
> Ahg490917 jgi|Araly1|490917|fgenesh2_kg.7__350__AT4G37070.2
Length=1318
Score = 1845 bits (999), Expect = 0.0
Identities = 1189/1282 (93%), Gaps = 8/1282 (1%)
Strand=Plus/Plus
Query 27 CTCAAAAGAAGATCGATCAACTATTATGGAGAACAAATCG-CCCTCCAAGAAAAACAAAC 85
||||||||||||||||||||| | |||||||||| | ||| || | ||||||||||||||
Sbjct 1 CTCAAAAGAAGATCGATCAACCAATATGGAGAACGACTCGACCAT-CAAGAAAAACAAAC 59
Query 86 CGCCATCGTGCGGATCACTCGTAACCATCCTCAGCCTTGATGGTGGTGGAGTCAGAGGAA 145
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 60 CGCCATCGTGCGGCTCACTCGTAACCATCCTCAGCCTCGATGGTGGTGGAGTCAGAGGAA 119
Query 146 TCATCGCCGGAGTAATCCTTGCCTTTCTCGAAAAACAACTTCAGGAACTCGATGGAGAAG 205
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 TCATCGCCGGAGTAATCCTTGCCTATCTCGAAAAACAACTTCAGGAACTCGATGGAGAAA 179
Query 206 AGGCGAGGCTTGCGGATTACTTCGACGTGATAGCTGGAACTAGCACCGGTGGTCTTGTGA 265
| | |||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACGTGAGGCTAGCTGATTATTTCGACGTGATAGCTGGAACTAGCACCGGTGGTCTTGTGA 239
Query 266 CGGCGATGTTGACTGTACCGGACGAGACCGGTCGACCTCATTTCGCGGCTAAAGACATTG 325
||||||||||||||| |||||||| ||| |||||||||| || |||||| ||||||||||
Sbjct 240 CGGCGATGTTGACTGCACCGGACGGGACTGGTCGACCTCGTTACGCGGCCAAAGACATTG 299
Query 326 TGCCGTTTTACCTTGAACATTGTCCCAAGATATTTCCCCAGCCCACAGGCGTGCTTGCTC 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGCCGTTTTACCTTGAACATTGTCCCAAGATATTTCCCCAGCCCACAGGCGTGCTTGCTC 359
Query 386 TGTTACCGAAGCTTCCAAAGCTTCTGTCTGGTCCAAAGTACAGCGGAAAGTATCTGCGAA 445
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 360 TGTTACCGAAGCTTCCAAAGCTTCTGTCTGGTCCAAAGTACAGCGGAAACTATCTGCGAA 419
Query 446 ATCTTCT-GAGTAAGCTTCTTGGAGAGACAAGACTTCACCAGACCCTCACAAACATTGTT 504
||| | | ||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 420 CTCTAGTTG-GTACGCTTCTTGGAGAGACAAAACTTCACCAGACACTCACAAACATTGTT 478
Query 505 ATACCTACCTTCGATATCAAGAAACTTCAACCCACTATTTTCTCCTCTTACCAG-CTGTT 563
|||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| | |||
Sbjct 479 ATACCTACCTTCGACATCAAGACACTTCAACCCACTTTTTTCTCCTCTTACCAGGC-GTT 537
Query 564 GGTTGACCCTAGCTTGGATGTCAAGGTATCAGACATATGCATCGGCACTTCAGCTGCTCC 623
|| ||||||||||||| | ||||||||||||||||||||| ||||||| |||||||||||
Sbjct 538 GGCTGACCCTAGCTTGAACGTCAAGGTATCAGACATATGCCTCGGCACATCAGCTGCTCC 597
Query 624 CACTTTCTTTCCTCCCCATTACTTTTCCAACGAAGACAGTCAAGGCAATAAGACGGAGTT 683
||||||||||||| | ||||||||||||| ||||||||||||||| || | | ||||||
Sbjct 598 CACTTTCTTTCCTGCTCATTACTTTTCCATCGAAGACAGTCAAGGAAAGACTAGGGAGTT 657
Query 684 TAATCTCGTTGATGGCGCGGTTACTGCTAATAACCCGACTTTGGTGGCCATGACAGCTGT 743
||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 658 TAACCTCGTTGATGGCGCGGTTACTGCTAATAACCCGACTTTGGTGGCCATCACTGCCGT 717
Query 744 GTCTAAGCAGATTGTGAAGAATAATCCTGATATGGGTAAGCTCAAGCCGTTAGGTTTCGA 803
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 718 GTCAAAGCAGATTGTGAAGAATAATCCTGATATGGGTACGCTCAAGCCGTTAGGTTACGA 777
Query 804 CCGGTTTCTCGTTATATCGATAGGAACAGGATCAACAAAAAGGGAAGAGAAGTACAGCGC 863
|| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 778 CCAGTTTCTCGTTATATCGATAGGAACAGGATCTACAAAAAAAGAAGAGAAGTACAGCGC 837
Query 864 AAAAAAGGCTGCAAAATGGGGGATCATATCTTGGTTATATGACGATGGATCTACTCCGAT 923
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 838 AAAGAAGGCTGCAAAATGGGGAATCATATCTTGGTTATATGAAGATGGATCTACTCCAAT 897
Query 924 ATTAGACATTACCATGGAATCAAGCCGCGACAT-GATCCATTATCACAGCTCTGTTGTGT 982
||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| |||
Sbjct 898 ATTAGACATTACCATGGAATCAAGCCGCGACATCG-TCCATTATCATAGCTCTGTTTTGT 956
Query 983 TTAAAGCCCTACAATCTGAAGACAAGTACCTCCGAATCGATGATGATACATTGGAAGGAG 1042
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 957 TTAAAGCCCTAGAATCTGAAGACAAGTACCTCAGAATCGATGATGATACATTGGAAGGAG 1016
Query 1043 ATGTAAGCACTATGGATCTAGCGACAAAGTCTAACTTGGAGAATCTTCAAAAGATTGGAG 1102
||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1017 ATGTAAGCAATATGGATCTAGCGACAAAGTCTAACTTAGAGAATCTTAAAAAGATTGGAG 1076
Query 1103 AGAAGATGCTGACAAACAGAGTCATGCAAATGAACATCGACACTGGTGTATATGAACCTG 1162
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1077 AGAAGATGCTGACAAACAGAGTCGCGCAAATGAACATCGACACTGGTGCATATGAACCTA 1136
Query 1163 TTGCTGAAAATATTACCAATGATGAACAGCTAAAGAGGTATGCAAAAATTCTCTCGGACG 1222
|| ||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||||||
Sbjct 1137 TTACTGAAAATATTACCAATGATGAACAACTAAAGAGGTTTGCGAAAATCCTCTCGGACG 1196
Query 1223 AAAGGAAATTAAGGAGACTAAGAAGCGACACAATGATTAAAGATTCATCAAATGAATCAC 1282
||||||||||||||||||| || |||||||| ||||| |||||| || |||| | |||||
Sbjct 1197 AAAGGAAATTAAGGAGACTGAGGAGCGACACGATGATGAAAGATCCACCAAACGGATCAC 1256
Query 1283 AAGAGATAAAATAAAAGGAAAT 1304
| |||| ||||||||||||||
Sbjct 1257 CATAGATCAAATAAAAGGAAAT 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53364433245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5