BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37080.2
Length=2320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490923 jgi|Araly1|490923|fgenesh2_kg.7__356__AT4G37080.1 2887 0.0
> Ahg490923 jgi|Araly1|490923|fgenesh2_kg.7__356__AT4G37080.1
Length=1986
Score = 2887 bits (1563), Expect = 0.0
Identities = 1742/1828 (95%), Gaps = 13/1828 (1%)
Strand=Plus/Plus
Query 327 GAGAAGAAGAAGATGGAGTCTCAAGGCAATGGAGCTGTTGCTAATTCAGGAAAATCTCTG 386
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 55 GAGAAGAAGAAGATGGAGTCTCAAGGCAATGGAGCTGTTGCTAGTTCAGGAAAATCTCTG 114
Query 387 GTTAATCGCCGACGAGCTAACAAAGAAAAGAAAATGGATTTGCTACAAGATGTTGATAAG 446
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 115 GTTAATCGCCGCCGAGCTAATAAAGAAAAGAAAATGGATTTGCTACAAGATGTTGATAAG 174
Query 447 CTTAAGAGGAAGCTGAGACAGGAGGAGAATGTTCATAGAGCATTGGAGAGAGCTTTTACT 506
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 175 CTTAAGAGGAAGCTTAGACAGGAGGAGAATGTGCATAGAGCATTGGAGAGAGCTTTCACT 234
Query 507 AGACCTTTAGGAGCTTTACCTCGTCTTCCGTCTTACCTCCCTCGACATACATTGGAGCTT 566
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 235 AGACCTTTAGGAGCTTTACCTCGTCTTCCGTCTTATCTCCCTCGACATACATTGGAGCTT 294
Query 567 CTTGCTGAAGTAGCTGTTCTTGAAGAGGAAGTGGTTCGGTTAGAGGAGCAAGTTGTAAAC 626
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 295 CTTGCTGAAGTAGCTGTTCTTGAAGAGGAAGTGGTTCGGTTAGAAGAGCAAGTTGTTAGC 354
Query 627 TTTAGACAAGGTTTATACCAAGAAGCTGTTTACATATCTTCAAAGAGGAATCTGGAGAGT 686
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 355 TTTAGACAAGGTTTATACCAAGAAGCTGTTTACATATCTTCCAAGAGGAATATGGAGAGT 414
Query 687 CCTAATAACAACAGTTTGAATGAGAATTCGCCCGTTAGAAGCACTAAACACCAGAGATCG 746
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 415 CCTAATAACAACAGTTTGAACGAGAATTCGCCTGTTAGAAGCACTAAACACCAGAGATCG 474
Query 747 AAATCAATGTCGCAACACGAGTTCAATTCTATGATCACTCC-CACTAAAAAGCATCAACA 805
||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 475 AAATCCATGTCGCAACACGAGTTCAATTCTATGATCACTCCTC-CTAAAAAGCATCAACA 533
Query 806 GTCTCTTAGCAGAAGCATCTCAAGTAGGAAACTCTTCTCCTCTGATCAAACAGTTAATGA 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GTCTCTTAGCAGAAGCATCTCAAGTAGGAAACTCTTCTCCTCTGATCAAACAGTTAATGA 593
Query 866 CCGAAGTGGTCAGAGAGTGGTAAGTGGCAAACAAGCGTCGCCTAAATCAAATCTAAGCAG 925
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 594 TCGAAGTGGTCAGAGAGTGGTAAATGGCAAACAAGCGTCGCCTAAACCAAATCTAAGCAG 653
Query 926 TGTTACTAATACTAAGCCAGTAGATGTGAGAGGGAAAGAGAATCAGACCTCTAGTAATGC 985
|||||| | ||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 654 TGTTAC----A--AAGCCAGTAGATGTGAGGGGGAAAGAGAATCAGACCTCTAGTAATCC 707
Query 986 TTCAAAAGACAAGAAAAATAAAGAATCACCTGAGAAGAAGCTTGGCAGATTCTTGACATC 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TTCAAAAGACAAGAAAAATAAAGAATCACCTGAGAAGAAGCTTGGCAGATTCTTGACATC 767
Query 1046 TGTGAAGAAGAAGAAACCTTTGATTAAGCCGGAGGCTGCAGCGGATAAACACTCAGAATC 1105
|||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||||||
Sbjct 768 TGTGAAGAAGAAGAAACCGTTGAGTAAACCAGAGGCAGCAGCGGATAAACACTCAGAATC 827
Query 1106 AACCAAATTGCAGCTAGATGATAGATTAGCAGATCAGGACAAAGCTCAAGAGAGTGTGTC 1165
|| ||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||
Sbjct 828 AATCAAATTGCAGCTAGATGATAGATTAACAGATCAGGATAAAGCACAAGAGAGTGTGTC 887
Query 1166 AGGATCATCTTCGGAAGACAAGACACTGCAAAGTGGAAATGTAGCAAACAGAGTTTCAGA 1225
|||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 888 AGGATCATCTTCAGAAGACAAGACAGTGCAAAATGGAAATGTAGCAAACAGAGTTTCAGA 947
Query 1226 GGATTTACTGAAATGTCTTGTGACTATTATCTTGAGGATTAGCTCGTCCAAGGACATTGT 1285
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 948 GGATTTACTGAAATGTCTTGTGACTATTATCTTGAGGATTAGCTCGTCGAAGGACATTGT 1007
Query 1286 GTTGGATCCATATAATAACTGCTCAGAGTGGAGAACAAGAGAACTTGGTGCATACAAGCA 1345
||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| |||
Sbjct 1008 GTTGGATCCATATAATAACTGTTCAGAATGGAGAACAAGAGAGCTTGGTGCATACACGCA 1067
Query 1346 TTTTTCGTCGGTCGATACATCTTCAGTTGATCTTGGACGAAGAATCAATGCTTCATTTCT 1405
| |||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1068 TCTTTCCTCGGTTGATGCATCCTCAGTTGATCTTGGACGAAGAATCAATGCTTCATTTCT 1127
Query 1406 GATCCATCGTCTCAAGTTCCTGCTTAATAAGCTTTCTGTTGTCAATCTAGACGGTCTTAG 1465
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1128 GATCCATCGTCTCAAGTTCCTGCTTAATAAGCTTTCGGTTGTCAATTTAGACGGTCTTAG 1187
Query 1466 CCACCAGCAGAAGCTTGCATTCTGGATAAATACTTATAATTCCTGCGTTATGAATGCATT 1525
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1188 CCACCAGCAGAAGCTTGCATTCTGGATAAATACTTATAATGCCTGCGTGATGAATGCATT 1247
Query 1526 CTTGGAGCACGGGATCCCGGCGACTCCTGAAATGGTTGTAGCGCTGATGCAGAAGGCAAC 1585
|||||||||||| ||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct 1248 CTTGGAGCACGGAATCCCGGGGACCCCTGAAATGGTTGTAGCCCTGATGCAGAAGGCAAC 1307
Query 1586 AATAATTGTGGGAGGACACTCGCTAAATGCAATCACAATCGAACATTTCATCTTGAGACT 1645
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 AATAATCGTAGGAGGACACTCGCTAAATGCAATCACAATCGAACATTTCATCTTGAGACT 1367
Query 1646 TCCATACCACTTGAAATTCACTTGTCCCAAAACTGCAACACATGAAGAAATGAGAGCTCA 1705
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1368 TCCATACCACTTGAAATTCACTTGTCCCAAAACTGCAACACATGAAGAGATGAGAGCTCA 1427
Query 1706 TAGCACATTTGGATTGGAATGGTCAGAGCCCTTGGTCACATTCGCTCTCGCCTGTGGAAG 1765
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1428 TAGTACATTTGGATTGGAATGGTCAGAGCCTTTAGTCACATTCGCTCTCGCCTGTGGAAG 1487
Query 1766 CTGGTCCTCTCCTGCTGTAAGGGTCTACACAGCAGCTAATGTAGAGGAAGAGCTAGAAGC 1825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 CTGGTCCTCTCCTGCTGTAAGGGTCTACACAGCAGCTAATGTAGAGGAAGAGCTAGAAGC 1547
Query 1826 TGCAAAGAGAGATTATCTGCAAGCATCAGTTGGGATATCAAAGAACAACAAACTAATGCT 1885
|||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1548 TGCAAAGAGAGATTATCTTCAAGCATCAGTAGGGATCTCAAAGAAGAACAAACTAATGCT 1607
Query 1886 TCCAAAGGTATTAGATTGGTACTTACTCGACTTTGCCAAGGATTTGGAATCGTTACTGGA 1945
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1608 TCCAAAGGTGTTAGATTGGTATTTACTCGACTTTGCCAAGGATTTGGAATCGTTGCTCGA 1667
Query 1946 TTGGGTTTGCCTTCAGTTACCTGATAAACTAAGAGAAGAAGCAACTAAGTGTATGGAGAG 2005
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1668 TTGGGTTTGCCTTCAGTTACCTGATAAACTAAGAGAAGAAGCAAATAAGTGTATGGAGAG 1727
Query 2006 AAAGAACAAAGAATCACTAATGGAATTGGTTCAAGTAGTACCATATGACTTCAGTTTCAG 2065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 AAAGAACAAAGAATCACTAATGGAATTGGTTCAAGTAGTACCATATGACTTCAGTTTCAG 1787
Query 2066 ATTGCTTTTGCATCAATGAATaaaaaaaT--GTTAAA-CACTGTATAGATTTGGGTTGGG 2122
|| |||||||||||||||||||||||| || ||| || ||||||||||||| |||||
Sbjct 1788 GTTACTTTTGCATCAATGAATAAAAAAAAAAGTGAAAACATTGTATAGATTTGGATTGGG 1847
Query 2123 GAGAGAG-TAAAGTAGAGCGCATGAGTT 2149
|| | || ||| ||||||||||||||||
Sbjct 1848 GAAA-AGGTAAGGTAGAGCGCATGAGTT 1874
Score = 115 bits (62), Expect = 1e-24
Identities = 77/83 (93%), Gaps = 6/83 (7%)
Strand=Plus/Plus
Query 2185 ATATATAGATTATATGGTTGTGTTC--TTTT-ACTATAAAGTGATGTAAAATTCATTCAA 2241
|||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1878 ATATATAG---ATATGGTTGTGTTCTTTTTTCACTATAAAGTGATGTAAAATTCATTCAA 1934
Query 2242 TTGATTTTTATTTGTAATGCTAT 2264
|||||||||||||||||||||||
Sbjct 1935 TTGATTTTTATTTGTAATGCTAT 1957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87379022030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5