BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37090.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944165 jgi|Araly1|944165|scaffold_700394.1 846 0.0
> Ahg944165 jgi|Araly1|944165|scaffold_700394.1
Length=609
Score = 846 bits (458), Expect = 0.0
Identities = 558/605 (92%), Gaps = 11/605 (2%)
Strand=Plus/Plus
Query 89 GAAGATAAATCAGATTCGATGTCGGATAATAAAGACCGTGATTCCGATTCCGATGCTCCG 148
|||||| ||| ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 5 GAAGAT-CATCTGATTCGATGTCGGATAATAAAGACCACGATTCTGATTCCGATGCTCCG 63
Query 149 GAGGAATTAACCCAGGAGCAGGCGAAGCTGGAAGAGGAAGCACTGTGGAAAATACAGAGA 208
|| ||||| ||||| |||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 64 GAAGAATTCACCCAAGAGCAGGCGAAGCTGGAAGATGAAGCATTGAGGAAAATACAGAGA 123
Query 209 GAGAATAAGAATAGGGTTTCCCGTGAGAAGAAAGAGAGGCGCAAGCTTATGGCAGAGCAA 268
|||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 124 GAGAATAAGACTAGGATTACCCGTGAAAAGAAAGAGAGGCGCAAGCTTATGGCAGAGCAA 183
Query 269 GTAACTCTCC-GAAAATCTCGAAAGATTGAAATAATT-GAGGATGT------AGTAGAAG 320
|||| | || ||||| |||| |||||||||| |||| |||||||| || |||||
Sbjct 184 ATAACGCCCCGGAAAA-CTCGGAAGATTGAAA-AATTCGAGGATGTAGAAAAAGAAGAAG 241
Query 321 AAGAAGAACCTGAGGAAAACTCTGAAGCTCTTGCAAACAAGGGATTCCTTTCCAAAGACA 380
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 242 AAGAAGAACCTGAGGAAAACTCTGAAGCTCTTGCAAAGAAGGGATTCCTTTCCAAAGACA 301
Query 381 TCATAGACTTTCTTGCGGAGCGAGAAAAACAAAAAGCTGAGTCAGATTCTGAAGAAGAAG 440
|||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |
Sbjct 302 TCATAGACTTTCTTGCAGAGCGAGAAAAACAAAATGCCGAGTCAGATTCTGAAGAAGATG 361
Query 441 AGATCATAGACGAACTCCCAAGAAAGaaaaagcaaaaaaGCTCAGGGATCGAAACGGTTA 500
|||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 362 AGATCATAGACGAACTTCCGAGAAAGAAAAAGCAAAAAAGCTCAGGGATCGAAACAGTTA 421
Query 501 TTTACAAGGAGATTCCACCACCAGAATGCTTGAAAACCGGGTTAGATTTCTTGAAGATGA 560
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 422 TTTACAAGGACATTCCACCACCGGAATGCTTGAAAACCGGGTTAGATTTCTTGAAGATGA 481
Query 561 GGAGAGCGCAAGTCCCCAGATCGTCTTCAGTCATCAAGAACTCCGGCCAAGCTCTCCGAC 620
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 482 GGAGAGCGCAAGTCCCGAGATCGTCTTCAGTCATCAAGAACTCCGGCCAAGCCCTTCGAC 541
Query 621 TTGCCACCGGTGCTGCTTTAGCCAAGAAACAGCGACAGAGAAAGTGAAAATTAAGATGTA 680
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 542 TTGCCACCGGTGCTGCTTTAGCCAAGAAGCAACGACAGAGAAAGTGAAACTTAAGATGTA 601
Query 681 AAATT 685
|||||
Sbjct 602 AAATT 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5