BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37100.1
Length=2691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944166 jgi|Araly1|944166|scaffold_700395.1 4396 0.0
Ahg481220 jgi|Araly1|481220|fgenesh2_kg.4__280__AT2G23520.1 1604 0.0
Ahg496904 jgi|Araly1|496904|fgenesh2_kg.8__2720__AT5G66950.1 645 0.0
> Ahg944166 jgi|Araly1|944166|scaffold_700395.1
Length=2732
Score = 4396 bits (2380), Expect = 0.0
Identities = 2591/2694 (96%), Gaps = 9/2694 (0%)
Strand=Plus/Plus
Query 1 ATGCATTTCTCTCTGTGGAAGCAAATTCATCACTGTGCTTCTCTGATCTTAGACAAGAGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 ATGCATTTCTCTCTGTGGAAGCAAATTCATCACTGTGCTTCTCTGATCTTAGACAAGAGT 84
Query 61 AAGAGC--AGCAGG-AGAAGAAGAGATGGGTCTGATTCGTCTCTCAATGTCAAGAAAAAA 117
|||||| || ||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 85 AAGAGCAGAGGAGGAAGAAGAAGGGATGGCTCTGATTCGTCTCTCAATGTCAAGAAAAAA 144
Query 118 GCTGCACTGATTCGGAAATTGTATGAAGATAAGCTCAGGGAAGCTTTAGAAGAAGCTTCT 177
|||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 145 GCTGCATTGATTCGGAAACTCTATGAAGATAAGCTCAGGGAAGCTTTAGAAGAAGCTTCT 204
Query 178 GAGAATGGCTCACTCTTCAAATCCCAAGACATTGACCAAGATAATGGAGATGGAAGCTTG 237
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 205 GAAAATGGGTCACTCTTCAAATCCCAAGACATTGACCAAGATAATGGTGATGGAAGCTTG 264
Query 238 GGTCGTTCCAGATCCTTAGCTAGACTTCACGCGCAGCGTGAGTTTCTACGCGCCACTGCT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 GGTCGTTCCAGATCCTTAGCTAGACTTCACGCGCAGCGTGAGTTTCTACGCGCCACTGCT 324
Query 298 TTAGCAGCTGAACGTATTATCGAATCAGAAGACTCAATTCCTGAGCTCCGTGAAGCTTTG 357
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 325 TTAGCAGCTGAACGTATTATCGAATCAGAAGACTCTATTCCTGAGCTCCGTGAAGCTTTG 384
Query 358 ACCAAGTTTCTGAGCATGTACCCAAAGTATCAAGCTTCTGAGAAGATTGATCAGTTAAGA 417
|| ||||| || | ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 385 ACTAAGTTCCTTCGAATGTATCCAAAGTACCAAGCTTCTGAGAAGATTGATCAGTTAAGA 444
Query 418 TCTGATGAGTATAGTCACTTATCATCATCAGCTTCTAAGGTATGTCTTGATTACTGTGGA 477
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 445 TCTAATGAGTATAGTCACTTATCATCATCAGCTTCAAAGGTATGTCTTGATTACTGTGGA 504
Query 478 TTTGGTCTCTTCTCTTATGTTCAGACTCTGCACTATTGGGATACTTGTACGTTTAGTCTC 537
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 505 TTTGGTCTCTTCTCTTATGTTCAGACTCTGCACTATTGGGATACTTGTACCTTTAGTCTC 564
Query 538 TCTGAGATAACTGCCAATTTGAGTAACCATGCGCTTTACGGTGGAGCTGAGAGTGGAACT 597
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 565 TCTGAGATTACTGCCAATTTGAGTAACCACGCGCTTTACGGTGGAGCTGAGAGTGGAACT 624
Query 598 GTGGAACATGATATTAAAACTAGGATTATGGACTATTTGAACATCCCTGAGAATGAGTAT 657
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 625 GTGGAACATGATATCAAAACTAGGATCATGGACTATTTGAACATCCCTGAGAATGAGTAT 684
Query 658 GGTCTTGTTTTCACAGTTAGTAGAGGCTCTGCTTTTAGATTGTTAGCGGAATCTTATCCT 717
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 685 GGTCTTGTTTTCACAGTGAGTAGAGGCTCTGCTTTCAGATTGTTAGCGGAATCTTATCCT 744
Query 718 TTTCAGTCGAATAAGCGGCTTTTGACAATGTTTGATCACGAGAGCCAGTCTGTGAATTGG 777
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 745 TTTCAGTCGAATAAGCGGCTTTTGACAATGTTCGATCACGAGAGCCAGTCTGTGAATTGG 804
Query 778 ATGGCGCAGACAGCGAGGGAGAAAGGCGCAAAGGCTTATAATGCTTGGTTTAAATGGCCT 837
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 805 ATGGCGCAGACAGCGAGGGAGAAAGGCGCAAAGGCTTATAACGCTTGGTTTAAATGGCCA 864
Query 838 ACTTTGAAGCTTTGTTCGACTGATTTGAAGAAACGGTTGTCTTATAAGAAGAGGAAGAAG 897
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 865 ACTTTGAAGCTTTGTTCGACTGATTTAAAGAAACGGTTGTCTTATAAGAAGAGGAAGAAG 924
Query 898 AAGGATTCCGCGGTTGGGTTGTTTGTGTTTCCTGCTCAGTCTCGTGTTACGGGTACTAAG 957
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 925 AAGGATTCCGCGGTTGGGCTGTTTGTGTTTCCTGCTCAGTCTCGTGTTACGGGTACTAAG 984
Query 958 TATTCTTACCAGTGGATGGCTTTAGCTCAGCAGAACCATTGGCATGTGTTGCTTGATGCT 1017
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 TATTCTTATCAGTGGATGGCTTTAGCTCAGCAGAACCATTGGCATGTGTTGCTTGATGCT 1044
Query 1018 GGTTCTTTAGGTCCCAAAGATATGGATTCGCTTGGTTTGTCATTGTTCCGGCCTGAGTTT 1077
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1045 GGTTCTTTAGGTCCCAAAGATATGGATTCGCTCGGTTTGTCATTGTTCCGGCCTGAGTTT 1104
Query 1078 ATCATTACCTCGTTCTACCGTGTATTTGGTCATGACCCGACAGGATTTGGTTGCCTGTTG 1137
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1105 ATCATTACCTCGTTCTACCGTGTATTTGGGCATGACCCGACGGGATTTGGTTGCCTGTTG 1164
Query 1138 ATTAAAAAATCAGTTATGGGAAGCCTTCAGAGTCAATCAGGGAAAACTGGATCAGGTATA 1197
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1165 ATTAAAAAATCAGTTATGGGAAGCCTTCAGAGTCAATCTGGGAAAACAGGATCAGGTATA 1224
Query 1198 GTGAAGATCACGCCTGAATATCCGTTATATCTCAGTGATTCAGTAGATGGTCTTGACGGA 1257
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1225 GTGAAGATCACGCCTCAATATCCGTTATATCTTAGTGATTCAGTAGATGGTCTTGACGGA 1284
Query 1258 TTGGTTGGTTTTGAAGATCACAATGACGATAAAACCAAAGAAGCTCATCGTCCAGGAACT 1317
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1285 TTGGTTGGTTTTGAAGATCACAATGAAGATAAAGCCAAAGAAGCTCATCGTCCAGGAACT 1344
Query 1318 CAGATGCCAGCTTTCTCAGGTGCATACACTTCAGCACAAGTGAGGGATGTGTTTGAAACA 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 CAGATGCCAGCTTTCTCAGGTGCATACACTTCAGCACAAGTGAGGGATGTGTTTGAAACA 1404
Query 1378 GAGCTCCTAGAAGATAACATATCTTCTGATAGAGATGGAACTACTAGCACCACAATTTTT 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 GAGCTCCTAGAAGATAACATATCTTCTGATAGAGATGGAACTACTAGCACCACAATTTTT 1464
Query 1438 GAAGAAACAGAAAGTGTTTCGGTTGGAGAACTCATGAAAAGTCCGGTTTTTAGTGAAGAT 1497
|||||||| ||||||||||||||||||||| | |||||||| ||||||||||| ||||||
Sbjct 1465 GAAGAAACGGAAAGTGTTTCGGTTGGAGAATTGATGAAAAGCCCGGTTTTTAGCGAAGAT 1524
Query 1498 GAGTCATCCGACAATTCGTTTTGGATTGATTTGGGTCAAAGTCCTCTTGGTTCTGATCAG 1557
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 GAGTCATCGGACAATTCGTTTTGGATTGATTTGGGTCAAAGTCCTCTTGGTTCTGATCAG 1584
Query 1558 CATAATAAGATTGCATCTCCACTGCCACCAATTTGGTTAACCAACAAGAGAAAACAGAAA 1617
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct 1585 CATAATAAGATTGCATCTCCGCTGCCACCTATTTGGTTGACCAACAAGAGAAACCAGAAA 1644
Query 1618 CAACGACAGTCGCCTAAACCAATACCGAAGAGTTACAGCAGTCCATTGTATGATGGTAAC 1677
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1645 CAAAGACAGTCGCCTAAACTAATACCGAAGAGTTACAGCAGTCCATTGTATGATGGTAAT 1704
Query 1678 GACGTCCTCTCGTTTGATGCTGCCGTTATGTCAGTTACAGAGCACGGGACAAACTCGACT 1737
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1705 GACGTCCTCTCATTTGATGCTGCCGTTATGTCAGTTACAGAGCACGGGACAAACTCAACT 1764
Query 1738 CCATCGCGGAATAGGAGGAGCTCTAGTAACCATCTCCATGTTCAAGAGATACAGGAAGAA 1797
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1765 CCATCGCGGAATAGGAGGAGCTCTAGTAACCATCTCTATGTTCAAGAGATACAGGAAGAG 1824
Query 1798 AACTGTGGTCATAGCTTTGCAAATGGCTTGAAATCTTCCAACATTTCATCAGAAATCAAA 1857
||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1825 AACTGCAGTCATAGCTTGGCAAATGGCTTGAAATCGTCCAACATTTCATCAGAAATCAAA 1884
Query 1858 GAGAGTGCTATTAGACGAGAAACAGAAGGAGAATTCAGGTTATTGGGAGGAAGAGATGGT 1917
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1885 GACAGTGCTATTAGACGAGAAACAGAAGGAGAATTCAGGTTATTGGGAGGAAGAGATGGC 1944
Query 1918 GGTAGAAGCAGGTTGTTGGGTGTAGAGGATGAACATCCGAGCAAAGGAAGACGGGTTTCA 1977
|||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1945 GGTAGAAGCAGGCTATTGGGTGTGGAGGATGAACATCCGAGCAAAGGAAGACGGGTTTCG 2004
Query 1978 TTTAACATGGAACGTGTTAGTCATAGCATAGTAGAGCCTGGTGAAGCTTCTCTAGCTAGC 2037
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2005 TTTAACATGGAACGTGTTAGTCATAGCATAGTAGAGCCCGGTGAAGCTTCTCTAGCTAGC 2064
Query 2038 GTTTATGATGAAGATTACATTAACACGAGTGATGTTGAAAATGGAGATGATGAGGGTGCG 2097
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2065 ATTTATGATGAAGATTACAATAACACGAGTGATGTTGAAAATGGAGATGATGAGGGTGCA 2124
Query 2098 GATGATGAATGGGATAGGAGAGACACCGAAACCGAGATTGTTTGCAGACATATTGATCAT 2157
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2125 GATGATGAATGGGAAAGGAGAGATACCGAAACTGAGATTGTTTGCAGACATATTGATCAT 2184
Query 2158 GTGAATATGTTAGGTCTTAATAAAACCACAACAAGACTCAGGTTTCTGATTAACTGGCTT 2217
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 2185 GTGAATATGTTAGGTCTTAATAGAACCACAACGAGACTCAGGTTTCTGATTAACTGGCTA 2244
Query 2218 GTGATATCGTTACTGCAACTACAAGTGCCTGAATCAGGAGGCAGACACATGAACCTTGTG 2277
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 2245 GTGATATCGTTACTGCAACTACAAGTGCCTGAATCAGGAGGCAGAAACATGAATCTTGTG 2304
Query 2278 CAGATTTATGGGCCGAAGATCAAATACGAAAGAGGTGCCGCGGTTGCATTCAATGTGAGA 2337
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2305 CAGATTTATGGGCCGAAGATCAAATACGAAAGAGGAGCAGCGGTTGCATTCAATGTGAGA 2364
Query 2338 GATAAAAGCAAAGGCTTTGTTAGTCCAGAAATTGTTCAGAGACTCGGTGATAGAGAAGGT 2397
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 2365 GATAAAAGCAAAGGCTTTGTTAGTCCGGAAATTGTTCAGAGACTCGGTGAAAGAGAAGGT 2424
Query 2398 GTATCTCTCGGCATTGGTATATTGAGTCACATACGTATAGTGGATGAAAAACCAAGAAAC 2457
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2425 ATATCTCTCGGCATTGGTATATTGAGTCACATACGCATAGTGGATGATAAACCAAGAAAC 2484
Query 2458 CATAGAGCTCGGACTAAAGAAGATAGTGCTTTGCACTTGCAGAATGAAGCCGGGAAAAAT 2517
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2485 CATAGAGCTCGGACTAAAGAAGATAGTGCTTTGCACTTGCAGAATGAAGCCGGGAAAAAC 2544
Query 2518 GGGTTTATAAGATTTGAGGTTGTTACTGCTTCTCTTAGCTTCTTGACAAACTTTGAAGAT 2577
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2545 GGATTTATAAGATTTGAGGTTGTTACAGCTTCTCTTAGCTTCTTGACAAACTTTGAAGAT 2604
Query 2578 GTTTACAAGCTTTGGGTATTCGTCGCCAAGTTCCTAAACCCTGGTTTCAGCAGAGAAGGT 2637
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2605 GTTTACAAGCTTTGGGCATTCGTCGCCAAGTTCCTAACCCCTGGTTTCAGCAGAGAAGGT 2664
Query 2638 TCGCTTCCTACTGTTgaagaagaagaagaagaagcagagaaTTCAGAGACGTGA 2691
|||||||||||||| ||||||||||||| ||| | || |||||||||||||
Sbjct 2665 TCGCTTCCTACTGTCGAAGAAGAAGAAGCAGA-G--GA---TTCAGAGACGTGA 2712
> Ahg481220 jgi|Araly1|481220|fgenesh2_kg.4__280__AT2G23520.1
Length=2909
Score = 1604 bits (868), Expect = 0.0
Identities = 1735/2130 (81%), Gaps = 153/2130 (7%)
Strand=Plus/Plus
Query 1 ATGCA-TTTCTCTCTGTGGAAGCAAATTCATCACTGTGCTTCTCTGATCTTAGACAAGAG 59
||||| |||| || |||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1 ATGCATTTTC-CTTTGTGGAAGCAAATTCATCACTGTGCTACTCTGATCTTAGATAAGAG 59
Query 60 TAAGAGCAGCAGGAGAAGAAGAGATGGGTCTGATTCGTCTCTCAATGTCAAGAA-AAAAG 118
| | || || | | | ||||||||||| |||||||| | | |||| |||| |||||
Sbjct 60 T-A-AG-AGTA-G-G-AGAAGAGATGGTTCTGATTCACCAATTGATGT-TAGAAGAAAAG 112
Query 119 CTGCACTGATTCGGAAATTGTATGAAGATAAGCTCAGGGAAGCT-TTAGAAGAAGCTTCT 177
|| || || || |||||||||||||||||||||| || || ||| || |||||||| |||
Sbjct 113 CTTCAATGCTTAGGAAATTGTATGAAGATAAGCTTAGAGATGCTCTT-GAAGAAGCATCT 171
Query 178 GAGAATGGCTCACTCTTCAAATCCCAAGACA-TTGACCAAGATAATGGAGATGGA-AGCT 235
|||||||| | ||||| ||||| ||||| | |||| |||| ||| |||| || ||||
Sbjct 172 GAGAATGGGTTGCTCTTTAAATCTCAAGA-AGTTGAGAAAGAGAATCAAGAT-GAGAGCT 229
Query 236 TGGGTCGTTCCAGATCCTTAGCTAGACTT-CACGCGCAGCGTGAGTTTC-TACGCGCCAC 293
| |||||||| ||||| || ||||| || ||||| || |||||| ||| |||| || ||
Sbjct 230 TAGGTCGTTCTAGATCTTTGGCTAG-GTTACACGCTCAACGTGAG-TTCTTACGTGCTAC 287
Query 294 TGCTTTAGCAGCTGAACGTA-TTATCGAATCAGAAGACTCA-ATTCCTGAGCTCCGTGAA 351
||||||||| |||||||| | || | || || ||||| | | || |||||||| | ||||
Sbjct 288 TGCTTTAGCTGCTGAACGCACTT-TTGAGTCTGAAGA-TGACATACCTGAGCTTCTTGAA 345
Query 352 GCTTTGACCAAGTTTCTGAGCATGTACCCAAAGTATCAAG-CTTCTGAG-AAGATTGATC 409
||||| | |||||||| | ||||| ||||||| | || |||||||| ||| ||||||
Sbjct 346 GCTTTTAATAAGTTTCTTATTATGTATCCAAAGT-TTGAGACTTCTGAGAAAG-TTGATC 403
Query 410 AGTTAAGATCTGATGAGTATAGTCACTTATCATCATCAGCTTCTAAGGTATGTCTTGATT 469
|||| ||||||||||||||| ||||| | | | | | ||| ||||||||||||||||
Sbjct 404 AGTTGAGATCTGATGAGTATGGTCAC-T-T-GT--T-GGATTCAAAGGTATGTCTTGATT 457
Query 470 ACTGTGGATTTGGTCTCTTCTCTTATGTTCAGACTCTGCACTATTGGGATACTTGTACGT 529
||||||| ||||| || || || |||||||||||| |||| ||||||||| |||||||||
Sbjct 458 ACTGTGGCTTTGGGCTTTTTTCGTATGTTCAGACTTTGCATTATTGGGATTCTTGTACGT 517
Query 530 TTAGTCTCTCTGAGATAACTGCCAATTTGAGTAACCATGCGCTTTACGGTGGAGCTGAGA 589
||||| | |||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 518 TTAGTTTATCTGAGATTACTGCGAATTTGAGTAACCATGCGCTTTATGGTGGAGCTGAGA 577
Query 590 GTGGAACTGTGGAACATGATATTAAAACTAGGATTATGGACTAT-TTGAACATCCCTGAG 648
||||||||||||||||||| |||| |||||||| ||||| ||| || || || ||||||
Sbjct 578 TTGGAACTGTGGAACATGATCTTAAGACTAGGATAATGGATTATCTT-AATATACCTGAG 636
Query 649 AATGAGTATGGTCTTGTTTTCACAGTTAGTAGAGGCTCTGCTTTTAGATTG-TTAGCGGA 707
| ||||||||||||||||||||| | ||||||||||| || ||||| ||| || |||||
Sbjct 637 AGTGAGTATGGTCTTGTTTTCACTGGAAGTAGAGGCTCGGCGTTTAGGTTGCTT-GCGGA 695
Query 708 ATCTTATCCTTTTCAGT-CGAATAAGCGGCTTTTGACAATGTTTGATCACGAGAGCCAGT 766
||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 696 ATCTTATCCTTTTCA-TACGAATAAGCGGCTTTTGACAATGTTTGATCATGAGAGTCAGT 754
Query 767 CTGTGAATTGGATGGCGCAGACAGCGAGGGAGAAAGGCGC-AAAGGCTTATAATGCTTGG 825
|||||||||||||||| ||||| ||||| |||||||| || ||| |||||||| ||||||
Sbjct 755 CTGTGAATTGGATGGCTCAGACTGCGAGAGAGAAAGGTGCGAAA-GCTTATAACGCTTGG 813
Query 826 TTTAAATGGCCTACTTTGAAGCTTTGTTCGACTGATTTGAAGAAACGGTTGTCTTATAAG 885
||||||||||| ||||||||||| ||||| || ||||||||||| || |||||| |||||
Sbjct 814 TTTAAATGGCCAACTTTGAAGCTGTGTTCCACGGATTTGAAGAAGCGTTTGTCTCATAAG 873
Query 886 AAGAGGAAGAAGAAGGATTCCGCGGTTGGGTTGTTTGTGTTTCCTGCTCAGTCTCGTGTT 945
|||||||||||||||||||| |||||||| ||||||||||||||||| |||||| | |||
Sbjct 874 AAGAGGAAGAAGAAGGATTCTGCGGTTGGTTTGTTTGTGTTTCCTGCGCAGTCTAGGGTT 933
Query 946 ACGGGTACTAAGTATTCTTACCAGTGGATGGCT-TTAGCTCAGCAGAACCATTGGCATGT 1004
|||||| ||||||| |||||||||||||||||| || |||||||||||| | ||||||||
Sbjct 934 ACGGGTTCTAAGTACTCTTACCAGTGGATGGCTCTT-GCTCAGCAGAACAACTGGCATGT 992
Query 1005 GTTGCTTGATGCTGGTTCTTTAGGTCCCAAAGATATGGATTCGCTTGGTTTGTCATTGTT 1064
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 993 GTTGCTTGATGCTGGTTCTTTAGGTCCCAAAGATATGGATTCGCTCGGTTTATCGTTGTT 1052
Query 1065 CCGGCCTGAGTTTATCATTACCTCGTTCTACC-GTGTATTTGGTCATGACCCGACAGGAT 1123
|| || ||||||||||| |||||||||||| | || ||||| ||||| || ||||| |
Sbjct 1053 TCGACCAGAGTTTATCATCACCTCGTTCTACAAG-GTCTTTGGGCATGATCCTACAGGTT 1111
Query 1124 TTGGTTGCCTGTTGATTAAAAAATCAGTTATGGG-AAGCCTTCAGAGTCAATCAGGGAAA 1182
||||||| ||||||||||| || || || ||||| || | |||||||||| || ||||||
Sbjct 1112 TTGGTTGTCTGTTGATTAAGAAGTCGGTGATGGGTAATC-TTCAGAGTCAGTCCGGGAAA 1170
Query 1183 ACTGGATCAGGTATAGTGAAGATCACGCCTGAATATCCGTTATATCTCAGTGATTC-AGT 1241
|| ||||| || || ||||||||||| ||| ||||||| ||||||||||||||||| | |
Sbjct 1171 ACAGGATCGGGAATTGTGAAGATCACACCTCAATATCCATTATATCTCAGTGATTCGA-T 1229
Query 1242 AGATGGTCTTGACGGATTGGTTGGTTTTGAAGATCACAA--T-G--AC----G---ATAA 1289
||||||||| ||||||||||||||| |||||||||| | | | || | ||||
Sbjct 1230 AGATGGTCTGGACGGATTGGTTGGTCTTGAAGATCATGACGTTGGTACAAATGGTGATAA 1289
Query 1290 A--A-CCA--A-AGAAGCT-CATCGTCCAGGAACTCAGATGCCAGCT-TTCTCAGGTGCA 1341
| | ||| | ||| ||| | | || ||| |||||||||| | | ||||| ||||||
Sbjct 1290 ACCAGCCACCACAGAGGCTGC-TAGTAGAGGTGCTCAGATGCCGG-TATTCTCTGGTGCA 1347
Query 1342 TACACTTCAGCACAAGTGAGGGATGTGTTTGAAACAGAGCTCCTAGAAGATAACATATCT 1401
||||||||||| |||||||||||||||||||| ||||| ||| |||||||||| | ||
Sbjct 1348 TACACTTCAGCTCAAGTGAGGGATGTGTTTGAGACAGACCTCTTAGAAGATAA--TGCCT 1405
Query 1402 TCTGATAGAGATGGAACTACTAGCACCACAATTTTTGAAGAAACA-GAAAGTGTTTCGGT 1460
||||||||||||| |||| ||| |||| | ||| ||||||| | ||||||||||||||
Sbjct 1406 -CTGATAGAGATGGGACTAGTAGTACCATA-TTT--GAAGAAA-ATGAAAGTGTTTCGGT 1460
Query 1461 TGGAGAACTCATGAAAAGTCCGGTTTTTAGTGAAGATGAGTCATCCGACAATTCGTTTTG 1520
||||||||| |||||||| || | ||| ||||||||||||||||| || ||||| |||||
Sbjct 1461 TGGAGAACTGATGAAAAGCCCAGCTTTCAGTGAAGATGAGTCATCTGATAATTCCTTTTG 1520
Query 1521 GATTGATTTGGGTCAAAGTCCTCTTGGTTCTGA---T-CAG--CA-T--AA------TAA 1565
||| ||||||||||||||||| ||||| ||||| | | | || | || |||
Sbjct 1521 GATCGATTTGGGTCAAAGTCCGCTTGGGTCTGACCGTGCGGGTCACTTGAACCACCATAA 1580
Query 1566 GATTGCATCTCCACTGCCACCAATTTGGTTAACCAACAAGAGAAAACAGAAACAACGACA 1625
|| || |||||| ||||||| ||||||| |||| ||| | | | ||| ||
Sbjct 1581 AATCGCCTCTCCATTGCCACCGTTTTGGTTTACCAGCAA-A-----CGG---CAAT--CA 1629
Query 1626 GTCGCCTAAACCAATACCGAAGAGTTACAGCAGTCC-ATTGTATGATGGTAACGACGTCC 1684
| | ||||| || | ||||||||||||||||| || |||||||||||| || ||||
Sbjct 1630 --C-CA-AAACCGGTAGCAAAGAGTTACAGCAGTCCTAT-GTATGATGGTAAAGATGTCC 1684
Query 1685 TCTCGTTTGATGCTGCCGTTATGTCAGTTACAGAGCACGGGACAAACTCGACTCCATCGC 1744
|||||||||||||||| |||||||||||||| || | | |||||||| || ||||| |
Sbjct 1685 TCTCGTTTGATGCTGCAGTTATGTCAGTTACTCAGGA-G--ACAAACTCAACGCCATCAC 1741
Query 1745 GGAATAGGAGGAGCTCTAGTAACCATCTCCATGTTCAAGAGATACAGGAAGAAAACTGTG 1804
||||| ||||| ||||| ||| |||||| ||||||||||||||||||||||||| |
Sbjct 1742 GGAATCTGAGGAACTCTAATAA---TCTCCAAATTCAAGAGATACAGGAAGAAAACTGCG 1798
Query 1805 GT--CATAGCT-T-T-GCA-A--AT--GGCTT-G-A--AA-T--CT-----TCCAACATT 1842
|| ||| | | | | || | || || || | | || | || ||||| |||
Sbjct 1799 GTAACATTG-TGTATCGCGCAGGATCTGGTTTTGGATCAAATGGCTCAAGCTCCAAGATT 1857
Query 1843 TCATCAGAAATCAAAGAGAGTGCTATTAGACGAGAAACAGAAGGAGAATTCAGGTTATTG 1902
|| ||||| || ||||| | || |||||||||||||||||||| || || |||||||||
Sbjct 1858 TCTTCAGATATGAAAGATAACGCAATTAGACGAGAAACAGAAGGTGAGTTTAGGTTATTG 1917
Query 1903 GGAGGAAGAGATGGTGGTAGAAGCAGG-TTGTTGGGTGTAGAGGATGAACATCCGAGCAA 1961
||| |||| | | |||| | | ||| || |||||||| || |||||||| || ||||
Sbjct 1918 GGAAGAAGGGGTACTGGTGG--G-AGGCTT-TTGGGTGTGGAAGATGAACAACCAAGCAG 1973
Query 1962 AGGAAGACGGGTTTCATTTAACATGGAACGTGTTAGTCATAG-CATAGTAGAGCCT-GGT 2019
||||| |||||||||||||||||| || ||||| |||||||| | | | || || |||
Sbjct 1974 AGGAACACGGGTTTCATTTAACATTGACCGTGTCAGTCATAGTC-T-G--GA-CCAAGGT 2028
Query 2020 GAAGCTTCTCTAGCTAGCGTTTATGATGAA 2049
||||||||| | || || || ||||| |||
Sbjct 2029 GAAGCTTCTATGGCCAGTGTATATGACGAA 2058
Score = 433 bits (234), Expect = 4e-120
Identities = 486/599 (81%), Gaps = 51/599 (9%)
Strand=Plus/Plus
Query 2129 CCGAGATTGTTTGCAGACATATTGATCATGTGAATATGTTAGGTCTTAATAAAACCACAA 2188
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2105 CCGAGATTGTTTGCAGCCATATTGATCATGTGAATATGTTAGGTCTTAATAAAACCACAA 2164
Query 2189 CAAGACTCAGGTTTCTGATTAACTGGCTTGTGATATCGTTACTGCAACT-ACAAGTGCCT 2247
|| ||||| ||||||||||||||||||||||| || || || || || | ||||||||
Sbjct 2165 GTAGGCTCAGATTTCTGATTAACTGGCTTGTGATCTCTTTGCTACAGCTGA-AAGTGCCT 2223
Query 2248 GAATCAGG-AG-G-CAG-A-CA-CA--T----GAACCTTGTGCAGATTTATGGGCCGAAG 2295
||| |||| || | | | | || || | ||| ||||||||||||||||| || |||
Sbjct 2224 GAACCAGGCAGTGACGGTAGCAGCAGATATATGAATCTTGTGCAGATTTATGGCCCAAAG 2283
Query 2296 ATCAAA-TACGAAAGAGGTGCCGCGGTTGCATTCAATGTGAGAGATAAAAGCAAAGGCTT 2354
|| ||| ||||||||||| || |||||||| ||||| |||| ||| ||||||||||| ||
Sbjct 2284 AT-AAAGTACGAAAGAGGAGCAGCGGTTGCTTTCAACGTGAAAGACAAAAGCAAAGGGTT 2342
Query 2355 TGTTAGTCCAGAAATTGTTCAGAGACTCGG-TGATAGAGAAGGTGTATCTCTCGGCATTG 2413
||| ||||||||| |||||| || ||| || ||| ||||||||||||||||| || ||||
Sbjct 2343 TGTAAGTCCAGAAGTTGTTCTGAAACT-GGCTGAGAGAGAAGGTGTATCTCTTGGTATTG 2401
Query 2414 GTATATTGAGTCACATACGTATAGTGGATGAAAAACCAAGAAACCATAGAG----CTC-- 2467
|||| |||||||||||||| ||| ||||| || |||||||| | | | |
Sbjct 2402 GTATCTTGAGTCACATACGCATAATGGATCTT---CCGAGAAACCACCGCGGGGGCGCTA 2458
Query 2468 GGACTAAAG-AAGATAGTGCTTTGCA-CTTGCAGA-A-----TG--AAGC-CGG-G-AAA 2514
||| | ||| |||||||| ||||||| || ||||| | || |||| ||| | |||
Sbjct 2459 GGA-TCAAGGAAGATAGTTCTTTGCATCT-GCAGAGAGAAGCTGGTAAGCGCGGTGGAAA 2516
Query 2515 AA-TGGGTTTATAAGATTTGAGGTTGTTACTGCTTCTCTTAGCTTCTTGACAAACTTTGA 2573
|| ||||||| | ||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct 2517 AAATGGGTTTGTGCGATTTGAGGTTGTCACAGCTTCTCTCAGCTTTTTGACAAACTTTGA 2576
Query 2574 AGATGTTTACAAGCTTTGGG-TATTCGTCGCCAAGTTCCTAAACCCTGGTTTCAGCAGAG 2632
|||||||| ||||| |||| | || |||||||||||| ||||||| ||||||||||| |
Sbjct 2577 GGATGTTTATAAGCTATGGGCTTTT-GTCGCCAAGTTCTTAAACCCCGGTTTCAGCAGGG 2635
Query 2633 AAGGTTCGCTTCCTACTGTTgaagaagaagaagaagaagcagagaaTTCAGAGACGTGA 2691
|||| ||||| || ||||| || |||||||||| || | ||| |||||||||||||
Sbjct 2636 AAGGATCGCTCCCGACTGT--AATT-GAAGAAGAAGCAG-A-AGA-TTCAGAGACGTGA 2688
> Ahg496904 jgi|Araly1|496904|fgenesh2_kg.8__2720__AT5G66950.1
Length=3225
Score = 645 bits (349), Expect = 0.0
Identities = 1118/1475 (76%), Gaps = 109/1475 (7%)
Strand=Plus/Plus
Query 130 CGGAAATTGTATGAAGATAAGCTCAGGGAAGCTTTAGAAGAAGCTTCTG-AGAATGGCTC 188
|||||| | ||||| |||||||||||||||| | ||| |||| |||| || |||| |
Sbjct 517 CGGAAACTCCATGAATCTAAGCTCAGGGAAGCTCTCGAACAAGCATCTGAAG-ATGGGTT 575
Query 189 ACTC-TTCAAATCCCAAGACATTGACCAAG-ATA--A---TGGAGATGGAAG-CTTGGGT 240
|||| || ||||| |||||||| || ||| | | | | |||| ||| ||| ||
Sbjct 576 ACTCGTT-AAATCTCAAGACATGGAAGAAGAAGACGAGTCTCAAGATCAAAGTCTT-GGA 633
Query 241 CGTTCCAGATC-CTTAGCTAGACTTC-ACGCGCAGCGTGAGTTTC-TACGCGCCAC-TGC 296
|| || ||||| | | ||||||| || |||| || || ||| ||| | || || || | |
Sbjct 634 CGGTCTAGATCAC-TCGCTAGAC-TCAACGCTCAACGAGAG-TTCTTGCGTGCTACAT-C 689
Query 297 TTTAGCAG-CTGAA-CGTATTATCGAATCAGAAGACTCAATT-CCTGAGCTCCG-TGAAG 352
| |||| | || | ||| | ||||||||||| | || |||||||| | ||||
Sbjct 690 ACTCGCAGCCCAAAGAGCATT-T-GAATCAGAAGAAAC-TTTACCTGAGCT-TGAAGAAG 745
Query 353 CT-TTGACCAAGTTTCTGAGCATGTACCCAAAGTATCAAGCTTCTGAG-AAGATTGATCA 410
|| |||| || |||||||| |||||| |||||||||||| |||||||| ||| ||||| |
Sbjct 746 CTCTTGA-CATGTTTCTGACCATGTATCCAAAGTATCAATCTTCTGAGAAAG-TTGATGA 803
Query 411 GTT-AAGATCTGATGAGTATAGT-CACTTATCATCATCAGCTTCTAAGGTATGTCTTGAT 468
|| | || | ||||||||| | |||||||| | | | | | ||||||||||||||
Sbjct 804 ATTGAGGAAC-GATGAGTAT-TTCCACTTATCGT--T-A-C--CAAAGGTATGTCTTGAC 855
Query 469 TACTGTGGATTT-GGTCTCTTCTCTTATGTTCAGACTCTGCACTATTGGGATACTTGTAC 527
|| ||||||||| ||| | ||||| ||| |||| || | || || ||||| ||||| ||
Sbjct 856 TATTGTGGATTTGGGT-TGTTCTCGTATCTTCAAACAGTTCATTACTGGGACACTTGCAC 914
Query 528 GTTTAGTCTCTCTGAGATAACTGCCAATTTGAGTAACCATGCGCTTTACGGTGGAGCTGA 587
|||||| | || ||||| | ||||||| | || || ||||| | |||||||| |||||
Sbjct 915 TTTTAGTTTGTCGGAGATTAGTGCCAATCTAAGCAATCATGCTATATACGGTGGTGCTGA 974
Query 588 GAGTGGAACTGTGGAACATGATATTAAAACTAGGATTATGGACTATTTGAACATCCCTGA 647
|| ||| || | ||||||||||| || | |||||| ||||| || ||||||||||||||
Sbjct 975 GAAAGGATCTATTGAACATGATATCAAGATTAGGATAATGGATTACTTGAACATCCCTGA 1034
Query 648 GAATGAGTATGGTCTTGTTTTCACAGTTAGTAGAGGCTCTGC-TTTTAGATTG-TTAGCG 705
|||||||||||||||||| ||||| ||||||||||| ||||| || || ||| || ||
Sbjct 1035 GAATGAGTATGGTCTTGTGTTCACTGTTAGTAGAGGTTCTGCGTTCAAG-TTGCTT-GCA 1092
Query 706 GAATCTTATCCTTTTCAGTCGAATAAGCGGCTTTTGACAATGTTTGATCACGAGAGCCAG 765
|| |||||||| || || | || ||| |||| |||| |||||||||||||||||||||
Sbjct 1093 GAGTCTTATCCATTCCACACAAACAAGAAGCTTCTGACTATGTTTGATCACGAGAGCCAG 1152
Query 766 TCTGTGAATTGGATGGCG-CAGACAGCGAGGGAGAAAGGCGCAAAGGCTT-ATAATGCTT 823
|| || | |||||||| | ||| |||| ||||||||| ||||| | || || || |
Sbjct 1153 TCGGTTAGTTGGATGG-GTCAGTGTGCGAAGGAGAAAGGGGCAAAAG-TTGGTAGCGCCT 1210
Query 824 GGTTTAAATGGCCTAC-TTTGAAGCTTTGTTCGACT-GAT-TTGAAGAAACGGTTG-TCT 879
||||||| ||||| || || | ||| ||||| | | ||| || ||| || || | | |
Sbjct 1211 GGTTTAAGTGGCCCACACTT-AGGCTGTGTTC-AATGGATCTT-AAG-AA-GG-AGATTT 1264
Query 880 T-A-TAAGAAGAGGAAGAAGAAGGATTCCGCGGTTGGGTTGTTTGTGTTTCCTGCT-CAG 936
| | |||||||| || |||||||||||| || ||| |||||||||||||| | | ||
Sbjct 1265 TGAGTAAGAAGAAGAGGAAGAAGGATTCTGCAACTGGTTTGTTTGTGTTTCCAG-TCCAA 1323
Query 937 TCTCGTGTTAC-GGGTACTAAGTATTCTTACCAGTGGATGGCTTTAGCTCAGCAGAACCA 995
|| | || || |||| ||||||||||||||||||||||||| || |||||||| ||| |
Sbjct 1324 TCAAGGGTCACGGGGT-CTAAGTATTCTTACCAGTGGATGGCATTGGCTCAGCAAAACAA 1382
Query 996 TTGGCATGTGTTGCTTGATGCTGGTTCTTTAGGTCCCAAAGATATGGATTCGCTTGGTTT 1055
|||||||| |||||||| |||||| |||| ||||||||||| ||||| |||||||| ||
Sbjct 1383 CTGGCATGTCTTGCTTGACGCTGGTGCTTTGGGTCCCAAAGACATGGACTCGCTTGGGTT 1442
Query 1056 GTCATTGTTCCGGCCTGAGTTTATCATTACCTCGTTCTACCGTGTATTTGG-TCATGACC 1114
||| ||||| || || || |||||||| || ||||| || ||||| ||||| | |||| |
Sbjct 1443 GTCTTTGTTTCGACCCGATTTTATCATCACTTCGTTTTATCGTGTGTTTGGGT-ATGATC 1501
Query 1115 CGACAGGATTTGGTTGCCTGTTGATTAAAAAATCAGTTATGGGAAGCCTT-CAGAGTCAA 1173
| || |||||||| || ||||||||||| ||||| || || | || || |||||||||
Sbjct 1502 CAACTGGATTTGGGTGTCTGTTGATTAAGAAATCTGTGATTAGCTGC-TTGCAGAGTCAA 1560
Query 1174 TCAGGGAAAACTG-GATCAGGTATAGTGAAGATCACGCCTGAATATCCGT-TATATCTCA 1231
|| |||||||| | | || || || |||||||| || ||||| ||||| | | ||||| |
Sbjct 1561 TCTGGGAAAAC-GAGTTCGGGAATTGTGAAGATAACACCTGAGTATCC-TCTGTATCTAA 1618
Query 1232 GTGATTC-AGTAGATGGTCTTG-ACGGATTGGTTGGTTTTGAAGATCAC-A-AT-GACGA 1286
|||| || | | ||||| |||| | || ||| ||| || ||||| | | || | | |
Sbjct 1619 GTGACTCCA-TGGATGG-CTTGGAAGGTTTGACTGGGATTCAAGATAATGATATTG-CTA 1675
Query 1287 TAAAACCAAAGAAGCTCATCGTCCA-GG-AACTCAGATG-CCAGCTTTCTCAGGTGCATA 1343
| || | | || | | | || || |||||| || || ||||| || ||||||||
Sbjct 1676 TTAATGGAGATAA--TAAA-G-CCTTGGGAACTCA-ATTACCCGCTTTTTCCGGTGCATA 1730
Query 1344 CACTTCAGCACAAGTG-AGGGATGTGTTTGAAACAGAGCTCCTAGAAGAT-AACATATC- 1400
||||| || || ||| ||| |||| ||||| ||||| | | || || || || |
Sbjct 1731 TACTTCTGCTCAGGTGCAGG-ATGTCTTTGAGACAGA--TA-TGGATCATGAA-AT-TGG 1784
Query 1401 TTCTGATAGAGATGGAACTACTAGCACCACAATTTTTGAAGAAACAGAAAGTGTTTCGGT 1460
||||||||||||| ||| || || | || | ||||| ||||| || ||| | || ||
Sbjct 1785 TTCTGATAGAGAT--AAC-AC-AGG-C-ACTGTGTTTGAGGAAACTGAGAGTATCTCAGT 1838
Query 1461 TGGAGAACTCATGAAAAGTCCGGTTTTTAGTGAAGATGAGTCATCCGACAATTCGTTTTG 1520
|| ||| | || |||||||||||||| || ||||| |||||||| || | ||| | ||
Sbjct 1839 GGGTGAATTGATTAAAAGTCCGGTTTTCAGCGAAGACGAGTCATCGGATAGCTCGCTCTG 1898
Query 1521 GATTGATTTGGGTCAAAGTCCT-CTTGGTTCTGAT 1554
||||||||||||||| |||||| || | |||||||
Sbjct 1899 GATTGATTTGGGTCAGAGTCCTGCT-GATTCTGAT 1932
Score = 97.1 bits (52), Expect = 6e-19
Identities = 88/104 (85%), Gaps = 7/104 (7%)
Strand=Plus/Plus
Query 2511 GAAA-AATGGGTTT-ATAAGATTTGAGGTTGTTACTGCTTCTCTTAGCTTCTTGACAAAC 2568
|||| ||| ||||| |||||| |||||||||| || ||||||||| | ||||||||||||
Sbjct 2852 GAAACAAT-GGTTTCATAAGAGTTGAGGTTGTCACAGCTTCTCTTGGGTTCTTGACAAAC 2910
Query 2569 TTTGAAGATGTTTACAAGCTT-TGGGTATT-CGTCGCCAAGTTC 2610
|||||||||||||||| | || ||| ||| ||| || ||||||
Sbjct 2911 TTTGAAGATGTTTACA-GATTATGGA-ATTTCGTGGCTAAGTTC 2952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101510502925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5