BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37110.1 Length=1551 Score E Sequences producing significant alignments: (Bits) Value Ahg490927 jgi|Araly1|490927|fgenesh2_kg.7__360__AT4G37110.1 1301 0.0 > Ahg490927 jgi|Araly1|490927|fgenesh2_kg.7__360__AT4G37110.1 Length=1560 Score = 1301 bits (704), Expect = 0.0 Identities = 870/949 (92%), Gaps = 16/949 (2%) Strand=Plus/Plus Query 22 AGAGAAAGAGGGAAAGATTGGAACTTTGAATCCAAAATCAGTTCATCAATCTCTCACAAT 81 ||||| |||||||||| || |||||||||| |||||||||||||||||| ||||||||| Sbjct 1 AGAGAGAGAGGGAAAGGTTAGAACTTTGAAACCAAAATCAGTTCATCAA--TCTCACAAT 58 Query 82 GCCTGTGGTGAGAACGAGAGCGAAATGTTCGATTCCCGTCACAAACCCTAATCCAACAGT 141 ||||| | ||||||||||||| ||||||||||||||| || ||||||||||||||||||| Sbjct 59 GCCTGCGTTGAGAACGAGAGCCAAATGTTCGATTCCCATCTCAAACCCTAATCCAACAGT 118 Query 142 CGGAGGAGGAAACTCAAACGTCTCGATCTACGAGAAATGCAGAGAAGACAGGATCAAGGA 201 | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 C---GGAGGAAACCCAAACGTCTCGATCTACGAGAAATGCAGAGAAGACAGGATCAAGGA 175 Query 202 GAATCTTCAGAGGATGAAGAATCTCGGAATCATGGATCTCTCTCTCAAACTCAAATCCGA 261 |||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| Sbjct 176 GAATCTTCAGAGGATGCAGAATCTCGGAATCTTCGATCTCTCTCTCAAACTCAAATCCGA 235 Query 262 GATCCGACCCGCCAAAAGGCGTTACGGTAACTCTAATGCC-AATCCGGGTCGAGAAA-CA 319 |||||||||||||||||||||||| ||||||||||| || ||||| | | | ||| | Sbjct 236 TATCCGACCCGCCAAAAGGCGTTACTGTAACTCTAAT-CCGAATCCAGATTG-TAAATCG 293 Query 320 TCTCCTATTCAGCTTTCCGTCTCCTCTAGACGATCCTCAAGATTGAAGCAGGAGCCGCCA 379 ||||| ||||||| ||||||||| | ||| |||||||||||||||||||||| ||||| Sbjct 294 CCTCCTCTTCAGCTCTCCGTCTCCACCAGAAGATCCTCAAGATTGAAGCAGGAACCGCCG 353 Query 380 GTTTCTCGGAGATCCTCGAGATTGAAGAACGCTACACCAGTTTCCTACGCAGAGGAACCT 439 ||| |||||||||||||||| ||||||||||| || ||||||||||| |||||||||||| Sbjct 354 GTTACTCGGAGATCCTCGAGGTTGAAGAACGCAACGCCAGTTTCCTATGCAGAGGAACCT 413 Query 440 GAACTGAAGAAGGGTAAAGTGTCTAAAGAAGAGATTGTTTTGTGGGTAGGAGAAGGCGTA 499 | | |||||||||||||| ||||||||||| ||||||||||||||||||||||||| | Sbjct 414 G-A--GAAGAAGGGTAAAGCATCTAAAGAAGATATTGTTTTGTGGGTAGGAGAAGGCGCA 470 Query 500 AGGCCAGAGATTTACACTGAGGAGCATGAGAAACTGTTAGGTAACACAGAACGAACTTGG 559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 AGGCCAGAGATTTACACTGAGGAGCATGAGAAACTGTTAGGTAACACAGAACGAACTTGG 530 Query 560 GAGCTTTTTGTTGATGGTTGTGACAAAAATGGGAAACGGATTTATGACCCTGTTAGAGGA 619 ||||| ||||| |||||| |||||| ||||||||||||||||||| |||||||||||| Sbjct 531 GAGCTATTTGTCCATGGTTACGACAAAGATGGGAAACGGATTTATGATCCTGTTAGAGGA 590 Query 620 AAGTGTTGCCACCAGTGCAGGCAGAAGACGCTAGGTTATCATACCCAATGCAGCCAGTGT 679 ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 591 AAGACTTGCCACCAGTGCAGGCAGAAGACGCTCGGTTATCATACCCAATGCAGCCAGTGT 650 Query 680 AACCATTCTGTTCGAGGTCAATTCTGTGGAGATTGTTTATACATGAGATATGGAGAACAT 739 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 651 AACCCTTCGGTTCGAGGTCAATTCTGTGGAGATTGTTTATACATGAGATATGGAGAACAT 710 Query 740 GTTCTTGAAGCTCTGGAAAATCCGGACTGGATTTGTCCAGTCTGTCGCGATATCTGCAAC 799 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 711 GTTCTTGAATCTCTGGAAAATCCGGACTGGATTTGTCCAGTCTGTCGTGATATCTGCAAC 770 Query 800 TGCAGTTTCTGTCGTACaaaa-aaaGGGTGGCTCCCAACTGGTGCAGCTTACAGGAAGAT 858 |||||||| ||||||| || | |||||||||||||||||||| |||||||||||||||| Sbjct 771 TGCAGTTTATGTCGTA-AAGACAAAGGGTGGCTCCCAACTGGCCCAGCTTACAGGAAGAT 829 Query 859 ACATAAACTCGGGTATAAGTCTGTTGCACATTATCTGATTCAAACCAACCAA-CAGTCAG 917 || |||||||||||| ||||||||||||||||||||||||||||||||| || ||||| | Sbjct 830 ACTTAAACTCGGGTACAAGTCTGTTGCACATTATCTGATTCAAACCAAC-AAGCAGTCGG 888 Query 918 AAACAAGTGAGGATGATGAAACTGATGCTCCTGCAGATAGTCAAGCTTC 966 ||||||||||||||| ||||||||| | | ||||| ||||||||||||| Sbjct 889 AAACAAGTGAGGATGGTGAAACTGAAGGTGCTGCAAATAGTCAAGCTTC 937 Score = 636 bits (344), Expect = 0.0 Identities = 529/610 (87%), Gaps = 46/610 (8%) Strand=Plus/Plus Query 963 CTTCAGAAGGAGATCATCTCCTTCTCATAACTGATGGGATTCAGGACAATCAAATTGACG 1022 ||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 976 CTTCAGAAGAAGATCATCTCCTTCTCTTAACTGATGGGATTCAGGACAATCACATTGACG 1035 Query 1023 AAAATCTCGATGATGATGATGGCTCAAACAAGAATCCGGATTCAGCTAGAAAGTCATTAT 1082 | |||||| ||||| |||||| |||| ||||||||||||||||||||||| |||||| Sbjct 1036 AGAATCTC---GATGACGATGGCACAAATAAGAATCCGGATTCAGCTAGAAAATCATTAA 1092 Query 1083 GCTTCTTGTCGTCTGGGAACAACCAAACTTCAGTGAC---T-G--A-----T-GGTGATC 1130 ||||||| || |||||| ||||||||||||||||||| | | | | |||||| Sbjct 1093 GCTTCTTCTCTTCTGGGGACAACCAAACTTCAGTGACTGATGGTCATGTTCTAGGTGATG 1152 Query 1131 TCAAGCCATTAGATGTGAAAGAGGTGGATCCAGCAACTCCTGTGATCATCGATCTTGAGG 1190 ||||||||||||||||||| ||| ||||| | | | |||| |||||| |||||||||| Sbjct 1153 TCAAGCCATTAGATGTGAACGAGATGGAT-C--C-A--CCTGCGATCATTGATCTTGAGG 1206 Query 1191 CTCAGTGCAGTGAAACTGAGAGGATGGCTAACTCTGCAAACAAAGAGAACCGAGAAACAA 1250 |||||||| |||| |||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1207 CTCAGTGCTGTGAGACTGAGAGAAGGGCTAACTCTGCAAACAAAGAGAACCGAGAAACAA 1266 Query 1251 GAAGCAAGCGAAAGATGTCTGCTGAACCAAACCCAAATAGTATTGGTGGAAGACTGAGAC 1310 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1267 GAAGCAAGCGAAAGATGTCTCCTGAACCAAACCCAAATAGTATTGGTGGAAGACTGAGAC 1326 Query 1311 AGCGTCGTAAGATTCAAGCTTGAGTGAGAGAA-GAAGTTTCAGAAGA----GAA---A-C 1361 ||||||||||||||||||||||| |||||||| |||||||||||||| ||| | | Sbjct 1327 AGCGTCGTAAGATTCAAGCTTGAATGAGAGAAAGAAGTTTCAGAAGACTATGAATGGAAC 1386 Query 1362 TATGCTTTTGCTGCATGTACGTACTCTAAGGCTAAACAAATGGAAGATCttttttttctt 1421 | |||||||||||| ||||| | ||| | |||||| |||||||||| ||||| ||| | Sbjct 1387 TCTGCTTTTGCTGCCTGTAC-T-CTC-A-GGCTAATCAAATGGAAGCTCTTTGTTT-C-- 1439 Query 1422 ttccatttttCTATCGGAGTAGGCATGGATCATGTAAGAACTTGACGGCTTTTCAAATTT 1481 | |||| | |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1440 --C--TTTT-C----GGAGTAGGCATGGATCATGTAAGAACTTGACGGCTTGTCAAATTT 1490 Query 1482 TGTGTTTTGTTGCTGTTGGTGATCTGATGTAATGGATTCCAGTTGAACGGTTAAAGAATT 1541 ||||||||||||||||| |||||||||||||||||| | ||||| |||||||| ||||| Sbjct 1491 TGTGTTTTGTTGCTGTTACTGATCTGATGTAATGGATGCTAGTTGCACGGTTAATGAATT 1550 Query 1542 TGCCTAAACC 1551 |||||||||| Sbjct 1551 TGCCTAAACC 1560 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58087623625 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5