BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37110.1
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490927 jgi|Araly1|490927|fgenesh2_kg.7__360__AT4G37110.1 1301 0.0
> Ahg490927 jgi|Araly1|490927|fgenesh2_kg.7__360__AT4G37110.1
Length=1560
Score = 1301 bits (704), Expect = 0.0
Identities = 870/949 (92%), Gaps = 16/949 (2%)
Strand=Plus/Plus
Query 22 AGAGAAAGAGGGAAAGATTGGAACTTTGAATCCAAAATCAGTTCATCAATCTCTCACAAT 81
||||| |||||||||| || |||||||||| |||||||||||||||||| |||||||||
Sbjct 1 AGAGAGAGAGGGAAAGGTTAGAACTTTGAAACCAAAATCAGTTCATCAA--TCTCACAAT 58
Query 82 GCCTGTGGTGAGAACGAGAGCGAAATGTTCGATTCCCGTCACAAACCCTAATCCAACAGT 141
||||| | ||||||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct 59 GCCTGCGTTGAGAACGAGAGCCAAATGTTCGATTCCCATCTCAAACCCTAATCCAACAGT 118
Query 142 CGGAGGAGGAAACTCAAACGTCTCGATCTACGAGAAATGCAGAGAAGACAGGATCAAGGA 201
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 C---GGAGGAAACCCAAACGTCTCGATCTACGAGAAATGCAGAGAAGACAGGATCAAGGA 175
Query 202 GAATCTTCAGAGGATGAAGAATCTCGGAATCATGGATCTCTCTCTCAAACTCAAATCCGA 261
|||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 176 GAATCTTCAGAGGATGCAGAATCTCGGAATCTTCGATCTCTCTCTCAAACTCAAATCCGA 235
Query 262 GATCCGACCCGCCAAAAGGCGTTACGGTAACTCTAATGCC-AATCCGGGTCGAGAAA-CA 319
|||||||||||||||||||||||| ||||||||||| || ||||| | | | ||| |
Sbjct 236 TATCCGACCCGCCAAAAGGCGTTACTGTAACTCTAAT-CCGAATCCAGATTG-TAAATCG 293
Query 320 TCTCCTATTCAGCTTTCCGTCTCCTCTAGACGATCCTCAAGATTGAAGCAGGAGCCGCCA 379
||||| ||||||| ||||||||| | ||| |||||||||||||||||||||| |||||
Sbjct 294 CCTCCTCTTCAGCTCTCCGTCTCCACCAGAAGATCCTCAAGATTGAAGCAGGAACCGCCG 353
Query 380 GTTTCTCGGAGATCCTCGAGATTGAAGAACGCTACACCAGTTTCCTACGCAGAGGAACCT 439
||| |||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||
Sbjct 354 GTTACTCGGAGATCCTCGAGGTTGAAGAACGCAACGCCAGTTTCCTATGCAGAGGAACCT 413
Query 440 GAACTGAAGAAGGGTAAAGTGTCTAAAGAAGAGATTGTTTTGTGGGTAGGAGAAGGCGTA 499
| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 414 G-A--GAAGAAGGGTAAAGCATCTAAAGAAGATATTGTTTTGTGGGTAGGAGAAGGCGCA 470
Query 500 AGGCCAGAGATTTACACTGAGGAGCATGAGAAACTGTTAGGTAACACAGAACGAACTTGG 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AGGCCAGAGATTTACACTGAGGAGCATGAGAAACTGTTAGGTAACACAGAACGAACTTGG 530
Query 560 GAGCTTTTTGTTGATGGTTGTGACAAAAATGGGAAACGGATTTATGACCCTGTTAGAGGA 619
||||| ||||| |||||| |||||| ||||||||||||||||||| ||||||||||||
Sbjct 531 GAGCTATTTGTCCATGGTTACGACAAAGATGGGAAACGGATTTATGATCCTGTTAGAGGA 590
Query 620 AAGTGTTGCCACCAGTGCAGGCAGAAGACGCTAGGTTATCATACCCAATGCAGCCAGTGT 679
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 591 AAGACTTGCCACCAGTGCAGGCAGAAGACGCTCGGTTATCATACCCAATGCAGCCAGTGT 650
Query 680 AACCATTCTGTTCGAGGTCAATTCTGTGGAGATTGTTTATACATGAGATATGGAGAACAT 739
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AACCCTTCGGTTCGAGGTCAATTCTGTGGAGATTGTTTATACATGAGATATGGAGAACAT 710
Query 740 GTTCTTGAAGCTCTGGAAAATCCGGACTGGATTTGTCCAGTCTGTCGCGATATCTGCAAC 799
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 711 GTTCTTGAATCTCTGGAAAATCCGGACTGGATTTGTCCAGTCTGTCGTGATATCTGCAAC 770
Query 800 TGCAGTTTCTGTCGTACaaaa-aaaGGGTGGCTCCCAACTGGTGCAGCTTACAGGAAGAT 858
|||||||| ||||||| || | |||||||||||||||||||| ||||||||||||||||
Sbjct 771 TGCAGTTTATGTCGTA-AAGACAAAGGGTGGCTCCCAACTGGCCCAGCTTACAGGAAGAT 829
Query 859 ACATAAACTCGGGTATAAGTCTGTTGCACATTATCTGATTCAAACCAACCAA-CAGTCAG 917
|| |||||||||||| ||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 830 ACTTAAACTCGGGTACAAGTCTGTTGCACATTATCTGATTCAAACCAAC-AAGCAGTCGG 888
Query 918 AAACAAGTGAGGATGATGAAACTGATGCTCCTGCAGATAGTCAAGCTTC 966
||||||||||||||| ||||||||| | | ||||| |||||||||||||
Sbjct 889 AAACAAGTGAGGATGGTGAAACTGAAGGTGCTGCAAATAGTCAAGCTTC 937
Score = 636 bits (344), Expect = 0.0
Identities = 529/610 (87%), Gaps = 46/610 (8%)
Strand=Plus/Plus
Query 963 CTTCAGAAGGAGATCATCTCCTTCTCATAACTGATGGGATTCAGGACAATCAAATTGACG 1022
||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 976 CTTCAGAAGAAGATCATCTCCTTCTCTTAACTGATGGGATTCAGGACAATCACATTGACG 1035
Query 1023 AAAATCTCGATGATGATGATGGCTCAAACAAGAATCCGGATTCAGCTAGAAAGTCATTAT 1082
| |||||| ||||| |||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 1036 AGAATCTC---GATGACGATGGCACAAATAAGAATCCGGATTCAGCTAGAAAATCATTAA 1092
Query 1083 GCTTCTTGTCGTCTGGGAACAACCAAACTTCAGTGAC---T-G--A-----T-GGTGATC 1130
||||||| || |||||| ||||||||||||||||||| | | | | ||||||
Sbjct 1093 GCTTCTTCTCTTCTGGGGACAACCAAACTTCAGTGACTGATGGTCATGTTCTAGGTGATG 1152
Query 1131 TCAAGCCATTAGATGTGAAAGAGGTGGATCCAGCAACTCCTGTGATCATCGATCTTGAGG 1190
||||||||||||||||||| ||| ||||| | | | |||| |||||| ||||||||||
Sbjct 1153 TCAAGCCATTAGATGTGAACGAGATGGAT-C--C-A--CCTGCGATCATTGATCTTGAGG 1206
Query 1191 CTCAGTGCAGTGAAACTGAGAGGATGGCTAACTCTGCAAACAAAGAGAACCGAGAAACAA 1250
|||||||| |||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1207 CTCAGTGCTGTGAGACTGAGAGAAGGGCTAACTCTGCAAACAAAGAGAACCGAGAAACAA 1266
Query 1251 GAAGCAAGCGAAAGATGTCTGCTGAACCAAACCCAAATAGTATTGGTGGAAGACTGAGAC 1310
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1267 GAAGCAAGCGAAAGATGTCTCCTGAACCAAACCCAAATAGTATTGGTGGAAGACTGAGAC 1326
Query 1311 AGCGTCGTAAGATTCAAGCTTGAGTGAGAGAA-GAAGTTTCAGAAGA----GAA---A-C 1361
||||||||||||||||||||||| |||||||| |||||||||||||| ||| | |
Sbjct 1327 AGCGTCGTAAGATTCAAGCTTGAATGAGAGAAAGAAGTTTCAGAAGACTATGAATGGAAC 1386
Query 1362 TATGCTTTTGCTGCATGTACGTACTCTAAGGCTAAACAAATGGAAGATCttttttttctt 1421
| |||||||||||| ||||| | ||| | |||||| |||||||||| ||||| ||| |
Sbjct 1387 TCTGCTTTTGCTGCCTGTAC-T-CTC-A-GGCTAATCAAATGGAAGCTCTTTGTTT-C-- 1439
Query 1422 ttccatttttCTATCGGAGTAGGCATGGATCATGTAAGAACTTGACGGCTTTTCAAATTT 1481
| |||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1440 --C--TTTT-C----GGAGTAGGCATGGATCATGTAAGAACTTGACGGCTTGTCAAATTT 1490
Query 1482 TGTGTTTTGTTGCTGTTGGTGATCTGATGTAATGGATTCCAGTTGAACGGTTAAAGAATT 1541
||||||||||||||||| |||||||||||||||||| | ||||| |||||||| |||||
Sbjct 1491 TGTGTTTTGTTGCTGTTACTGATCTGATGTAATGGATGCTAGTTGCACGGTTAATGAATT 1550
Query 1542 TGCCTAAACC 1551
||||||||||
Sbjct 1551 TGCCTAAACC 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58087623625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5