BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37120.1
Length=1814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490928 jgi|Araly1|490928|fgenesh2_kg.7__361__AT4G37120.1 2687 0.0
Ahg475672 jgi|Araly1|475672|fgenesh2_kg.2__802__AT4G37120.1 2050 0.0
Ahg937284 jgi|Araly1|937284|scaffold_501475.1 599 2e-170
> Ahg490928 jgi|Araly1|490928|fgenesh2_kg.7__361__AT4G37120.1
Length=1796
Score = 2687 bits (1455), Expect = 0.0
Identities = 1698/1813 (94%), Gaps = 26/1813 (1%)
Strand=Plus/Plus
Query 10 GAAGCTTAACGATCGTAACAATCATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAG 69
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAGCTTAACGATCGTAATAATCATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAG 60
Query 70 ATCACAGGAAGAAATTAGAATTAGAGGAAGCTCGTAAAGCTGGTCTCGCTCCTGCTGAGG 129
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 ATCATAGGAAGAAATTAGAATTAGAGGAAGCTCGTAAAGCTGGTCTTGCTCCTGCTGAGG 120
Query 130 TAGACGAAGATGGCAAAGAAATCAATCCTCACATACCTGAGTATATGTCAAAAGCTCCAT 189
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGATGAGGATGGCAAAGAAATCAATCCTCACATACCTGAGTATATGTCAAAAGCTCCAT 180
Query 190 GGTATCTCAAGTCTGAACAGCCGAGTTTGAAGCATCaaaaaaaTTGGAAAATTGAACCCG 249
|||||||||| |||||| | |||||||||||||||||||| |||||||||| ||||||||
Sbjct 181 GGTATCTCAACTCTGAAAAACCGAGTTTGAAGCATCAAAAGAATTGGAAAACTGAACCCG 240
Query 250 AACCCAAAAAGATATGGTATGATAGAGGTAAAAAGATCTATCAAGCTGAACAATACCGCA 309
||| |||||| |||||||||||||||||| ||||||| ||||||| ||| |||||||||
Sbjct 241 AACTCAAAAAAATATGGTATGATAGAGGTGCAAAGATCCATCAAGCCGAAAAATACCGCA 300
Query 310 AGGGAGCGTGTATAAACTGTGGTGCAATGACTCACAGTTCTAAAGCATGTATGGATAGAC 369
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 AGGGAGCGTGTATAAACTGTGGTGCAATGACGCACAGTTCTAAAGCATGTATGGATAGAC 360
Query 370 CTCGTAAGATTGGAGCTAAATACACAAACATGAACATTGCTGCTGATGAGAAAATCGAGA 429
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 CTCGTAAGATTGGAGCTAAATACACAAACATGAACATTGCAGCTGATGAGAAAATCGAGA 420
Query 430 GTTTTGAACTTGACTATGATGGGAAGAGGGACAGATGGAACGGTTATGATACTTCAACCT 489
|||||||||||||||||||||| ||||| ||||||||||| ||||||||| ||||| |||
Sbjct 421 GTTTTGAACTTGACTATGATGGCAAGAGAGACAGATGGAATGGTTATGATCCTTCATCCT 480
Query 490 ACCGTCATGTGGTAGATCGTTATGATGCTAAAGAGGAGGCACGAAAGAAGTATCTCAAGG 549
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 481 ACCGTCATGTGGTAGATCGTTATGATGCAAAAGAGGAGGCACGAAAGAAGTATCTCAAGG 540
Query 550 AGCAGCAACTTAAGAAACTAGAGGAGAAGAACAATAATGAAAACGGTGATGATGCAACCA 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGCAGCAACTTAAGAAACTAGAGGAGAAGAACAATAATGAAAACGGTGATGATGCAACCA 600
Query 610 GTGATGGGGAGGAAGACCTTGACGACTTGAGGGTCGATGAAGCTAAGGTTGATGAGAGTA 669
|||||||||||||| || ||||||||| |||||||||||||| |||||||||||||| |
Sbjct 601 GTGATGGGGAGGAATACAATGACGACTTAAGGGTCGATGAAGCCAAGGTTGATGAGAGCA 660
Query 670 GGCAAATGGATTTTGCAAAGGTTGAGAAACGTGTTCGAACAACTGGTGGTGGTAGCACAG 729
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 661 GGCAGATGGATTTTGCAAAGGTTGAAAAACGTGTTCGAACAACTGGTGGTGGTAGCACAG 720
Query 730 GAACTGTTAGGAATCTGCGTATCAGAGAAGACACTGCTAAATACCTGTTGAATCTTGATG 789
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 721 GAACTGTTAGGAATCTGCGTATCAGAGAAGACACTGCAAAATACCTGTTGAATCTTGATG 780
Query 790 TAAACTCAGCTCATTATGACCCTAAAACTCGGTCCATGCGTGAAGATCCACTTCCAGATG 849
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 781 TCAACTCAGCTCATTATGACCCGAAAACTCGATCCATGCGTGAAGATCCACTTCCAGATG 840
Query 850 CAGATCCAAATGAAAAATTCTATTTGGGAGATAATCAATATAGAAACAGTGGCCAAGCTC 909
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CAGATCCAAATGAAAAATTCTATTTGGGAGATAATCAATATAGAAACAGTGGCCAAGCTT 900
Query 910 TGGAGTTCAAACAGATAAACATCCATTCATGTGAAGCATTTGACAAGGGACATGACATGC 969
|||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 901 TGGAGTTCAAACAGCTAAACGTCCATTCATGTGAAGCATTTGACAAGGGACAGGACATGC 960
Query 970 ATATGCAAGCGGCTCCATCCCAAGCTGAATTGCTCTATAAGAACTTTAAAGTTGCAAAGG 1029
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATATGCAAGCGGCTCCTTCCCAAGCTGAATTGCTCTATAAGAACTTTAAAGTTGCAAAGG 1020
Query 1030 AAAAACTGAAAA-CTCAGACAAAGGACACCATTATGGAAAAGTATGGGAATGCAGCTAC- 1087
||||||| |||| |||||||||| ||||| || ||||||||||| ||||||||||||||
Sbjct 1021 AAAAACT-AAAATCTCAGACAAAAGACACAATCATGGAAAAGTACGGGAATGCAGCTACC 1079
Query 1088 AGAAGGTGAAATTCCGATGGAGCTTTTGCTTGGCCAAAGTGAAAGACAAATTGAGTATGA 1147
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1080 A-AAGGTGAAATTCCGATGGAGCTTTTGCTTGGCCAAAGTGAAAGACAAGTTGAGTATGA 1138
Query 1148 CAGGGCAGGGAGGATTATGAAGGGACAGGAGGTGATAATTCCAAAGAGCAAATATGAAGA 1207
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CAGGGCAGGCAGGATTATAAAGGGACAGGAGGTGATAATTCCAAAGAGCAAATATGAAGA 1198
Query 1208 AGATGTTCATGCTAACAATCACACAAGTGTTTGGGGATCATGGTGGAAAGATCACCAATG 1267
|||||||||||| ||||||||||||||||||||||| |||||||||||||| || || ||
Sbjct 1199 AGATGTTCATGCCAACAATCACACAAGTGTTTGGGGTTCATGGTGGAAAGACCATCAGTG 1258
Query 1268 GGGATATAAATGTTGCCAGCAGACAATTCGCAACAGCTATTGCACAGGTTCTGCTGGAAT 1327
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1259 GGGATATAAATGCTGCCAGCAGACCATTCGCAACAGCTACTGCACAGGTTCTGCTGGAAT 1318
Query 1328 TGAAGCTGCAGAGGCGTCCATTGATCTGATGAAGGCTAATATTGCTCGCAAAGAAGCTTC 1387
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TGAAGCTGCAGAGGCGTCCCTTGATCTGATGAAGGCTAATATTGCTCGCAAAGAAGCTTC 1378
Query 1388 TAAAGAGAGTCCGAAGAAGGTTGAAGAGAAGAAAATGGCGACATGGGGAACTGATATTCC 1447
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1379 TAAAGAGAGTCCGAAGAAGGTTGAAGAGAAGAGAATGGCGACATGGGGAACCGATATTCC 1438
Query 1448 TGAAGATTTGGAATTGAACGAGGAGGCACTTGCAAATGCTCTTAAAAAGGAGGATCTAAG 1507
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1439 TGAAGATTTGGAATTGAACGAGGAGGCTCTTGCCAATGCTCTTAAAAAGGAGGATCTAAG 1498
Query 1508 TAGGAGGGAAGAAAAAGATGAGAGGAAACGCAAATACAATGTCAATTACACCAACGATGT 1567
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1499 TAAGAGGGAAGAAAAAGATGAGAGGAAACGCAAATACAATGTCAAATACACCAACGATGT 1558
Query 1568 GACCTCCGAGGAGATGGAAGCTTACAGAATGAAGAGAGTTCACCACGAGGACCCAATGAG 1627
||| || || || ||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 1559 GACTTCGGAAGATATGGAAGCTTATAGAATGAAGAGAGTTCACCATGAGGATCCAATGA- 1617
Query 1628 AA-ATTTCCCCGGCTGAT--AAATGTCTTTTCCCTTTCACCATATTAAGCTGAAGAAACC 1684
|| |||||| |||||||| ||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1618 AAGATTTCCTCGGCTGATTTAAAC-TCTTT-CCCTTTCACCATATTAACCTGAAGAAACC 1675
Query 1685 TTGTTTTTAAGTTTCATGTCTTTAAATAAGAC-CCTTG-TTATTCATGTCATTATTTGTT 1742
|| ||||| | | |||||||||||||| |||| |||||||| ||||||||||||
Sbjct 1676 TTATTTTTTA-----A-GTCTTTAAATAAGAGACCTTTCTTATTCATATCATTATTTGTT 1729
Query 1743 ACTGTCTTCATG-TCCACCCAAAGATTCATTAT-ATAACGTATGAAACTAGAATAAATTT 1800
| ||||||| | | || | |||| ||| | ||| ||||||||||||||||| ||
Sbjct 1730 A--GTCTTCAAGATTCATT-AT-GATT--TTAACAAAACTTATGAAACTAGAATAAAATT 1783
Query 1801 TCTTAGCCAAATC 1813
|||||||||||||
Sbjct 1784 TCTTAGCCAAATC 1796
> Ahg475672 jgi|Araly1|475672|fgenesh2_kg.2__802__AT4G37120.1
Length=1636
Score = 2050 bits (1110), Expect = 0.0
Identities = 1476/1651 (89%), Gaps = 31/1651 (2%)
Strand=Plus/Plus
Query 8 TCGAAGCTTAACGATCGTAACAATCATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGA 67
||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 2 TCGAAGCTTCACGATCGT-ATAATCATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGA 60
Query 68 AGATCACAGGAAG-AAATTAGAATTAGAGGAAGCTCGTAAAGCTGGTCTCGCTCCTGCTG 126
|||||| |||||| ||| | ||||||||||||||||||||||| || || ||||| ||||
Sbjct 61 AGATCATAGGAAGCAAA-TCGAATTAGAGGAAGCTCGTAAAGCCGGGCTTGCTCCAGCTG 119
Query 127 AGGTAGACGAAGATGGCAAA-GAAATCAATCCTCACATACCTG-AGTATATGTCAAAAGC 184
|||| || || ||||| ||| |||||||||||||| || || | ||||||||||| ||
Sbjct 120 AGGTTGATGAGGATGG-AAAGGAAATCAATCCTCATAT-CCCGCAGTATATGTCATCTGC 177
Query 185 TCCATGGTATCTCAAGTCTGAACAGCCGAGTTTGAAGCATCaaa-aaaaTTGGAAAATTG 243
|||||||||||| || |||||| | ||||||||||||||||||| ||| ||||| | ||
Sbjct 178 TCCATGGTATCTTAATTCTGAAAAACCGAGTTTGAAGCATCAAAGGAAA-TGGAAGAGTG 236
Query 244 AACCCGAA-CCCAAAAAGAT-ATGGTATGATAGAGGTAAAAAGATCTATCAAGCTGAACA 301
| || || || ||| | ||||||||| |||||| |||||||| |||||||||| |
Sbjct 237 -ATCCTAATTACACTAAG-TCATGGTATGACAGAGGTGCAAAGATCTTTCAAGCTGAAAA 294
Query 302 ATACCGCAAGGGAGCGTGT-ATAAACTGTGGTGCAATGACTCACAGTTCTAAAGCATGTA 360
|||||| |||||||||||| | |||||||||||||||||| || | | ||||||| ||||
Sbjct 295 ATACCGAAAGGGAGCGTGTCA-AAACTGTGGTGCAATGACGCATACTGCTAAAGCTTGTA 353
Query 361 TGGATAGACCTCGTAAGATTGGAGCTAAA-TACACAAACATGAACATTGCTGCTGATGAG 419
||||||| ||||||||| |||| || ||| |||||||||| ||||||||| ||||||||
Sbjct 354 TGGATAGGCCTCGTAAGGTTGGGGC-AAAGTACACAAACAAGAACATTGCACCTGATGAG 412
Query 420 AAAATCGAGAGTTTTGAACTTGACTATGATGGGAAGAGGGACAGATGGAACGGTTATGAT 479
||||| ||||||||||| |||||||| ||||| ||||| ||| ||||||| |||||||||
Sbjct 413 AAAATTGAGAGTTTTGAGCTTGACTACGATGGCAAGAGAGACCGATGGAATGGTTATGAT 472
Query 480 ACTTCAACCTACCGTCATGTGGTAGATCGTTATGATGCTAAAGAGGAGGCACGAAAGAAG 539
|||||||||||| || |||| |||||| |||||| || |||||||| || |||||||||
Sbjct 473 CCTTCAACCTACCATCGTGTGATAGATCTTTATGAAGCAAAAGAGGATGCTCGAAAGAAG 532
Query 540 TATC-TCAAGGAGCAGCAACTTAAGAAACTAGAGGAGAAGAACAATAATGAAAACGGTGA 598
|| | | ||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct 533 TA-CTTGAAGGAGCAGCAACTTAAGAAACTGGAGGAAAAGAACAATAACGAAAAAGGTGA 591
Query 599 TGATGCAACCAGTGATGGGGAGGAAGACCTTGACGACTTGAGGGTCGATGAAGCTAAGGT 658
||| ||||||||||||||||||||||| || ||||| ||||| |||||||| |||||
Sbjct 592 TGAGGCAACCAGTGATGGGGAGGAAGAAGAAGATGACTTAAGGGTTGATGAAGCCAAGGT 651
Query 659 TGATGAGAGTAGGCAAATGGATTTTGCAAAGGTTGAGAAA-CGTGTTCGAACAACTGGTG 717
||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 652 TGATGAGAGCAGGCAGATGGATTTTGCAAAGGTTGA-AAAGCGTGTTCGAACAACTGGTG 710
Query 718 GTGGTAGCACAGGAACTGTTAGGAATCTGCGTATCAGAGAAGACACTGCTAAATACCTGT 777
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 711 GTGGTAGCACAGGAACTGTTAGGAATCTGCGTATCAGAGAAGACACTGCAAAATACCTGT 770
Query 778 TGAATCTTGATGTAAACTCAGCTCATTATGACCCTAAAACTCGGTCCATGCGTGAAGATC 837
|||| || ||||| ||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 771 TGAACCTCGATGTCAACTCAGCTCATTATGACCCTAAAACTCGTTCTATGCGTGAAGACC 830
Query 838 CACTTCCAGATGCAGATCCAAATGAAAAATTCTATTTGGGAGATAATCAATATAGAAACA 897
| ||||||||||||||||||||||| || || ||| ||||||||||||||||||||||||
Sbjct 831 CGCTTCCAGATGCAGATCCAAATGACAAGTTTTATCTGGGAGATAATCAATATAGAAACA 890
Query 898 GTGGCCAAGCTCTGGAGTTCAAACAGATAAACATCCATTCATGTGAAGCATTTGACAAGG 957
||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||||
Sbjct 891 GTGGCCAAGCTTTGGAGTTCAAACAGCTAAACATCCATTCGTGGGAAGCATTTGACAAGG 950
Query 958 GACATGACATGCATATGCAAGCGGCTCCATCCCAAGCTGAATTGCTCTATAAGAACTTTA 1017
|||| ||||||||||||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 951 GACAGGACATGCATATGCAAGCGGCTCCCTCTCAAGCTGAATTGCTCTATAAGAGCTTTC 1010
Query 1018 AAGTTGCAAAGGAAAAACTGAAAACTCAGACAAAGGACACCATTATGGAAAAGTATGGGA 1077
| ||||| ||||| ||||||||| |||||||||||||||| || ||||| ||||| ||||
Sbjct 1011 AGGTTGCGAAGGAGAAACTGAAATCTCAGACAAAGGACACAATCATGGACAAGTACGGGA 1070
Query 1078 ATGCAGCTACAGAAGGTGAAATTCCGATGGAGCTTTTGCTTGGCCAAAGTGAAAGACAAA 1137
||||||||||||||| ||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 1071 ATGCAGCTACAGAAGATGAAATTCCAATGGAGCTTTTGCTTGGGCAAAGCGAAAGACAAG 1130
Query 1138 TTGAGTATGA-CAGGGCAGGGAGGATTATGAAGGGACAGGAGGTGATAATT-CCAAAGAG 1195
|||||||||| | | |||||||||||||| |||||||||||||||||| || ||||||||
Sbjct 1131 TTGAGTATGATC-GAGCAGGGAGGATTATAAAGGGACAGGAGGTGATA-TTGCCAAAGAG 1188
Query 1196 CAAATATGAAGAAGATGTTCATGCTAACAATCACACAAGTGTTTGGGGATCATGGTGGAA 1255
||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||
Sbjct 1189 TAAATATGAAGAAGATGTTCATGCTAACAATCACACTAGTGTGTGGGGCTCATATTGGAA 1248
Query 1256 AGATCACCAATGGGGATATAAATGTTGCCAGCAGA-CAATTCGCAACAGCTATTGCACAG 1314
|||||| |||||||||||||||||||||||||||| || ||||||| || || |||||||
Sbjct 1249 AGATCATCAATGGGGATATAAATGTTGCCAGCAGATCA-TTCGCAATAGTTACTGCACAG 1307
Query 1315 GTTCTGCTGGAATTGAAGCTGCAGAGGC-GTCCATTGATCTGATGAAGGCTAATATTGCT 1373
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 1308 GTTCTGCTGGAATTGAAGCTGCAGAGGCTGCCC-TTGATCTGATGAAGGCTAATATTGCT 1366
Query 1374 CGCAAAGAAGCTTCTAAAGAGAGTCCGAAGAAGGTTGAAGAGAAGAAAATGGCGACATGG 1433
||||||||||| ||| ||||||| || ||||||||||||||||||| |||||| |||||
Sbjct 1367 CGCAAAGAAGCATCTGAAGAGAGCCCAAAGAAGGTTGAAGAGAAGAGAATGGCCTCATGG 1426
Query 1434 GGAACTGATATTCCTGAAGATTTGGAATTGAACGAGGAGGCACTTGCAAATGCTCTTAAA 1493
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1427 GGAACTGATATTCCTGAAGATTTGGAATTGAACGAGGAGGCTCTTGCTAATGCTCTTAAA 1486
Query 1494 AAGGAGGATCTAAGTAGGAGGGAAGAAAAAGATGAGAGGAAACGCAAATACAATGTCAAT 1553
||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1487 AAGGAGGATCTCAGTAGGAAGGAAGAAAAAGATGAGAGGAAACGTAAATACAATGTCAAA 1546
Query 1554 TACACCAACGATGTGACCTCCG-AGGAGATGGAAGCTTACAGAATGAAGAGAGTTCACCA 1612
|||| |||||||||||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 1547 TACAACAACGATGTGAC-TCCGGAAGAGATGGAAGCTTACAGAATGAAGAGAGTTCACCA 1605
Query 1613 CGAGGACCCAATGAGAAATTTCCCCGGCTGA 1643
||||| ||||||||| |||||| |||||||
Sbjct 1606 TGAGGATCCAATGAGAGATTTCCTCGGCTGA 1636
> Ahg937284 jgi|Araly1|937284|scaffold_501475.1
Length=1148
Score = 599 bits (324), Expect = 2e-170
Identities = 460/525 (88%), Gaps = 12/525 (2%)
Strand=Plus/Plus
Query 653 TAA-GGTTGATGAGAGTAGGCAAATGGATTTTGCAAAGGTTGAGAAACGTGTTCGAACAA 711
||| |||||||||||| | ||| ||||||||||||||||| | |||||||| |||||||
Sbjct 598 TAAGGGTTGATGAGAGCAAGCAGGTGGATTTTGCAAAGGTTAAAAAACGTGTACGAACAA 657
Query 712 CTGGTGGTGGTAGCACAGGAACTGTTAGGAATCTGCGTATCAGAGAAGACACTGCTAAAT 771
||| |||||| |||||||||||||| |||||||||||||| |||||||| ||||| ||||
Sbjct 658 CTGATGGTGGAAGCACAGGAACTGTAAGGAATCTGCGTATTAGAGAAGATACTGCAAAAT 717
Query 772 ACCTGTTGAATCTTGATGTAAACTCAGCTCATTATGACCCTAAAACTCGGTCCATGCGTG 831
|| ||||||| |||||||| ||||||||| |||||||||||||| |||| ||||||||||
Sbjct 718 ACTTGTTGAACCTTGATGTTAACTCAGCTTATTATGACCCTAAATCTCGATCCATGCGTG 777
Query 832 AAGATCCACTTCCAGATGCAGATCCAAATGAAAAATTCTATTTGGGAGATAATCAATATA 891
||||||| || ||||||||| |||||||||| ||||| | ||||||||||||||||||||
Sbjct 778 AAGATCCGCTCCCAGATGCAAATCCAAATGAGAAATTTTGTTTGGGAGATAATCAATATA 837
Query 892 GAAACAGTGGCCAAGCTCTGGAGTTCAAACAGA-TAAACATCCATTCATGTGAAGCATTT 950
||||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||
Sbjct 838 GAAACAGTGGCCAAGCTCTAGAGTTCAAACA-ACTAAACATGTATTCATGTGAAGCATTT 896
Query 951 GACAAGGGACATGACATGCATATGCAAGCGGCTCCATCCCAAGCTGAATTGCTCT-ATAA 1009
| ||| ||||| ||||| |||||||||||||||||||| |||||||| ||| | | ||||
Sbjct 897 GGCAAAGGACAAGACATACATATGCAAGCGGCTCCATCTCAAGCTGAGTTG-TGTTATAA 955
Query 1010 GAACTTTAAAGTTGCAAAGGAAAAACTGAA-AACTCAGACAAAGGACACCATTATGGAAA 1068
|| |||| ||| |||||||||||||||| || ||||| ||| ||||| || |||| ||
Sbjct 956 GAGGGTTAAGGTTACAAAGGAAAAACTGAATAA-TCAGATAAAAGACACAATCATGGCAA 1014
Query 1069 AGTATGGGAATGCAGCTACAGAAGGTGAAATTCCGATGGAGCTTTTGCTTGGCCAAAGTG 1128
||||||||||||||||| || ||| ||| ||||||||||||||||||||||| ||||| |
Sbjct 1015 AGTATGGGAATGCAGCTGCAAAAGATGATATTCCGATGGAGCTTTTGCTTGGGCAAAGCG 1074
Query 1129 AAAGACAAATTGAGTATGA-C-AG--GGCAGGGAGGATTATGAAG 1169
|||||||| |||||||||| | || |||||| |||||||| |||
Sbjct 1075 AAAGACAAGTTGAGTATGATCGAGCAGGCAGG-AGGATTATAAAG 1118
Score = 486 bits (263), Expect = 2e-136
Identities = 460/553 (83%), Gaps = 22/553 (4%)
Strand=Plus/Plus
Query 33 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCACAGGAAG-AAATTAGAATT 91
|||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||
Sbjct 21 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCGTAGGAAGCAAAA-AGAATT 79
Query 92 AGAGGAAGCTCGTAAAGCTGGTCTCGCTCCTGCTGAGGTAGACGAAGA-TGGCAAAG-AA 149
||| |||||| | ||||| || || | ||| |||||||||||||| || ||| |||| ||
Sbjct 80 AGACGAAGCTAGAAAAGCCGGGCTTGTTCCGGCTGAGGTAGACGA-GAATGG-AAAGGAA 137
Query 150 ATCAATCCTCACATACCTGAGTATATGTCAAAAGCTCCATGGTAT-CTCAAGTCTGAACA 208
||||||||||||||| || ||||| ||| | |||||| ||| | |||||||||| |
Sbjct 138 ATCAATCCTCACATAGCTAAGTATTTGTTATCTCCTCCATTCTATGC-CAAGTCTGAAAA 196
Query 209 GCCGAGTTTGAAGCATCaaaaaaaTTGGAAAATTGAACCCGAACCCA-AAAAG-ATATGG 266
|||||||||||||||||||| |||||||||| | |||||| ||| ||||| ||||
Sbjct 197 ACCGAGTTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCACAAAAGCATAT-- 254
Query 267 TATGATAGAGGTAAAAAGATCT-ATCAAGCTGAACAATACCGCAAGGGAGCGTGT-ATAA 324
||||| |||||| ||||| || ||||||| ||| |||| ||||| ||||||||| | ||
Sbjct 255 TATGACAGAGGTGCAAAGA-CTTATCAAGCCGAAAAATATCGCAAAGGAGCGTGTCA-AA 312
Query 325 ACTGTGGTGCAATGACTCACAGTTCT-AAAGCATGTATGGATAGACCTCGTAAGATTGGA 383
|||||||||||||||| || | | | ||| ||||||| || |||||||||||| ||||
Sbjct 313 ACTGTGGTGCAATGACACAT-GATATGAAAACATGTATAGAAAGACCTCGTAAGGTTGGT 371
Query 384 GCTAAATACACAAACATGAACATTGCTGCTGATGAGAAAATCGAGAGTTTTGAACTTGAC 443
|| ||||||||||||| ||||||||| ||||||||||||| |||||| ||||| ||||
Sbjct 372 GCAAAATACACAAACAAGAACATTGCACCTGATGAGAAAATTGAGAGTCTTGAATTTGAT 431
Query 444 TATGATGGGAAGAGGGACAGATGGAACGGTTATGATACTTCAACCTACCGTCATGTG-GT 502
|||||||| ||||| ||| ||||||| ||||||||| |||| | || ||||||||| |
Sbjct 432 TATGATGGTAAGAGAGACCGATGGAATGGTTATGATCCTTCGTCTTATCGTCATGTGAG- 490
Query 503 AGATCGTTATGATGCTAAAGAGGAGGCACGAAAGAAGTATCTC-AAGGAGCAGCAACTTA 561
||||| |||||| || |||||| | |||||| |||| || || |||||||| |||||||
Sbjct 491 AGATCTTTATGAAGCAAAAGAGAATGCACGAGAGAATTA-CTTGAAGGAGCAACAACTTA 549
Query 562 AGAAACTAGAGGA 574
|||||||||||||
Sbjct 550 AGAAACTAGAGGA 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68105358060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5