BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37130.1
Length=1879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490930 jgi|Araly1|490930|fgenesh2_kg.7__363__AT4G37130.1 2490 0.0
> Ahg490930 jgi|Araly1|490930|fgenesh2_kg.7__363__AT4G37130.1
Length=1764
Score = 2490 bits (1348), Expect = 0.0
Identities = 1563/1662 (94%), Gaps = 34/1662 (2%)
Strand=Plus/Plus
Query 14 GGGGCTTTTGAAtttttttGCTCAACTTCCAAATCGTCGCCGGCGATAGAAACCCTAGAT 73
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 GGGGCTTTTGAATTTTTTTGCTCAACTTCCAAATCGTCGCCGGCGATATAAACCCTAGAT 60
Query 74 TTGATTCTCCGTCGGTTATATCCAGCAATGTCGTTTTTTCCCCCACAGCAACAACAGACG 133
||||||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 61 TTGATTCGCCGCCGGTTATATCCAGCAATGTCGTTGTTGACCCCACAGCAACAACAGACG 120
Query 134 CCTCAGCCGCTGTTTCAAACTCAGCAAACGTCGTTGTTTCAGCCGCAGCAAACCAATTCC 193
||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 121 CCTCAGCCGCTTTTTCAAACTCAGCAA-CA--GTTGTTTCAGCCGCAGCAAACCAATTCC 177
Query 194 ATCTTCTCGCAATCGCAGCCGCAGCAAACCAATTCCATCTTCTCGCAATCGCAACCACAG 253
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 178 CTCTTCTCCCAATCGCAACCGCAGCAAACCAATTCCATCTTCTCGCAATCGCAACCGCAG 237
Query 254 CAAACCAATTCCATCTTCTCGCAACCgcagcaacaacagcaaacgtcgttgtttcagccg 313
|| | || | | | | || | | | || | |||| | ||| |||| |
Sbjct 238 CAG-C-AA--C-AGCAAC-CGT--C-GTTGTTTCAGCCGCAA-CA--GTTC---CAGCAG 282
Query 314 caacagttccagcagcagcagcaacagctaaatcagcaacagcagcagcaagtacaacaa 373
|| | | ||||||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 283 CA---G--C-AGCAGCA--A-CAACA---AAATCAGCAACAGCAGCAGCAAGTACAACAA 330
Query 374 cagTTGTATTTGTTCACCAACGATAAAGCTCCGGCGAATTACAGTACTAAGTGGGCCGAT 433
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 331 CAGTTGTATTTGTTCACCAACGATAAAGCTCCGGCGAATTACAGTACCAAATGGGCCGAT 390
Query 434 CTTCATCCCGATTCTCAGAAACTCTTGCTTCAGATTGAAGAGAAGATATTGGAGCATAGA 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 CTTCATCCCGATTCTCAGAAACTCTTGCTTCAGATTGAAGAGAAGATATTGGAGCATAGA 450
Query 494 AGTGAAAGTCAGAGATTAGATCAGTGTAGTCGACTTTATGATTCTTCTGTATCCAGTGAA 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 AGTGAAAGTCAGAGATTAGATCAGTGTAGTCGACTTTATGATTCTTCTGTATCCAGTGAA 510
Query 554 GGGTTTGAGTTTGATGCTAGCCGCATTGTTCAGGAGCTTGGTGGAATTAATACTGCCATG 613
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 511 GGGTTTGAGTTTGATGCTAGCCGCATTGTTCAGGAGCTTGGTGGGATTAATACTGCCATG 570
Query 614 GACCGACAAAAAGCTGTTTTGCATGAGCTTATGATTGTTGCCAAAGATATGCTGCGTAAT 673
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 571 GACCGACAAAAAGCTGTTCTCCATGAGCTTATGATTGTTGCCAAAGATATGCTGCGTAAT 630
Query 674 GCGGAGATTGCAGTTCGGTCTTTTATGATGCTACAGCCAAGATTTCCTCATTGGAAACAA 733
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GCAGAGATTGCAGTTCGGTCTTTTATGATGCTACAGCCAAGATTTCCTCATTGGAAACAA 690
Query 734 GGAGGAGGAGTTGTTAGTGTTGGTTCTCAACCATCTCAGGGGCAAGGAACTAATCCAGCT 793
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 691 GGAGGAGGAGTTGTTAGTGTTGGTTCTCAACCATCTCAGGGGCAGGGAACAAATCCAGCT 750
Query 794 CCAGCTTCTTCTGGTCAACAACAAGCTGTTACTACAACAGTTCAAGTTTCTGATTTTTAC 853
|||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 751 CCAGCTTCCTCTGGTCAACAACAAGCAGTTACTACGACCGTTCAAGTTTCTGATTTTTAC 810
Query 854 CGTGGGATTCCGAAGAAACCAACAGCTTTTCTACTGCAGACAGTTGTAAGGTTTGAGAAG 913
||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||
Sbjct 811 CGTGGGATTCCAAAGAAACCGACAGCTTTTCTACTGCAAACAGTTGGAAGGTTTGAGAAG 870
Query 914 TATCTTAACGAGTGTCGTCAATGGGTTGAAGAGCTGGAGCAATTGCTCGCCTTGGATTCT 973
||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 TATCTAAATGAGTGCCGCCAATGGGTTGAAGAGCTGGAGCAATTGCTCGCCTTGGATTCT 930
Query 974 GACAAGTATAGTCGACATGCTTCTCTTTTAGAATCTCTTCCGAAAGTCATGTCTAATGTT 1033
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 931 GACAAGTATAGTCGACATGCTTCCCTTTTAGAATCTCTTCCAAAAGTCATGTCTAATGTT 990
Query 1034 CATGACTTCTTTGTTCATGTGGCTGCTAAGGTAGAGAGTATTCACCAATATATTGAATCA 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 CATGACTTCTTTGTTCATGTGGCTGCTAAGGTAGAGAGTATTCACCAATATATTGAATCA 1050
Query 1094 ATGAGAACATCGTATCTTGCTGACCAGCGCCGAAGAGGAGAATGCCATGATCCGTTTCTT 1153
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1051 ATGAGAACATCGTATCTTGCTGACCAGCGCCGAAGAGGAGGATGCCATGATCCGTTTCTT 1110
Query 1154 GAGGCTGATCGAAGGGAGACAGCAAAGCAGGAAGCAGCTGCTAAAAGGGTCCACCCAACT 1213
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1111 GAGGCTGATCGAAGGGAGACAGCAAAGCAGGAAGCAGCTGCTAAAAGAGTCCACCCAACT 1170
Query 1214 CTGCATCTTCCTGCTTCTACTACAAGTACACAACCCTCAACACAGGTTGCTGGGTTGATT 1273
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 CTGCATCTTCCTGCGTCTACTACAAGTACACAACCCTCAACACAGGTTGCTGGGTTGATT 1230
Query 1274 GCCAGCTCAGCTACTCCTGGGGGTTCAAATCCTCCACAGACATCTGTTCCAACATCAAAC 1333
||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1231 GCCAGCTCAGCCACTCCCGGGGCTTCAAATCCTCCACAGACATCTGTTCCAACATCAAAC 1290
Query 1334 CCTTCTTCAGGAGCTGGTTTTTCGTTTCTCAACACACCTGCTTCTGGACCTTCGTCTTCT 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 CCTTCTTCAGGAGCTGGTTTTTCGTTTCTCAACACACCTGCTTCTGGACCTTCGTCTTCT 1350
Query 1394 CTCTTTGCTACACCATCTTCTACTGCTCCTACCTCGTCTTTGTTTGGACCATCCCCGACT 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1351 ATCTTTGCTACACCATCTTCTACTGCTCCTACCTCGTCTTTGTTTGGACCATCCTCTACT 1410
Query 1454 CCCACACAGACGCCACTTTTTGGGTCTTCCCCGGCTTCTACATTTGGTTCTACTCAATCT 1513
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1411 CCCGCACAGACGCCACTTTTTGGGTCTTCCCCGGCTTCTACATTTGGTTCCGCTCAATCT 1470
Query 1514 TTGTTTGGCCAGACAACTCCATCACTTACTATGCCTTCAC-AGTTTGGAGGTGCTACACC 1572
||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 1471 TTGTTTGGCCAGACAACTCCATCACTTGCTATGCCTTCACCA-TTTGGAGGTGCTACACC 1529
Query 1573 AGGATCAGGAGCCAGCTTTGGTTCTATGACAAAATCTTCAAGGCCAAAATCTCGAACTAC 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 AGGATCAGGAGCCAGCTTTGGTTCTATGACAAAATCTTCAAGGCCAAAATCTCGAACTAC 1589
Query 1633 ACGCCGTTAGACAT-GGGATATCTCAAGTTTCATCCCTCAGC 1673
||||||||||||| ||| |||| |||||||||||| |||||
Sbjct 1590 ACGCCGTTAGACACAGGG-TATCCCAAGTTTCATCCATCAGC 1630
Score = 191 bits (103), Expect = 2e-47
Identities = 132/145 (91%), Gaps = 5/145 (3%)
Strand=Plus/Plus
Query 1702 CATC-GCATCGTGTACATGGCTTGAGTTCATCGTCTTCAGTTGGTGAAGTCGACTTCGGT 1760
|||| ||||||| ||||||||| |||||||||| ||| ||||||||||||| || |||
Sbjct 1624 CATCAGCATCGTTTACATGGCTGGAGTTCATCG---TCACTTGGTGAAGTCGAGTTTGGT 1680
Query 1761 GCAAGTTCGAAGCAGATCCGTATTCTCTTATGCACCAGTTTGTATTTGTGGCGTTATTCA 1820
||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1681 GCAAG-TCGAAGCAGATCCGCATTCTCTGATGCACCAGTTTGTATTTGTGGCGTTATTCA 1739
Query 1821 TTGAATTGATGATTGAATGTTCTTA 1845
||||||| |||||||||||||||||
Sbjct 1740 TTGAATTAATGATTGAATGTTCTTA 1764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581223985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5