BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G37140.1

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944170 jgi|Araly1|944170|scaffold_700399.1                        664    0.0  


> Ahg944170 jgi|Araly1|944170|scaffold_700399.1
Length=827

 Score =  664 bits (359),  Expect = 0.0
 Identities = 456/498 (92%), Gaps = 26/498 (5%)
 Strand=Plus/Plus

Query  1    ATGAAACATTATGTTCTTGTTCACGGCGGTTGCCACGGCGCATGGTGCTGGTACAAGGTC  60
            |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  21   ATGAAACATTATGTGCTCGTTCACGGCGGTTGCCACGGCGCATGGTGCTGGTACAAGGTC  80

Query  61   AAACCGGTGCTGGAAGCTTCAGGCCACCGTGTAACCGTTGTTGATCTTACGGCTTCTGGT  120
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  81   AAACCGGTGCTGGAAGCTTCAGGCCACCGTGTGACCGTTGTTGATCTTACGGCTTCTGGT  140

Query  121  GTGAACATGAGCAAAGTGGAAGAGATTCAGACTTTGGCGGATTACGCTAAGCCGTTGCTT  180
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  141  GTGAACATGAGCAAAGTGGAAGAGATTCAGACTTTGGAGGATTACGCTAAGCCGTTGCTT  200

Query  181  GAAG-TTCTCGAGTCGTTTGGTTCAGAGGATAAGGTTATCCTCGTTGCACATAGCCTCGG  239
             ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  201  -AAGGTTCTTGAGTCGTTTGGTTCAGAGGATAAGGTTATCCTCGTTGCACATAGCCTCAG  259

Query  240  AGGGATATCAGTTGGTCTTGCAGCTGACATGTTTCCTAGTAAGATCTCTGTTGCTGTCTT  299
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  260  AGGGATATCAGTTGGTCTTGCAGCCGACATGTTTCCTAGTAAGATCTCTGTTGCTGTCTT  319

Query  300  CATAACCTCTTTCATGCCTGATACAACGAATCCACACCTTTTTATGTTTTCGAAAAGT-T  358
            ||||||||||||||||||||||||||||||||||| | || ||| ||||||||||||| |
Sbjct  320  CATAACCTCTTTCATGCCTGATACAACGAATCCAC-C-TTCTTACGTTTTCGAAAAGTAT  377

Query  359  -TCG-T-G-G----G-A-G----C-G-TTG--T--GGAGTTTGAGACATATGGGACACAT  398
             ||| | | |    | | |    | | ||   |  |||||||| ||||||||||| ||||
Sbjct  378  CTCGGTAGTGTTATGGAAGAAGACAGGTTAAATATGGAGTTTGGGACATATGGGAGACAT  437

Query  399  GATCGTCCTCTAACCACTATTCTTCTTGGAACTAGTGTACTTAGCCAAGAAGATGTATCA  458
            ||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||
Sbjct  438  GATCGTCCTCTAACCACTATTCTTCTTGGAACTAAA-TACTTAGCCAAGAACATGTATCA  496

Query  459  ACTTTCTCCAGTCGAAGA  476
            |||||||||| |||||||
Sbjct  497  ACTTTCTCCAATCGAAGA  514



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19650128335


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5