BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37150.1
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490932 jgi|Araly1|490932|fgenesh2_kg.7__365__AT4G37150.1 1253 0.0
Ahg320178 jgi|Araly1|320178|fgenesh1_pm.C_scaffold_4000235 128 7e-29
> Ahg490932 jgi|Araly1|490932|fgenesh2_kg.7__365__AT4G37150.1
Length=825
Score = 1253 bits (678), Expect = 0.0
Identities = 779/828 (94%), Gaps = 6/828 (1%)
Strand=Plus/Plus
Query 13 aaaa-aaaGGCAAAACACTCACGAAAGAAGAAACGGAGAGGATGAAGCATTATGTGCTAG 71
|||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1 AAAAGAAA-GCAACACACTCACGAAAGAAGAAACAGAGAGGATGAAGCATTATGTGCTTG 59
Query 72 TTCACGGAGGCTGCCACGGTGCGTGGTGTTGGTACAAGGTGAAGCCGATGCTTGAACATT 131
||||||||||||||||||| |||||||| |||||||||||||||||||| || |||||||
Sbjct 60 TTCACGGAGGCTGCCACGGCGCGTGGTGCTGGTACAAGGTGAAGCCGATTCTGGAACATT 119
Query 132 CCGGCCACCGTGTCACGGTTTTTGATCTTACGGCG-CATGGTGTGAACATGAGCAGAGTA 190
|||| ||||||||||||||| ||||||| |||||| | |||||||||| |||||||||||
Sbjct 120 CCGGTCACCGTGTCACGGTTCTTGATCTGACGGCGTC-TGGTGTGAACGTGAGCAGAGTA 178
Query 191 GAAGATATTCAGACTTTGGAGGATTTCGCTAAGCCGTTGCTTGAGGTTCTTGAGTCTTTT 250
||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 179 GAAGATATTCAGACTTTGGAGGATTACGCTAAGCCGTTGCTTGAGGTTCTTGAATCGTTT 238
Query 251 GGCTCGGATGATAAAGTAGTCCTCGTCGCGCATAGCCTCGGTGGAATACCGGCTGCTCTT 310
|||||||||||||||||| ||||||||||||||||||| || |||||||| |||||||||
Sbjct 239 GGCTCGGATGATAAAGTAATCCTCGTCGCGCATAGCCTTGGAGGAATACCAGCTGCTCTT 298
Query 311 GCAGCCGACATGTTTCCTAGTAAAATCTCTGTTGCTGTCTTCGTTACTTCTTTTATGCCC 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCAGCCGACATGTTTCCTAGTAAAATCTCTGTTGCTGTCTTCGTTACTTCTTTTATGCCC 358
Query 371 GACACAACGAATCCACCTTCTTACGTGTTCGAAAAGTTTCTCGGAAGCATTACAGAAGAA 430
|||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 359 GACACAACGAATCCACCTTCTTACGTATTCGAAAAGGTTCTCGGGAGCATTACAGAAGAA 418
Query 431 GAACGTATGGA-CTTCGAGTTAGGGAGCTATGGAACAGATGACCATCCACTAAAGACTGC 489
||||||||||| || |||||| ||||||||||||||| |||| |||| |||| ||||||
Sbjct 419 GAACGTATGGATCT-CGAGTTGGGGAGCTATGGAACAAATGAAGATCCTCTAATGACTGC 477
Query 490 TTTTCTTGGACCTAACTACTTGAAGAATATGTATCTACTTTCTCCTATCGAAGATTATGA 549
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTTTCTTGGACCTAACTACTTAAAGAATATGTATCTACTTTCTCCTATCGAAGATTATGA 537
Query 550 ATTGGCCAAAATGTTGATGAGAGTCACACCGGCTATTACTAGTAATCTGACGGGGACTAA 609
|||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||
Sbjct 538 ATTGGCCAAAATGTTGATGAGAGTTGCACCGGCTATTACTAGTAACCTTACGGGGACTAA 597
Query 610 AAGCTTAACGGCACAAGGATATGGATCGATTAGTCGTGTGTATATCGTATGCGGAGAAGA 669
||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 598 AAGCTTAACGGAACAAGGATATGGATCGATTACTCGTGTGTATATTGTATGCGGAGAAGA 657
Query 670 TAAAGGTATACGTGTAGATTTCCAACGATGGATGATTGAGAACTCTCCGGTTAAAGAAGT 729
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 658 TAAAGGTATAAGTGTAGATTTCCAACGATGGATGATCGAGAACTCTCCGGTTAAAGAAGT 717
Query 730 GATGGAGATCAAAGATGCAGATCATATGCCTATGTTTTCCAAGCCTCATGAACTCTGTGA 789
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 718 GATGGTGATCAAAGATGCAGATCACATGCCTATGTTTTCCAAGCCTCATGAACTCTGTGA 777
Query 790 TCGTCTTCTAAAGATTGCTGATAAATATCCCTAAGCAAGAATATCTAT 837
|||||||||||||||||||||||||||| | ||||||||| ||| |||
Sbjct 778 TCGTCTTCTAAAGATTGCTGATAAATATGCTTAAGCAAGACTATGTAT 825
> Ahg320178 jgi|Araly1|320178|fgenesh1_pm.C_scaffold_4000235
Length=792
Score = 128 bits (69), Expect = 7e-29
Identities = 116/139 (83%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 686 GATTTCCAACGATGGATGATTGAGAACTCTCCGGTTAAAGAAGTGATGGAGATCAAAGAT 745
|||| ||| || | |||||| | |||| |||||| |||||||| |||||||||||||||
Sbjct 655 GATTACCAGCGTTCGATGATCAACAACTTTCCGGTGAAAGAAGTAATGGAGATCAAAGAT 714
Query 746 GCAGATCATATGCCTATGTTTTCCAAGCCTCATGAACTCTGTGATCGTCTTCTAA-AGAT 804
|||||||||||||| ||||| ||||||||||| ||||| |||| || ||| || ||||
Sbjct 715 GCAGATCATATGCCAATGTTCTCCAAGCCTCAAGAACTATGTGCTCTTCT-CTTGGAGAT 773
Query 805 TGCTGATAAATATCCCTAA 823
||| |||||||| |||||
Sbjct 774 TGCAAATAAATATGCCTAA 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34501239885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5