BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37160.1
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490933 jgi|Araly1|490933|fgenesh2_kg.7__366__AT4G37160.1 2706 0.0
Ahg320180 jgi|Araly1|320180|fgenesh1_pm.C_scaffold_4000237 1243 0.0
> Ahg490933 jgi|Araly1|490933|fgenesh2_kg.7__366__AT4G37160.1
Length=1627
Score = 2706 bits (1465), Expect = 0.0
Identities = 1573/1627 (97%), Gaps = 0/1627 (0%)
Strand=Plus/Plus
Query 1 ATGAAACAGACCAATCTCCTGGTATGTAAATTATTCATAGGAGCCCTGTTTTGGTTAGGC 60
||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||
Sbjct 1 ATGAAACAGACCAATCTGCTGCTATGTAAATTATTCATAGGAACCCTGTTTTGGTTGGGC 60
Query 61 TCTGTTTTGGTTAATGCAGAAGACCCATATATGTTCTACACTTGGACTGTTACTTATGGT 120
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 61 TCTGTTTTAGTTAATGCAGAAGACCCATATCTGTTCTACACTTGGACTGTTACTTACGGC 120
Query 121 ACAAGATCTCCTTTAGGTGTTCCTCAACAGGTCATTCTTATCAATGGACAGTTCCCTGGT 180
||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 ACACGATATCCTCTAGGTGTTCCTCAAGAGGTCATTCTTATCAATGGACAGTTCCCTGGT 180
Query 181 CCAGCGATTGAAGCGGTCACAAACAACAACATTGTTGTTAATCTCATTAACAAGCTGGAC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CCAGCGATTGAAGCGGTCACAAACAACAACATTGTTGTTAATCTCATTAACAAGCTCGAC 240
Query 241 GAGCCATTCCTCATCACCTGGAATGGAGTGAAGCAGAGGAGGACATCGTGGCAAGATGGA 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGCCATTCCTCATTACCTGGAATGGAGTGAAGCAGAGGAGGACATCGTGGCAAGATGGA 300
Query 301 GTATTGGGAACAAACTGTCCGATCCAACCAAACTCGAACTGGACTTACCAGTTTCAACTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTATTGGGAACAAACTGTCCGATCCAACCAAACTCGAACTGGACTTACCAGTTTCAACTT 360
Query 361 AAAGATCAAATCGGTACTTACACTTACTTCGCTTCCACGTCACTGCACCGAGCCAGTGGT 420
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 361 AAAGATCAAATCGGTACTTACACTTACTTCGCTTCCACGTCAATGCATCGAGCCAGTGGT 420
Query 421 GCTTTTGGTGCTCTCAACATTAACCAGAGATCTGTTATTACGACTCCTTATCCAACACCC 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 GCTTTTGGTGCTCTCAACATTAACCAGAGAGCTGTTATTACGACTCCTTATCCAACACCC 480
Query 481 GATGGAGATTTCACCCTCCTCGTCTCTGACTGGTTCTCAAATATGACCCACAAGGACTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATGGAGATTTCACCCTCCTCGTCTCTGACTGGTTCTCAAATATGACCCACAAGGACTTG 540
Query 541 CGAAAATCGCTCGACGCAGGCTCTGCTCTTCCTCTTCCTGATGCTCTTCTCATCAATGGA 600
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 CGAAAAGGGCTCGACGCAGGCTCTGTTCTTCCTCTTCCTGATGCTCTTCTCATCAATGGA 600
Query 601 GTCTCTAAAGGTTTAATCTTTACCGGTCAACAAGGTAAAACATACAAGTTCCGGGTATCC 660
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 GTCTCTAAAGGTTTAATCTTTACCGGTCAACAAGGTAAAACATATAAGTTCCGGGTATCG 660
Query 661 AATGTCGGTATAGCTACATCGATAAATTTTAGGATTCAAAATCACACAATGAGCCTCATT 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATGTCGGTATAGCGACATCGATAAATTTTAGGATTCAAAATCACACAATGAGCCTCATT 720
Query 721 GAAGTAGAAGGCGCTCACACTCTTCAGGAGAGTTATGAGTCGCTTGACGTCCACGTTGGT 780
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 721 GAAGTAGAAGGCGCTCACACTCTTCAGGAGAGCTATGAGTCGCTTGACGTCCACGTTGGT 780
Query 781 CAGTCCATGACCGTCCTGGTCACTTTAAAAGCTTCTGTGAGGGACTATTTCATCGTGGCC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CAGTCCATGACCGTCCTGGTCACTTTAAAAGCTTCTGTGAGGGACTATTTCATCGTGGCC 840
Query 841 TCAACCCGGTTTACAAAACCGGTACTAACCACAACCGCGAGTCTCCGTTACCAAGGCTCC 900
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCAACCCGGTTTACTAAACCGGTACTAACCACAACCGCGAGTCTCCGTTACCAAGGCTCC 900
Query 901 AAAAACGCTGCATATGGGCCTCTCCCCATTGGTCCTACTTACCATATCCATTGGTCCATG 960
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 901 AAAAACGCTGCATATGGGCCCCTCCCCATTGGTCCTACTTACCATATCCATTGGTCTATG 960
Query 961 AAACAAGCAAGAACCATTAGGATGAATTTGACGGCAAATGCTGCAAGGCCAAACCCACAA 1020
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAACAAGCAAGAACCATAAGGATGAATTTGACGGCAAATGCTGCAAGGCCAAACCCACAA 1020
Query 1021 GGATCATTTCATTACGGGACCATACCAATAAACCGAACTCTAGTCCTAGCCAATGCAGCC 1080
|||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| |||
Sbjct 1021 GGATCATTTCATTACGGGACTATACCGATAAACCGAACTATAGTCCTAGCCAATGCGGCC 1080
Query 1081 ACATTGATCTACGGGAAGCTTCGGTACACAGTAAACCGAATATCATACATCAACCCAACA 1140
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1081 ACATTGATCTACGGGAAACTTCGGTACACGGTAAACCGAATATCATACATCAACCCAACA 1140
Query 1141 ACACCATTGAAACTCGCTGATTGGTACAACATCTCGGGCGTGTTCGATTTCAAGACAATC 1200
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1141 ACACCATTGAAACTCGCCGATTGGTATAACATTTCGGGCGTGTTCGATTTCAAGACAATC 1200
Query 1201 ATTAGCACTCCAACAACCGGACCGGCTCATATTGGTACATCGGTTATCGACGTTGAACTT 1260
||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||
Sbjct 1201 ATTAGCACTCCAACAACCGGACCCGCTCATTTTGGTACATCGGTTATCAACGTTGAACTT 1260
Query 1261 CATGAGTTCGTCGAAATCGTTTTCCAAAACGACGAAAGATCAATTCAATCTTGGCACATG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CATGAGTTCGTCGAAATCGTTTTCCAAAACGACGAAAGATCAATTCAATCTTGGCACATG 1320
Query 1321 GACGGTACTAGCGCCTATGCTGTCGGATACGGGTCAGGGACATGGAACGTGACCATGAGG 1380
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1321 GACGGTACTAGCGCCTATGCTGTCGGATACGGATCAGGAACATGGAATGTGACCATGAGG 1380
Query 1381 AAACGTTACAACTTGGTTGATGCTGTTCCAAGACACACTTTTCAGGTGTATCCGTTATCG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AAACGTTACAACTTGGTTGATGCTGTTCCAAGACACACTTTTCAGGTGTATCCGTTATCG 1440
Query 1441 TGGACAACCATATTGGTGTCGTTGGATAACAAAGGAATGTGGAATCTAAGGTCACAAATA 1500
||||||| |||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1441 TGGACAAGCATATTGGTGTCATTAGATAACAAAGGAATGTGGAATCTTAGGTCACAAATA 1500
Query 1501 TGGTCGAGGAGGTATTTAGGACAAGAGCTCTATGTTCGTGTTTGGAACGATGAGAAGTCT 1560
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1501 TGGTTGAGGAGGTATTTAGGACAAGAGCTTTATGTTCGTGTTTGGAACGATGAGAAGTCT 1560
Query 1561 CTCTACACTGAAGCTGAGCCTCCTCTTAACGTTCTTTATTGCGGCAAAGCCAAACGTCCC 1620
| ||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||
Sbjct 1561 CCCTACACTGAAGCTGAACCGCCTCTTAACGCTCTTTATTGCGGCAAAGCCAAACGTCCC 1620
Query 1621 CTTTAGA 1627
||||||
Sbjct 1621 ATTTAGA 1627
> Ahg320180 jgi|Araly1|320180|fgenesh1_pm.C_scaffold_4000237
Length=1626
Score = 1243 bits (673), Expect = 0.0
Identities = 1304/1604 (81%), Gaps = 62/1604 (4%)
Strand=Plus/Plus
Query 59 GCTCTG-TTTTG-G-TTAATGCAGAAGACCCATATATGTTCTACACTTGGACTGTTACTT 115
|||||| ||||| | | || ||||| ||||| ||| | |||| |||||||||||||||||
Sbjct 53 GCTCTGTTTTTGTGATAAACGCAGAGGACCCGTATCTTTTCTTCACTTGGACTGTTACTT 112
Query 116 ATGGTACAAGATCTCCTTTAGGTGTTCCTCAACAGGTCATTCTTATCAATGGACAGTTCC 175
|||| || ||||||||||||||||||||||||||||| || ||||| ||||| ||||| |
Sbjct 113 ATGGAACCAGATCTCCTTTAGGTGTTCCTCAACAGGTTATACTTATTAATGGCCAGTTTC 172
Query 176 CTGGTCCAGCGATTGAAGCG-GTCACAAACAACAACATTGTTGTTAATCTCATTAACAAG 234
||||||| | ||||||| | || |||||||| || || ||||||||| |||||||||||
Sbjct 173 CTGGTCCTCCAATTGAAG-GTGTAACAAACAATAATATCGTTGTTAATGTCATTAACAAG 231
Query 235 CTGGACGAGCCATTCCTCATCACCTGGAATGGAGTGAAGCAGAGGAGGACATCGTGGCAA 294
|| ||||| || ||||||||||||||||||||| | || |||||||||| |||||||||
Sbjct 232 CTTGACGAACCTTTCCTCATCACCTGGAATGGAATTAAACAGAGGAGGATGTCGTGGCAA 291
Query 295 GATGGAGTATTGGGAACAAACTGTCCGATCCAACCAAACTCGAACTGGACTTACCAGTTT 354
|| || || ||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 292 GACGGTGTTTTGGGAACAAACTGTCCGATCCAACCAAAATCGAATTGGACTTACCATTTT 351
Query 355 CAACTTAAAGATCAAATCGGTACTTACACTTACTTCGCTTCCACGTC-ACTGCACCGAGC 413
||||||||||| |||||||||||||| || ||||| ||||||||||| | ||||| ||||
Sbjct 352 CAACTTAAAGACCAAATCGGTACTTATACATACTTTGCTTCCACGTCGA-TGCACAGAGC 410
Query 414 CAGTGGTGCTTTTGGTGCTCTCAACATTAACCAGAGATCTGTTAT-TACGACTCCTTATC 472
|||||||||||||||| || || |||||||||| || || || | || |||||| |
Sbjct 411 AAGTGGTGCTTTTGGTGGACTTAATGTTAACCAGAGGTCAGTCATCTTCGT-TCCTTACC 469
Query 473 C-AACACCCGATGGAGATTTCACCCTCCTCGTCTCTGACTGGTTCTCAA-ATATGACCCA 530
| || ||| || | |||||||| ||||||||| ||| |||| | || || ||| |
Sbjct 470 CTAA-ACCAGACGCTGATTTCACTCTCCTCGTCGGTGATTGGTAC--AAGATGGGAC--A 524
Query 531 CAAGGA-CTTGCGAAA-ATCGCTCGACGCAGGCTC-TGCTCTTCCTCTTCCTGATGCTCT 587
|||||| || ||| | | ||||||| |||| || || |||||||| ||| |||| |||
Sbjct 525 CAAGGAACT-GCGTAGGAG-GCTCGACTCAGG-TCGTGATCTTCCTCCTCCGGATGGTCT 581
Query 588 TCTCATCAATGGAGTCT-CTAAAGGTTTAATCTTTACCGGTCAACAAGGTAAAACATACA 646
||||||||| || | || ||||||||||| |||| ||||| ||||| || || | ||| |
Sbjct 582 TCTCATCAACGGTG-CTTCTAAAGGTTTAGTCTTCACCGGGCAACATGGCAAGATATATA 640
Query 647 AGTTCCGGGTATCCAATGTCGGTATAGCTACATCGATAAATTTTAGGATTCAAA-ATCAC 705
||| ||| |||| ||||| || ||| | ||||| || || |||||||| ||| | |||
Sbjct 641 GGTTTCGGATATCGAATGTTGGGATATCGACATCAATTAACTTTAGGATACAAGGA-CAC 699
Query 706 ACAATGAGC-CTCATTGAAGTAGAAGGCGCTCACACTCTTCAGGAGAGT-TATGAGTCGC 763
| |||| | ||| |||||||||||||| |||||||||| || ||| || |||||||| |
Sbjct 700 ATGATGA-CTCTCGTTGAAGTAGAAGGCTCTCACACTCTACAAGAG-GTCTATGAGTCAC 757
Query 764 TTGACGTCCACGTTGGTCAGTCCATGACCGTCCTGGTCACTTTAAAAGCTTCTGTGAGGG 823
||||| | |||||||| ||||| ||||||| |||||||| || || ||| | |||| ||
Sbjct 758 TTGACATACACGTTGGCCAGTCTGTGACCGTGCTGGTCACATTGAAGGCTCCAGTGAAGG 817
Query 824 ACTA-TTTCATCGTGGCCTCAACCCGGTTTACAAAACCGGTACTAACCACAACCGCGAGT 882
|||| ||| || || || |||||||| ||||| |||||||| || || || || | || |
Sbjct 818 ACTACTTT-ATTGTAGCTTCAACCCGATTTACCAAACCGGTGCTGACTACTACAG-GAAT 875
Query 883 C-TCCGTTACCAAGGCTCCAAAAAC-G-CTGCATATGGGCCTCTCCCCATTGGTCCTACT 939
| || |||||||||||||||||| | | | ||| | || || |||||||||||||||
Sbjct 876 CCTCAGTTACCAAGGCTCCAAAATCAGAC--CATCTCATCCCCTTCCCATTGGTCCTACT 933
Query 940 TACCATATCCATTGGTCCATGAAACAAGCAAGAACCATTAGGATGAATTTGACGGCAAAT 999
|||||||| || |||||||||||||||||||||||||| ||| | ||||||||||| |||
Sbjct 934 TACCATATTCACTGGTCCATGAAACAAGCAAGAACCATCAGGTTAAATTTGACGGCGAAT 993
Query 1000 GCTGCAAGGCCAAACCCACAAGGATCATTTCATTACGGGACCATACCAATAAACCGAACT 1059
|| ||||| ||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||||
Sbjct 994 GCAGCAAGACCAAATCCACAAGGATCCTTTCACTACGGTACCATACCGATAAATCGAACT 1053
Query 1060 CTAGTCCTAGCCAATGCA-GC-CACATTGATCTACGGGAAGCTTCGGTACACAGTAAACC 1117
| || ||||||| | | | | | ||| | |||||||||||||||||||||||||
Sbjct 1054 TTTGTTTTAGCCAACGGAAGAGCG-AGC-ATCAATGGGAAGCTTCGGTACACAGTAAACC 1111
Query 1118 GAATATCATACATCAACCCAACAACACCATTGAAACTCGCTGATTGGTACAACAT-CTCG 1176
| | || ||| | ||||||||||| ||||||||| | || || |||| |||||| | ||
Sbjct 1112 GTGTGTCCTACGTTAACCCAACAACTCCATTGAAATTAGCCGACTGGTTCAACATTCCCG 1171
Query 1177 GGCGTGTTCGATTTCAAGACAATCATT-AGCACTCCAACAACC-GGACCGGCTC-ATAT- 1232
|| |||||| |||||||||| || || | || ||| ||| || ||||| ||| || |
Sbjct 1172 GG-GTGTTCAATTTCAAGACGATT-TTGAACATTCCTACA-CCAGGACC--CTCCAT-TC 1225
Query 1233 T-GGTACATCGGT-TATCGACGTTGAACTTCATGAGTTCGTCGAAATCGTTTTCCAAAAC 1290
| || || ||||| | | ||||| | |||||||||| |||||| |||| ||||| |||
Sbjct 1226 TCGGAACTTCGGTCTTT-GACGTGGCTCTTCATGAGTACGTCGAGTTCGTGTTCCAGAAC 1284
Query 1291 GACGAAAGATCAATTCAATCTTGGCACATGGACGGTACTAGCGCCTATGCTGTCGGATAC 1350
|||| | ||| || |||||||||||| | ||||| ||||| || |||| ||| ||||||
Sbjct 1285 AACGAGACATCTATACAATCTTGGCACCTTGACGGCACTAGTGCATATGTTGTTGGATAC 1344
Query 1351 GGGTCAGGG-ACATGGAACGTGACCATGAGGAAACGTTACAACTTGGTTGATGCTGTTCC 1409
||||| ||| ||||||||| || ||| |||| ||||||| ||||||||||||||| |
Sbjct 1345 GGGTC-GGGCACATGGAACATGGCCAACAGGAGGGGTTACAATTTGGTTGATGCTGTTTC 1403
Query 1410 AAGACACACTTTTCAGGTGTATCCGTTATCGTGGACAACCATATTGGTGTCGTTGGATAA 1469
||| |||||||||||||||||||| | |||||||| | ||||||||| || | || ||
Sbjct 1404 AAGGCACACTTTTCAGGTGTATCCAATGTCGTGGACGAGCATATTGGTATCACTAGACAA 1463
Query 1470 CAAAGGAATGTGGAATCTAAGGTCACAAATATGGTCGAGGAGGTATTTAGGACAAGAGCT 1529
|| |||||||||||| | ||||||||||||||||| ||||| || ||||||||||| ||
Sbjct 1464 TAAGGGAATGTGGAATTTGAGGTCACAAATATGGTCAAGGAGATACTTAGGACAAGAACT 1523
Query 1530 CTATGTTCGTGTTTGGAACGATGAGAAGTCTCTCTACACTGAAGCTGAGCCTCCTCTTAA 1589
|||||||||||| |||||||| |||| |||||| ||||||||||| ||||||||| ||||
Sbjct 1524 CTATGTTCGTGTATGGAACGACGAGAGGTCTCTTTACACTGAAGCCGAGCCTCCTGTTAA 1583
Query 1590 CGTTCT-TTATTGCGGCAAAGCCAAACGTCCCCT-TTAGATTTA 1631
| ||| || ||||||||||||||||||||||| || ||||||
Sbjct 1584 TGCTCTCTT-TTGCGGCAAAGCCAAACGTCCCCGCTT-GATTTA 1625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65324770175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5