BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37170.1 Length=2076 Score E Sequences producing significant alignments: (Bits) Value Ahg490934 jgi|Araly1|490934|fgenesh2_kg.7__367__AT4G37170.1 3105 0.0 Ahg941187 jgi|Araly1|941187|scaffold_601731.1 56.5 8e-07 > Ahg490934 jgi|Araly1|490934|fgenesh2_kg.7__367__AT4G37170.1 Length=2082 Score = 3105 bits (1681), Expect = 0.0 Identities = 1957/2089 (94%), Gaps = 23/2089 (1%) Strand=Plus/Plus Query 1 ATGAATCATTCAAATGCGAGAAAGTTAA-CTACTCTCCATGGATTTATATTAAAGAGAAA 59 |||||||| ||||||||||||||||||| | ||| | |||||||| ||||| ||||| || Sbjct 4 ATGAATCACTCAAATGCGAGAAAGTTAAGC-ACTTTTCATGGATTGATATTCAAGAGCAA 62 Query 60 TCTATCAT-CT-TT-TCACGCCTCACTGAAGCGGTTTTCAGATAAAAAGTTCTTCAATCC 116 |||| || || || | ||||||||| |||||| |||||||||||||||||||||||| | Sbjct 63 CCTATTATCCTCTTCTTACGCCTCACAGAAGCGATTTTCAGATAAAAAGTTCTTCAATTC 122 Query 117 GAACCAT-GAGGACGGTGGTGTTGTGGTGGAGCGATTATGTAGAGCTAATAGATTTGGTG 175 ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 GAAGC-TCGAGGACGGTGGTGTTGTGGTGGAGCGATTATGTAGAGCTAATAGATTTGGTG 181 Query 176 AAGCCATTGATGTATTATGTGGACAGAAGCTCTTAAGAGAAGCTGTTCAACTTCTGGGTC 235 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 182 AAGCCATTGATGTTTTATGTGGACAGAAGCTTTTAAGAGAAGCTGTTCAACTTCTGGGTC 241 Query 236 GGGCTAAGAAGCCACCTGCTTCTACTTATTGCAATCTCATTCAAGTTTGTAGCCAAACAC 295 | || |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 242 GAGCAAAGAAGCCACCTGCTTCTACTTATTGCAATCTTATTCAAGTTTGCAGCCAAACAC 301 Query 296 GTGCTCTTGAAGAAGGTAAGAAGGTCCATGAACACATTAGGACTTCTGGGTTTGTACCTG 355 | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 302 GCGCGCTTGAAGAAGGTAAGAAGGTCCATGAACACATTAGGGCTTCTGGGTTTGTACCTG 361 Query 356 GGATTGTTATATGGAACCGTCTTTTGAGAATGTATGCGAAATGTGGTAGCTTGGTTGATG 415 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 362 GGATTGTTATATGGAACCGTATTTTGGGAATGTATGCGAAATGTGGTAGCTTGGTTGATG 421 Query 416 CACGGAAGGTGTTCGACGAAATGCCGAATAGAGAT-TTGTGTTCGTGGAATGTAATGGTT 474 |||| ||||||||||||||||||||| | |||||| || || |||||||||||||||||| Sbjct 422 CACGAAAGGTGTTCGACGAAATGCCGGAGAGAGATGTT-TGCTCGTGGAATGTAATGGTT 480 Query 475 AATGGGTATGCGGAGGTTGGGTTGCTTGAGGAAGCGAGGAAGT-TGTTTGATGAAATGAC 533 |||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||| | Sbjct 481 AATGGGTATGCGGATGTTGGGTTGCTTGAGGAAGCGA-GAAATCTGTTTGATGAAATGCC 539 Query 534 TGAAAAAGATAGTTATTCGTGGACGGCTATGGTTACGGGTTATGTTAAGAAGGATCAGCC 593 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TGAAAGAGATAGTTATTCGTGGACGGCTATGGTTACGGGTTATGTTAAGAAGGATCAGCC 599 Query 594 TGAAGAGGCATTGGTGT-TGTATAGTTTGATGCAACGGGTACCGAATT-CAAGACCAAAC 651 ||||||||||||||| | ||||||| ||||||||| | |||||||||| ||| ||| ||| Sbjct 600 TGAAGAGGCATTGGT-TCTGTATAGCTTGATGCAAAGAGTACCGAATTCCAA-ACCCAAC 657 Query 652 ATTTTTACAGTTTCTATTGCAGTAGCTGCTGCTGCTGCGG-TTAAATGTATCCGTAGAGG 710 |||||||||||||| | |||||| ||||||||||||| || | ||||||||||||||||| Sbjct 658 ATTTTTACAGTTTCCAGTGCAGTGGCTGCTGCTGCTG-GGATGAAATGTATCCGTAGAGG 716 Query 711 GAAAGAGATTCATGGGCATATCGTTCGAGCTGGTTTGGATTCAGATGAAGTGCTTTGGAG 770 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 717 GAAAGAGATTCATGGGCATATCGTTCGAGCTGGTTTGGATTCAGATGAGGTGCTCTGGAG 776 Query 771 TTCATTGATGGATATGTATGGAAAATGTGGCTGTATCGATGAAGCAAGAAACATATTTGA 830 ||| |||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct 777 TTCGTTGATGGATATGTATGGAAAATGTGGCTGTATTGATGAAGCAAGAAATATCTTTGA 836 Query 831 TAAGATTGTTGAGAAAGATGTTGTCTCGTGGACATCAATGATAGATAGATATTTCAAGTC 890 |||||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 837 TAAGATAATTGACAAAGATGTTGTGTCGTGGACATCAATGATAGATAGGTATTTCAAGTC 896 Query 891 TAGTAGATGGCGGGAAGGGTTTTCTTTGTTTTCCGAGTTGGTAGGTTCTTGTGAACGGCC 950 |||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 897 TAGTAGATGGCGAGAAGGGTTTTCTTTGTTTTCTGAGTTGATAGGTTCTTGTGAACGGCC 956 Query 951 CAATGAATACACTTTTGCTGGAGTCTTGAATGCTTGTGCTGATCTCACAACAGAAGAGCT 1010 ||||| || |||||| ||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 957 TAATGAGTATACTTTTTCTGGAGTTTTGAACGCTTGTGCTGATCTCACAACAGAAGAGCT 1016 Query 1011 AGGGAAGCAAGTTCATGGATATATGACAAGAGTTGGGTTTGATCCTTACTCTTTTGCATC 1070 ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1017 AGGGAGGCAAGTTCATGGATACATGACAAGAGTTGGGTTTGATCCCTACTCTTTTGCATC 1076 Query 1071 AAGCTCTCTTGTAGATATGTACACCAAATGTGGAAATATTGAAAGTGCAAAACACGTTGT 1130 |||||||||| |||| |||||||| ||||||||||| ||||| || |||| ||||||||| Sbjct 1077 AAGCTCTCTTATAGACATGTACACGAAATGTGGAAACATTGAGAGCGCAAGACACGTTGT 1136 Query 1131 CGATGGATGTCCTAAACCCGATTTAGTTTCTTGGACTTCTTTGATCGGAGGGTGTGCTCA 1190 || |||||||||||||| ||||||||||||| ||||||||||||||| |||| ||| || Sbjct 1137 TGACGGATGTCCTAAACCTGATTTAGTTTCTTTGACTTCTTTGATCGGTGGGTATGCCCA 1196 Query 1191 GAATGGGCAACCTGATGAAGCCTTGAAATATTTCGACTTGCTCCTCAAATCCGGCACTAA 1250 ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1197 GAATGGGAAACCTGATGAAGCCTTGAAGTATTTCGACTTGCTCCTCAAATCCGGCACAAA 1256 Query 1251 ACCTGACCATGTTACCTTTGTAAACGTCCTCTCCGCTTGTACTCATGCCGGATTGGTCGA 1310 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1257 ACCTGATCATGTTACCTTTGTAAACGTCCTCTCCGCTTGTACTCATGCCGGGTTGGTCGA 1316 Query 1311 AAAAGGACTCGAATTCTTCTATTCTATAACTGAGAAACACAG-GTTATCTCATACTTCTG 1369 ||||||||| |||||||||||||||||||| ||||||||| | ||| | |||||||||| Sbjct 1317 AAAAGGACTGGAATTCTTCTATTCTATAACAGAGAAACAC-GATTTAACGCATACTTCTG 1375 Query 1370 ATCATTACACTTGTCTTGTTGATCTTTTAGCTCGGTCTGGAAGATTCGAACAGTTAAAGA 1429 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1376 ATCATTACACTTGTCTTGTTGATCTATTAGCTCGGTCTGGAAGATTCGAACAGTTAAAAA 1435 Query 1430 GCGTCATTAGTGAAATGCCGATGAAACCGAGTAAGTTTCTGTGGGCTTCTGTGCTCGGTG 1489 |||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||| Sbjct 1436 GCGTCATTAGCGAAATGCCGATGAAACCGAGTAAGTTTCTATGGGCTTCCGTTCTCGGTG 1495 Query 1490 GGTGTAGCACTTACGGAAACATTGACCTAGCAGAGGAAGCGGCTCAAGAACTGTTCAAGA 1549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1496 GGTGTAGCACTTACGGAAACATTGACCTAGCAGAGGAAGCGGCTCAAGAACTGTTCAAGA 1555 Query 1550 TAGAACCCGAAAATCCTGTTACTTATGTTACAATGGCTAACATCTATGCTGCAGCAGGTA 1609 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1556 TAGAACCCGAAAATCCTGTTACTTATGTTACAATGGCTAATATCTATGCTGCAGCAGGAA 1615 Query 1610 AATGGGAGGAAGAAGGGAAAATGAGAAAGAGAATGCAAGAAATCGGAGTCACCAAA-AGG 1668 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || Sbjct 1616 AATGGGAGGAAGAAGGGAAAATGAGAAAGAGAATGCAAGAAATAGGAATCACCAAACAG- 1674 Query 1669 CCTGGTTCAAGCTGGACCGAGATAAAACGGAAGCGTCATGTATTCATAGCAGCGGATACT 1728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1675 CCTGGTTCAAGCTGGACCGAGATAAAACGGAAGCGTCATGTATTCATAGCAGCGGATACT 1734 Query 1729 TCGCATCCAATGTATAACCAAATAGTTGAGTTCTTGAGG-GAATTGAGGAAGAAGATGAA 1787 |||||||||||||||||||||||| ||||||||||| || ||||||||| |||||||||| Sbjct 1735 TCGCATCCAATGTATAACCAAATAATTGAGTTCTTG-GGTGAATTGAGGGAGAAGATGAA 1793 Query 1788 AGAAGAAGGGTATGTTCCGGCTACGAGTCTTGTATTGCACGATGTAGAAGATGAACAAAA 1847 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1794 AGAAGAAGGGTATGTTCCCGCTACAAGTCTTGTATTGCACGATGTAGAAGATGAACAAAA 1853 Query 1848 AGAAGAGAATCTTGTGTATCATAGCGAGAAACTTGCTGTTGCATTTGCAATTCTATCGAC 1907 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1854 AGAAGAGAATCTTGTGTATCATAGCGAGAAACTTGCTGTTGCGTTTGCGATTCTATCGAC 1913 Query 1908 AGAAGAAGGAACGGCGATTAAGGTGTTTAAGAACTTGAGGTCTTGTGTGGATTGTCACGG 1967 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1914 AGAAGAAGGAACGGCGATTAAGGTGTTTAAGAACTTGAGGTCTTGTGTGGATTGTCACAG 1973 Query 1968 TGCTATTAAGTTCATATCGAACATCACAAAGAGGAAGATAACCGTAAGGGACTCTACTCG 2027 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| Sbjct 1974 TGCTATTAAGTTCATATCGAAAATCACAAAGAGGAAGATAACCATAAGGGACTCGACTCG 2033 Query 2028 GTTTCATTGCTTTGAGAATGGACAATGTTCTTGTGGAGATTATTGGTAA 2076 ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2034 GTTTCATTGCTTTGAGAATGGACAATGTTCTTGCAGAGATTATTGGTAA 2082 > Ahg941187 jgi|Araly1|941187|scaffold_601731.1 Length=2596 Score = 56.5 bits (30), Expect = 8e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 411 TGATGCACGGAAGGTGTTCGACGAAATGCC 440 |||||||||||||||||||||||||||||| Sbjct 560 TGATGCACGGAAGGTGTTCGACGAAATGCC 589 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78085002250 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5