BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37170.1
Length=2076
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490934 jgi|Araly1|490934|fgenesh2_kg.7__367__AT4G37170.1 3105 0.0
Ahg941187 jgi|Araly1|941187|scaffold_601731.1 56.5 8e-07
> Ahg490934 jgi|Araly1|490934|fgenesh2_kg.7__367__AT4G37170.1
Length=2082
Score = 3105 bits (1681), Expect = 0.0
Identities = 1957/2089 (94%), Gaps = 23/2089 (1%)
Strand=Plus/Plus
Query 1 ATGAATCATTCAAATGCGAGAAAGTTAA-CTACTCTCCATGGATTTATATTAAAGAGAAA 59
|||||||| ||||||||||||||||||| | ||| | |||||||| ||||| ||||| ||
Sbjct 4 ATGAATCACTCAAATGCGAGAAAGTTAAGC-ACTTTTCATGGATTGATATTCAAGAGCAA 62
Query 60 TCTATCAT-CT-TT-TCACGCCTCACTGAAGCGGTTTTCAGATAAAAAGTTCTTCAATCC 116
|||| || || || | ||||||||| |||||| |||||||||||||||||||||||| |
Sbjct 63 CCTATTATCCTCTTCTTACGCCTCACAGAAGCGATTTTCAGATAAAAAGTTCTTCAATTC 122
Query 117 GAACCAT-GAGGACGGTGGTGTTGTGGTGGAGCGATTATGTAGAGCTAATAGATTTGGTG 175
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GAAGC-TCGAGGACGGTGGTGTTGTGGTGGAGCGATTATGTAGAGCTAATAGATTTGGTG 181
Query 176 AAGCCATTGATGTATTATGTGGACAGAAGCTCTTAAGAGAAGCTGTTCAACTTCTGGGTC 235
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 182 AAGCCATTGATGTTTTATGTGGACAGAAGCTTTTAAGAGAAGCTGTTCAACTTCTGGGTC 241
Query 236 GGGCTAAGAAGCCACCTGCTTCTACTTATTGCAATCTCATTCAAGTTTGTAGCCAAACAC 295
| || |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 242 GAGCAAAGAAGCCACCTGCTTCTACTTATTGCAATCTTATTCAAGTTTGCAGCCAAACAC 301
Query 296 GTGCTCTTGAAGAAGGTAAGAAGGTCCATGAACACATTAGGACTTCTGGGTTTGTACCTG 355
| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 302 GCGCGCTTGAAGAAGGTAAGAAGGTCCATGAACACATTAGGGCTTCTGGGTTTGTACCTG 361
Query 356 GGATTGTTATATGGAACCGTCTTTTGAGAATGTATGCGAAATGTGGTAGCTTGGTTGATG 415
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 362 GGATTGTTATATGGAACCGTATTTTGGGAATGTATGCGAAATGTGGTAGCTTGGTTGATG 421
Query 416 CACGGAAGGTGTTCGACGAAATGCCGAATAGAGAT-TTGTGTTCGTGGAATGTAATGGTT 474
|||| ||||||||||||||||||||| | |||||| || || ||||||||||||||||||
Sbjct 422 CACGAAAGGTGTTCGACGAAATGCCGGAGAGAGATGTT-TGCTCGTGGAATGTAATGGTT 480
Query 475 AATGGGTATGCGGAGGTTGGGTTGCTTGAGGAAGCGAGGAAGT-TGTTTGATGAAATGAC 533
|||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||| |
Sbjct 481 AATGGGTATGCGGATGTTGGGTTGCTTGAGGAAGCGA-GAAATCTGTTTGATGAAATGCC 539
Query 534 TGAAAAAGATAGTTATTCGTGGACGGCTATGGTTACGGGTTATGTTAAGAAGGATCAGCC 593
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGAAAGAGATAGTTATTCGTGGACGGCTATGGTTACGGGTTATGTTAAGAAGGATCAGCC 599
Query 594 TGAAGAGGCATTGGTGT-TGTATAGTTTGATGCAACGGGTACCGAATT-CAAGACCAAAC 651
||||||||||||||| | ||||||| ||||||||| | |||||||||| ||| ||| |||
Sbjct 600 TGAAGAGGCATTGGT-TCTGTATAGCTTGATGCAAAGAGTACCGAATTCCAA-ACCCAAC 657
Query 652 ATTTTTACAGTTTCTATTGCAGTAGCTGCTGCTGCTGCGG-TTAAATGTATCCGTAGAGG 710
|||||||||||||| | |||||| ||||||||||||| || | |||||||||||||||||
Sbjct 658 ATTTTTACAGTTTCCAGTGCAGTGGCTGCTGCTGCTG-GGATGAAATGTATCCGTAGAGG 716
Query 711 GAAAGAGATTCATGGGCATATCGTTCGAGCTGGTTTGGATTCAGATGAAGTGCTTTGGAG 770
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 717 GAAAGAGATTCATGGGCATATCGTTCGAGCTGGTTTGGATTCAGATGAGGTGCTCTGGAG 776
Query 771 TTCATTGATGGATATGTATGGAAAATGTGGCTGTATCGATGAAGCAAGAAACATATTTGA 830
||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 777 TTCGTTGATGGATATGTATGGAAAATGTGGCTGTATTGATGAAGCAAGAAATATCTTTGA 836
Query 831 TAAGATTGTTGAGAAAGATGTTGTCTCGTGGACATCAATGATAGATAGATATTTCAAGTC 890
|||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 837 TAAGATAATTGACAAAGATGTTGTGTCGTGGACATCAATGATAGATAGGTATTTCAAGTC 896
Query 891 TAGTAGATGGCGGGAAGGGTTTTCTTTGTTTTCCGAGTTGGTAGGTTCTTGTGAACGGCC 950
|||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 897 TAGTAGATGGCGAGAAGGGTTTTCTTTGTTTTCTGAGTTGATAGGTTCTTGTGAACGGCC 956
Query 951 CAATGAATACACTTTTGCTGGAGTCTTGAATGCTTGTGCTGATCTCACAACAGAAGAGCT 1010
||||| || |||||| ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 957 TAATGAGTATACTTTTTCTGGAGTTTTGAACGCTTGTGCTGATCTCACAACAGAAGAGCT 1016
Query 1011 AGGGAAGCAAGTTCATGGATATATGACAAGAGTTGGGTTTGATCCTTACTCTTTTGCATC 1070
||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1017 AGGGAGGCAAGTTCATGGATACATGACAAGAGTTGGGTTTGATCCCTACTCTTTTGCATC 1076
Query 1071 AAGCTCTCTTGTAGATATGTACACCAAATGTGGAAATATTGAAAGTGCAAAACACGTTGT 1130
|||||||||| |||| |||||||| ||||||||||| ||||| || |||| |||||||||
Sbjct 1077 AAGCTCTCTTATAGACATGTACACGAAATGTGGAAACATTGAGAGCGCAAGACACGTTGT 1136
Query 1131 CGATGGATGTCCTAAACCCGATTTAGTTTCTTGGACTTCTTTGATCGGAGGGTGTGCTCA 1190
|| |||||||||||||| ||||||||||||| ||||||||||||||| |||| ||| ||
Sbjct 1137 TGACGGATGTCCTAAACCTGATTTAGTTTCTTTGACTTCTTTGATCGGTGGGTATGCCCA 1196
Query 1191 GAATGGGCAACCTGATGAAGCCTTGAAATATTTCGACTTGCTCCTCAAATCCGGCACTAA 1250
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1197 GAATGGGAAACCTGATGAAGCCTTGAAGTATTTCGACTTGCTCCTCAAATCCGGCACAAA 1256
Query 1251 ACCTGACCATGTTACCTTTGTAAACGTCCTCTCCGCTTGTACTCATGCCGGATTGGTCGA 1310
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1257 ACCTGATCATGTTACCTTTGTAAACGTCCTCTCCGCTTGTACTCATGCCGGGTTGGTCGA 1316
Query 1311 AAAAGGACTCGAATTCTTCTATTCTATAACTGAGAAACACAG-GTTATCTCATACTTCTG 1369
||||||||| |||||||||||||||||||| ||||||||| | ||| | ||||||||||
Sbjct 1317 AAAAGGACTGGAATTCTTCTATTCTATAACAGAGAAACAC-GATTTAACGCATACTTCTG 1375
Query 1370 ATCATTACACTTGTCTTGTTGATCTTTTAGCTCGGTCTGGAAGATTCGAACAGTTAAAGA 1429
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1376 ATCATTACACTTGTCTTGTTGATCTATTAGCTCGGTCTGGAAGATTCGAACAGTTAAAAA 1435
Query 1430 GCGTCATTAGTGAAATGCCGATGAAACCGAGTAAGTTTCTGTGGGCTTCTGTGCTCGGTG 1489
|||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 1436 GCGTCATTAGCGAAATGCCGATGAAACCGAGTAAGTTTCTATGGGCTTCCGTTCTCGGTG 1495
Query 1490 GGTGTAGCACTTACGGAAACATTGACCTAGCAGAGGAAGCGGCTCAAGAACTGTTCAAGA 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 GGTGTAGCACTTACGGAAACATTGACCTAGCAGAGGAAGCGGCTCAAGAACTGTTCAAGA 1555
Query 1550 TAGAACCCGAAAATCCTGTTACTTATGTTACAATGGCTAACATCTATGCTGCAGCAGGTA 1609
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1556 TAGAACCCGAAAATCCTGTTACTTATGTTACAATGGCTAATATCTATGCTGCAGCAGGAA 1615
Query 1610 AATGGGAGGAAGAAGGGAAAATGAGAAAGAGAATGCAAGAAATCGGAGTCACCAAA-AGG 1668
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct 1616 AATGGGAGGAAGAAGGGAAAATGAGAAAGAGAATGCAAGAAATAGGAATCACCAAACAG- 1674
Query 1669 CCTGGTTCAAGCTGGACCGAGATAAAACGGAAGCGTCATGTATTCATAGCAGCGGATACT 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 CCTGGTTCAAGCTGGACCGAGATAAAACGGAAGCGTCATGTATTCATAGCAGCGGATACT 1734
Query 1729 TCGCATCCAATGTATAACCAAATAGTTGAGTTCTTGAGG-GAATTGAGGAAGAAGATGAA 1787
|||||||||||||||||||||||| ||||||||||| || ||||||||| ||||||||||
Sbjct 1735 TCGCATCCAATGTATAACCAAATAATTGAGTTCTTG-GGTGAATTGAGGGAGAAGATGAA 1793
Query 1788 AGAAGAAGGGTATGTTCCGGCTACGAGTCTTGTATTGCACGATGTAGAAGATGAACAAAA 1847
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1794 AGAAGAAGGGTATGTTCCCGCTACAAGTCTTGTATTGCACGATGTAGAAGATGAACAAAA 1853
Query 1848 AGAAGAGAATCTTGTGTATCATAGCGAGAAACTTGCTGTTGCATTTGCAATTCTATCGAC 1907
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1854 AGAAGAGAATCTTGTGTATCATAGCGAGAAACTTGCTGTTGCGTTTGCGATTCTATCGAC 1913
Query 1908 AGAAGAAGGAACGGCGATTAAGGTGTTTAAGAACTTGAGGTCTTGTGTGGATTGTCACGG 1967
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1914 AGAAGAAGGAACGGCGATTAAGGTGTTTAAGAACTTGAGGTCTTGTGTGGATTGTCACAG 1973
Query 1968 TGCTATTAAGTTCATATCGAACATCACAAAGAGGAAGATAACCGTAAGGGACTCTACTCG 2027
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 1974 TGCTATTAAGTTCATATCGAAAATCACAAAGAGGAAGATAACCATAAGGGACTCGACTCG 2033
Query 2028 GTTTCATTGCTTTGAGAATGGACAATGTTCTTGTGGAGATTATTGGTAA 2076
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2034 GTTTCATTGCTTTGAGAATGGACAATGTTCTTGCAGAGATTATTGGTAA 2082
> Ahg941187 jgi|Araly1|941187|scaffold_601731.1
Length=2596
Score = 56.5 bits (30), Expect = 8e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 411 TGATGCACGGAAGGTGTTCGACGAAATGCC 440
||||||||||||||||||||||||||||||
Sbjct 560 TGATGCACGGAAGGTGTTCGACGAAATGCC 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78085002250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5