BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37190.1
Length=2029
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944176 jgi|Araly1|944176|scaffold_700405.1 2822 0.0
Ahg490939 jgi|Araly1|490939|fgenesh2_kg.7__372__AT4G37200.1 58.4 2e-07
> Ahg944176 jgi|Araly1|944176|scaffold_700405.1
Length=1732
Score = 2822 bits (1528), Expect = 0.0
Identities = 1664/1731 (96%), Gaps = 4/1731 (0%)
Strand=Plus/Plus
Query 89 TCTCCAATCAAACAACCATGAGAGAAATTGTGACGATTCAAGTTGGAGAATTCGCAAACT 148
|||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 4 TCTCCAATTAAAGAACCATGAGAGAAATTGTGACTATTCAAGTTGGAGAATTCGCAAACT 63
Query 149 TTGTTGGCTCTCACTTTTGGAATTTCCAGGATGAATTGCTCGGATTGGCTAGTGACCCTG 208
| || ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 64 TCGTCGGCTCCCACTTTTGGAATTTCCAGGATGAATTGCTCGGATTGGCAAGTGACCCAG 123
Query 209 AAAGCGATCCAATCTTTAGAAACCATAATCTCGACATGGATGTTCTCTACCGCTCCGGTG 268
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 124 AAAGCGATCCAATCTTTAGAAACCATAATCTCGACATGGACGTTCTCTACCGCTCCGGTG 183
Query 269 AGACCCAGCAGGGGGTTGCTACATACACTCCTCGT-TTGGTTTCAGTCAACTTAAAAGGG 327
||||| |||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 184 AGACCTTGCAGGGGGTTGCTACATACACTCCTCGTCTT-CTTTCAGTCAACTTGAAAGGG 242
Query 328 GCACTAGGGACCATGAGCTCACGCGGTACACTTTACAACGAAGGTTCTTCATCAAGATCA 387
||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 243 TCACTAGGCACCATGAGCTCACGCGGTACCCTCTACAACGAGGGTTCTTCATCAAGATCA 302
Query 388 GATTCTTCAGCAACCTGGTTTGGAGATGTTGATACTCAGAGATCTGAACCTCGAAAGAGG 447
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GATTCTTCAACAACCTGGTTTGGAGATGTTGATACTCAGAGATCTGAACCTCGAAAGAGG 362
Query 448 AACTTGTTTCTGCAAAGTTTGTACGAGGAAGAACATGTAGTGGGGAAAGAAAAGGCGAAA 507
||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 363 AACTTGTTTCTGCAAAGTTTGTACGAGGAGGAACATATAGTGGGTAAAGAAAAGGCGAAA 422
Query 508 GAGATTGAGGACAAAGATATTGTTGGATGCTTAGATGAGGAAGTTGAATGTTGGACTGAC 567
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GTGATTGAGGACAAAGATATTGTTGGATGCTTAGATGAGGAAGTTGAATGTTGGACTGAC 482
Query 568 TTCTCTAAATCCCATTATCATCCTCAAAGTTTATATGAATTGAACGGATTATGGATGGAC 627
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 483 TTCTCCAAATCCCATTATCATCCTCAAAGTTTGTACGAATTGAACGGATTATGGATGGAC 542
Query 628 TCTCAGGCTTTTAACAATTATGGAATTGGTAAAGACGTTTTCTCTGAGGCTTCACGTGGA 687
||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 543 TCTCAGGATTTTAACAATTATGGAATTGGCAAAGATGTTTTCTCTGAGGCTTCACGTGGA 602
Query 688 GAGGAAATATGTGACAGACTCCGTTTTTTCGTGGAAGAGTGTGATCATATTCAGGGTATT 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GAGGAAATATGTGACAGACTCCGTTTTTTCGTGGAAGAGTGTGATCATATTCAGGGTATT 662
Query 748 AAGTTCCTAGTGGATGATTCGGGAGGATTTTCCGCTGTAGCAGCGGATTTCCTTGAAAAC 807
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 663 AAGTTCCTTGTGGATGATTCGGGAGGATTTTCAGCTGTAGCAGCGGATTTCCTTGAGAGC 722
Query 808 ATGGCAGATGAGTACACGAATGTACCTGTATTGCTATATTCCGTAAGGACTCCAATGTCA 867
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 723 ATGGCAGATGAGTACACGAACGTACCTGTATTGCTATATTCCGTAAGGAGTCCAATGTCA 782
Query 868 CAGATGAGCTC-GAAAAAGACAGTTTCAAACAAGCTTCACGATGCGATATCGTTTTCTCG 926
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CAGATGAGC-CAGAAAAAGACAGTTTCAAACAAGCTTCACGATGCGATATCGTTTTCTCG 841
Query 927 ACTCTCATCCTTTTGTAAACTCTTCACTCCAATCGGTTTACCATCTTTGACAGGAAGTAA 986
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 842 ACTCTCTTCCTTTTGTAAACTCTTCACTCCAATCGGTTTACCATCCTTGACCGGAAGTAA 901
Query 987 AGCATCAAAATTTCTTAATCTCGGTGATGAGAAACCTTATCGAAGCAGTGCAGTGTACGC 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 AGCATCAAAATTTCTTAATCTCGGTGATGAGAAACCTTATCGAAGCAGTGCAGTGTACGC 961
Query 1047 CGCTGCTCTACATTCAAGCACAATACCTTTCCGAATGCAACCCACTAGCTCAGATTCAAG 1106
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 962 CGCTGCTCTACATTCAAGCACAATCCCTTTCCGAATGCAACCCACTAGCTCAGATTCAAG 1021
Query 1107 TGAAGTGTCAAATTCTATGGATGTTAATACACTTGTACAGCTTTTAACGGGTCGTGGTAG 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TGAAGTGTCAAATTCTATGGATGTTAATACACTTGTACAGCTTTTAACGGGTCGTGGTAG 1081
Query 1167 ACAAAACATAGTGGCGATTTTAGATTCTGCAATGCCAGCTCCTACATTAGCAGGGAAGCA 1226
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1082 ACAAAACATAGTGTCGATTTTAGACTCTGCAATGCCAGCTCCTACATTAGCAGGGAAGCA 1141
Query 1227 ATTAGAGAATACTCTTTTAACGAGTTTGCAAGCACTAACGCCGGAAGTAACTGAAGATGT 1286
|||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1142 ATTAGAGAATACCCTTTTAACGAGTTTGCAAGCACTAACACCGCAAGTAACTGAAGATGT 1201
Query 1287 AGAAGACAATCAAGCGGTTGAGTCAATGTGTATACTTGGAGCCCTTAGATCAGAAGATAA 1346
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 GGAAGACGATCAAGCGGTTGAGTCAATGTGTATACTTGGAGCCCTTAGATCAGAAGATAC 1261
Query 1347 AGAAGCATTGGTTTCAGAAGTGAAGAATGCGGTTGATGCATCTTACGAACAGGCAACCAC 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1262 AGAAGCATTGGTTTCAGAAGTGAAGAATGCGGTTGATGCATCTTACGAACAGGCAACAAC 1321
Query 1407 CAAAGGGAAACCGTTGTTTTGCAATCTATCGGTTTCGCGTTGTCCTCTTCCGGTACCATT 1466
||||||||| |||||| |||||||||| || || ||||||||||||||||||||||||||
Sbjct 1322 CAAAGGGAAGCCGTTGATTTGCAATCTCTCTGTCTCGCGTTGTCCTCTTCCGGTACCATT 1381
Query 1467 ACCGTTTCCTTCTATATTTGGAAACCTTGTTGGGAGGAAAGGTGAGATACTGAGCAGTCC 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 ACCGTTTCCTTCTATATTTGGAAACCTTGTTGGGAGGAAAGGTGAGATACTGAGCAGTCC 1441
Query 1527 AGTCTCGGATTCTCTCTACAGAGGCTCACTAGATGTTCACTCCATACCAGTAGCAACAAG 1586
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1442 GGTCTCGGATTCTCTGTACAGAGGCTCACTGGATGTTCACTCCATACCAGTAGCAACAAG 1501
Query 1587 ATGGAGATCTTCAAGCGCAATTTTGCCATTTTTGGAAACTAGAATGGGGAATTTAGAGAA 1646
|||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1502 ATGGAGATCTTCGAGCGCAGTTTTGCCATTTTTGGAAAGTAGAATGGGGAATTTAGAGAA 1561
Query 1647 ACTTGGGATCCAGTGGGGAGCCATGGGATCAGATGTGGTTAGGGCCTGGGGATTTGGGAG 1706
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1562 ACTTGGGATCCAATGGGGAGCCATGGGATCAGATGTGGTTAGGGCATGGGGATTTGGGAG 1621
Query 1707 AGAAGAATTGCAGGAAATGAGGGAGAATCTGTCAAAAATGGTATCTGAGCTGAATCCTCA 1766
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 AGAAGAATTGCAAGAAATGAGGGAGAATCTGTCAAAAATGGTATCTGAGCTGAATCCTCA 1681
Query 1767 GTTTTTCGAATCTTCGGATTCAGATTAGTTATGTCTTAAAACGAATATGTT 1817
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1682 GTTTTTCGAATCTTCGGATTCAGATTAGTTATGTCTTAAAACTAATATGTT 1732
> Ahg490939 jgi|Araly1|490939|fgenesh2_kg.7__372__AT4G37200.1
Length=1013
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Minus
Query 1988 GGGATTCTTTTGATCAATTTGAAACATTGCT 2018
|||||||||||||||||||||||||||||||
Sbjct 1013 GGGATTCTTTTGATCAATTTGAAACATTGCT 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76294760735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5