BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37200.1
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490939 jgi|Araly1|490939|fgenesh2_kg.7__372__AT4G37200.1 1476 0.0
> Ahg490939 jgi|Araly1|490939|fgenesh2_kg.7__372__AT4G37200.1
Length=1013
Score = 1476 bits (799), Expect = 0.0
Identities = 962/1036 (93%), Gaps = 30/1036 (3%)
Strand=Plus/Plus
Query 22 TAACAAAAAGCGTGTGGCTCTAATAGCTTGGTTAGACGAAGAAGCTACTACTCCTTCGAT 81
||||||||| ||||||| || ||||||||||||||||||||||||||| || || ||||
Sbjct 1 TAACAAAAAACGTGTGGTTCGAATAGCTTGGTTAGACGAAGAAGCTACAAC-ACTACGAT 59
Query 82 AATAACGATCTGATG-AGTAGCAGTTTTGTCATCTCTCTCACTCTCTC-C-CGACGATGG 138
||| ||||||||||| |||| ||||||||||||||||||| ||||||| | |||||||||
Sbjct 60 AATGACGATCTGATGAAGTAACAGTTTTGTCATCTCTCTCTCTCTCTCTCGCGACGATGG 119
Query 139 CTCGCTTAGTATTTTCTTTAAACCTTCCATCTAGTCATGGATTCAATCTCAGTCCTCGAA 198
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTCGCTTAATCTTTTCTTTAAACCTTCCATCTAGTCATGGATTCAATCTCAGTCCTCGAA 179
Query 199 ATCTTCAATCTTTCTTCGTTACCCAAACAGGAGCTCCACGATTTCGCGCTGTTCGTTGCA 258
||| ||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||
Sbjct 180 ATCATCAATCTTTCTTCATTACCAAAACAGGAGCTCCACGATTTCGTGCTGTTCGTTGCA 239
Query 259 AACCAAACCCAGAATCTTCCGAAACCAAACAGGAGAAATTGGTAATAGAT-A-A-TGGTG 315
|||||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||
Sbjct 240 AACCAAACCCAGAATCTTCCGAAACCAAACAGGAGAAATTGGTAGTAGATAATATTGGTG 299
Query 316 AAACTTCATCTGCATCGAAGGAAGTGGAATCATCATCATCTGTTGCTGACtcttcttctt 375
||| |||| ||||||||||| || ||| | ||||||||||||||| ||||||||
Sbjct 300 AAAGTTCAGCTGCATCGAAGAAAATGG----A--ATCATCTGTTGCTGA---TTCTTCTT 350
Query 376 cttcttcttcGGGATTCCCTGAATCTCCCAATAAGGATATCAATAGAAGAGTTGCGGCTG 435
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CCTCTTCTTCTGGATTCCCTGAATCTCCCAATAAGGATATCAATAGAAGAGTTGCGGCTG 410
Query 436 TTACTGTAATCGCGGCTTTGTCGTTATTTGTATCGACAAGGCTCGATTTTGGGATTTCTT 495
||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| |
Sbjct 411 TTACTGTAATCGCGGCTTTGTCGTTGTTTGTGTCAACAAGGCTCGATTTTGGGATTTCAT 470
Query 496 TGAAGGATTTAACCGCTTCTGCGTTGCCTTACGAGGAGGCGTTATCGAATGGGAAGCCGA 555
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 471 TGAAGGATTTAACCGCTTCTGCGTTGCCTTACGAGGAGGCTTTGTCGAATGGGAAGCCGA 530
Query 556 CTGTTGTTGAGTTCTATGCAGATTGGTGTGAAGTTTGTCGAGAACTAGCTCCTGATGTTT 615
| || || ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 531 CAGTGGTAGAGTTTTATGCAGATTGGTGTGAGGTTTGTCGAGAACTAGCCCCTGATGTTT 590
Query 616 ATAAAATCGAGCAGCAATACAAGGACAAAGTTAACTTTGTGATGCTAAATGTGGACAACA 675
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 ACAAAATCGAGCAGCAATACAAGGACAAAGTTAACTTTGTGATGCTAAATGTGGACAACA 650
Query 676 CGAAATGGGAGCAAGAGTTGGATGAGTTTGGTGTTGAGGGTATTCCTCATTTCGCCTTCC 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CGAAATGGGAGCAAGAGTTGGATGAGTTTGGTGTTGAGGGTATTCCTCATTTCGCCTTCC 710
Query 736 TCGATAGAGAAGGGAACGAAGAAGGTAATGTGGTCGGGAGGCTCCCAAGACAGTATTTAG 795
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 711 TCGATAGAGAAGGGAACGAAGAAGGTAATGTGGTCGGGAGGCTCCCGAGACAGTATTTAG 770
Query 796 TTGAAAATGTGAATGCGCTTGCAGCCGGGAAACAATCAATTCCTTATGCCCGAGCCGTGG 855
|||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 771 TTGAAAATGTAAATGCGCTTGCAGCCGGGAAGCAATCAATTCCTCATGCCCGAGCCGTGG 830
Query 856 GACAGTACTCAAGCT-CAGAGTCTCGTAAGGTGCATCAGGTTACTGATCCCTTAAGCCAT 914
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GACAGTACTCAAG-TGCCGAGTCTCGTAAGGTGCATCAGGTTACTGATCCCTTAAGCCAT 889
Query 915 GGATAAAGAGAGTGGCATCACTATCATGCTTCTGGCAGATGATAGAAGTTGTTTCTAACT 974
||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 890 GGATAGAGAGAGTGACATCACTATCATGGTTCTGGCAGATGATAGAAGTTGTTTCTAACT 949
Query 975 CTATAGTGCACaaaaaaaGTAGACAGGAAAGGAAAGTCGGAAAGTAGCAATGTTTCAAAT 1034
||||||||||||||||| ||||||||||| | | | | | | |||||||||||||
Sbjct 950 CTATAGTGCACAAAAAA-GTAGACAGGAA-GTA--G-C--A--G---CAATGTTTCAAAT 997
Query 1035 TGATCAAAAGAATCCC 1050
||||||||||||||||
Sbjct 998 TGATCAAAAGAATCCC 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42316437870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5