BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37210.1
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490940 jgi|Araly1|490940|fgenesh2_kg.7__373__AT4G37210.1 2403 0.0
Ahg927005 jgi|Araly1|927005|scaffold_202566.1 545 3e-154
Ahg944439 jgi|Araly1|944439|scaffold_700668.1 117 3e-25
> Ahg490940 jgi|Araly1|490940|fgenesh2_kg.7__373__AT4G37210.1
Length=1767
Score = 2403 bits (1301), Expect = 0.0
Identities = 1632/1783 (92%), Gaps = 57/1783 (3%)
Strand=Plus/Plus
Query 4 AAGTCCGCCaaaaaaaGCGAAGAGAGGGTTTTA-----A-TACGATTC--C-ACTCTT-C 53
||||||||||||||||||||||||||||||||| | ||||| | | |||||| |
Sbjct 1 AAGTCCGCCAAAAAAAGCGAAGAGAGGGTTTTACTTTTACGACGATACAACAACTCTTGC 60
Query 54 TCAACAAATTTGACGTTTTTGTTCTTCGAAATTCAAATTCACCCAGAAAAAATC-TCAAT 112
|||||||||||||||||||||||||| || ||||||||||| ||| ||||||| | |||
Sbjct 61 -CAACAAATTTGACGTTTTTGTTCTTCCAATTTCAAATTCACACAG-AAAAATCGT-AAT 117
Query 113 CCGCGATGGTTGAAGAATCAGCTTCTGCGTCGGAAGCTTCGGTGATACAAACCCTAACCG 172
| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 118 CTACGATGGTTGAAGAATCAGCTTCAGCATCGGAAGCTTCGGTGATACAAACCCTAACCG 177
Query 173 AGCCGGCGACGGAGATTGCGCAAACCCTAGAACCTAACCTAGCCTCAATCGAAGCCACCG 232
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AGCCTGCGACGGAGATACCGCAAACCCTAGAACCTAACCTAGCCTCAATCGAAGCCACCG 237
Query 233 TCGAATCGGTTGTTCAGGGAGGCACTGAATCGACTTGTAACAACGACGCTAATAACAACA 292
||||||| ||||| || ||||||||||| ||||||| |||||||| ||||||||||| |
Sbjct 238 TCGAATCTGTTGTGCAAGGAGGCACTGAGTCGACTTCCAACAACGATGCTAATAACAATA 297
Query 293 ACGCCGCTGACAGTGCTGCTACTGAGGTTTGTGATGAGGAGCGTGAGAAGACGCTTGAGT 352
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ACGCCGCCGATAGTGCCGCTACTGAGGTTTGTGATGAGGAGCGTGAGAAGACGCTTGAGT 357
Query 353 TCGCTGAGGAATTGACGGAGAAAGGCTCTGTGTTTTTGAAAGAGAACGATTTCGCTGAAG 412
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 358 TCGCTGAGGAATTGACGGAGAAAGGCTCTGTGTTTTTGAAAGAGAATGATTTCGCTGAAG 417
Query 413 CCGTCGATTGCTTCAGCCGTGCTCTCGAAATCAGGGTTGCACATTATGGTGAACTTGATG 472
|||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 418 CCGTCGATTGCTTCAGCCGTGCCCTCGAGATCAGGGTTGCACATTTTGGTGAACTTGATG 477
Query 473 CTGAGTGTATAAACGCATACTATCGATATGGATTAGCTCTCCTGGCA-AAGGCTCAAGCT 531
|||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 478 CTGAGTGTGTAAACGCATACTATCGATATGGATTAGCTCTCCTGG-AGAAGGCTCAAGCT 536
Query 532 GAAGCTGATCCACTTGGGAACATGCCTAAGAAAGAAGGTGAAGTTCAGCAAGAGTCCAGC 591
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 537 GAAGCTGATCCACTTGGTAACATGCCTAAGAAAGAAGGTGAAGTTCAGCAAGAGTGTAGC 596
Query 592 AATGGTGAATCGCTGGCTCCTTCTGTTGTTTC-AGGTGACCCAGAGAGACAAGGGAGTTC 650
||||||||||| ||||||| ||||||||||| | || || | |||||||||||||||||
Sbjct 597 AATGGTGAATCTTTGGCTCCATCTGTTGTTTCTA-GTAACACGGAGAGACAAGGGAGTTC 655
Query 651 AAGTGGGCAAGAAGGTTCTGGTGGTAAAGACCAAGGAGAGGATGGTGAAGATTGTCAAGA 710
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AAGTGGGCAAGATGGTTCTGGTGGTAAAGACCAAGGAGAGGATGGTGAAGATTGTCAAGA 715
Query 711 TGATGACCTATCTGATGCTGATGGTGATGCTGATGAAGATGAGTCTGATTTGGATATGGC 770
||||||||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 716 TGATGACCTATCTGATGCTGA---TG--G-TGATGAAGATGAGTCTGATTTGGATATGGC 769
Query 771 CTGGAAAATGCTGGACATTGCTAGGGTTATTACTGACAAACAGTCTACTGAGACAATGGA 830
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 770 CTGGAAAATGCTGGACATTGCAAGGGCTATTACTGACAAACAGTCTACTGAGACAATGGA 829
Query 831 AAAAGTGGATATACTCTGTTCGCTTGCTGAAGTGTCCTTGGAAAGAGAGGACATTGAGTC 890
||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||
Sbjct 830 AAAAGTGGATATACTCTGTTCGCTTGCTGAAATTTCCTTGGAAAGAGAGGACATCGAGTC 889
Query 891 TTCCCTGTCTGACTACAAGAATGCATTATCCATCTTAGAGAGACTGGTTGAGCCCGACAG 950
||||||| ||||||||||||||||||| |||||||| ||| || ||||||||||||||||
Sbjct 890 TTCCCTGACTGACTACAAGAATGCATTGTCCATCTTGGAGCGATTGGTTGAGCCCGACAG 949
Query 951 TCGACGCACAGCTGAATTAAACTTCCGCATCTGCATTTGTCTTGAGACTGGATGTCAGCC 1010
||||| |||||||||||||||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 950 TCGACACACAGCTGAATTAAACTTCCGCATATGCATCTGTCTAGAAACTGGATGTCAGCC 1009
Query 1011 TAAGGAAGCAATACCATATTGTCAAAAAGCTTTGTTAATATGCAAAGCTCGGATGGAGAG 1070
||||||||||||||| ||||||||||||||| |||| || |||||||| ||||||||||
Sbjct 1010 TAAGGAAGCAATACCGTATTGTCAAAAAGCTATGTTCATCTGCAAAGCAAGGATGGAGAG 1069
Query 1071 GCTCAGTAATGAAATCAAAGGTGCATCTGGTTCAGCAACTTCCTCAACCGTCTCTGAAAT 1130
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1070 GCTCAGTAATGAGATCAAAGGTGCATCTTGTTCAGCAACTTCCTCAACCGTCTCTGAAAT 1129
Query 1131 AGATGAAGGCATCCAACAATCATCCAATGTTCCTTACATTGATAAATCTGCTTCAGACAA 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 AGATGAAGGCATCCAACAATCATCCAATGTTCCTTACATTGATAAATCTGCTTCAGACAA 1189
Query 1191 AGAAGTTGAGATCGGAGACTTAGCTGGTCTCGCTGAAGATCTAGAAAAGAAG-C------ 1243
||||| |||||| |||| |||||||||||||||||||||||||||||||||| |
Sbjct 1190 AGAAGCTGAGATTGGAGTCTTAGCTGGTCTCGCTGAAGATCTAGAAAAGAAGGCAAGAAA 1249
Query 1244 --T-----T-------GAGGATTTAAAACAACAAGCAGAGAACCCAAAGCAGGTTCTTGC 1289
| | |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1250 ACTAAACCTATCACTTGAGGATTTGAAACAACAAGCAGAGAACCCAAAGCAAGTTCTTGC 1309
Query 1290 TGAGCTAATGGGCATGGTATCAGCTAAG-CCAAATGCCAGTGACAAGGTTGTTCCTGCTG 1348
||||||||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||
Sbjct 1310 TGAGCTAATGGGCATGGTATCAGGTAAGGCCAC-TGCTAGTGACAAGGTTGTTCCTGCTG 1368
Query 1349 CTGCTG---AAATGAGCTCTTCTAGGATGGGAACTGTGAACACCAATTTCGGGAAAGATT 1405
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1369 CTGCTGCTGAAATGAGCTCTTCTAGGATGGGAACTGTGAATACCAATTTCGGGAAAGAAT 1428
Query 1406 TAGAGTCGCCTACAGTCTCAACCGCTCATACCGGTGCAGCAGGAGGAGGAGCAGCATCAG 1465
||||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1429 TAGAGTCACCTACGGTCTCAACCGCTCATACAGGTGCAGCAGGAGGAGGAGGAGCATCAG 1488
Query 1466 GTGTTACTCA-CTTGGGTGTTGTTGGAAGAGGAGTGAAGAGAGTTTTGATGAATACAACC 1524
|||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1489 GTGTTACTCATCT-GGGTGTTGTTGGAAGAGGAGTGAAGAGAGTTTTGATGAATGCAACC 1547
Query 1525 TC-GATTGAATCAAGTGCATCAAAGAAACCAGCTCTAGAGTTTTCAGACAAAGCAGATGG 1583
|| | | |||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1548 TCTG-TCGAATCAAGTGCATCAAAGAAACCAGCTCCCGAATTTTCAGACAAAGCAGATGG 1606
Query 1584 CAACTCCTCTTGAAACCGGAAAAAGGTATAAAAATTCCTGTTACTAGTGAAGTATCTAAC 1643
||||||||||||||| |||||||||||||||||||| || |||||| | |||| | ||||
Sbjct 1607 CAACTCCTCTTGAAAGCGGAAAAAGGTATAAAAATTTCTATTACTACTTAAGTTT-TAAC 1665
Query 1644 CTAAGAAAACTGAGAAAAACATTTGGTATCTTCCTCATGAATCTTCCAAGACTAGATTTT 1703
| ||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1666 CGAAGAAAACTGAGAAACACATTTGGTATCATCCTCATGGATCTTCCAAGACTAGATTTT 1725
Query 1704 CAGGTTCAT-GTTTTGTAATGGAGTCCGTACTTGCTActtttt 1745
|||||| || || ||||||||| |||||||||| || ||||||
Sbjct 1726 CAGGTT-ATTGTATTGTAATGGGGTCCGTACTTACTGCTTTTT 1767
> Ahg927005 jgi|Araly1|927005|scaffold_202566.1
Length=499
Score = 545 bits (295), Expect = 3e-154
Identities = 360/390 (92%), Gaps = 9/390 (2%)
Strand=Plus/Plus
Query 492 CTATCGATATGGATTAGCTCTCCTGGCAAAGGCTCAAGCTGAAGCTGATCCACTTGGGAA 551
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 75 CTATCGATATGGAACAGCTCTCCTGG-AAAGGCTCAAGCTGAAGCTGATCCACTTGGTAA 133
Query 552 CATGCCTAAGAAAGAAGGTGAAGTTCAGCAAGAGTCCAGCAATGGTGAATCGCTGGCTCC 611
||| || ||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 134 CATACCCAAGAAAGAAGGCGAAGTTCAGCAGGAGTCCAGCAATGGTGAATCTTTGGCTCC 193
Query 612 TTCTGTTGTTTC-AGGTGACCCAGAGAGACAAGGGAGTTCAAGTGGGCAAGAAGGTTCTG 670
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 AACTGTTGTTTCTA-GTGACCCAGAGAGACAAGGGAGTTCAAGTGGGCAAGAAGGTTCTG 252
Query 671 GTGGTAAAGACCAAGGAGAGGATGGTGAAGATTGTCAAGATGATGACCTATCTGATGCTG 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GTGGTAAAGACCAAGGAGAGGATGGTGAAGATTGTCAAGATGATGACCTATCTGATGCTG 312
Query 731 ATGGTGATGCTGATGAAGATGAGTCTGATTTGGATATGGCCTGGAAAATGCTGGACATTG 790
||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 ATG------CTGATGAAGATGAGTCTGATTTGGATATGGCCTGGAAAATGCTGGACATTG 366
Query 791 CTAGGGTTATTACTGACAAACAGTCTACTGAGACAATGGAAAAAGTGGATATACTCTGTT 850
| |||| |||||||||||||||| ||||||| |||||||||||| | |||||||||||||
Sbjct 367 CAAGGGCTATTACTGACAAACAGCCTACTGATACAATGGAAAAATTTGATATACTCTGTT 426
Query 851 CGCTTGCTGAAGTGTCCTTGGAAAGAGAGG 880
| ||||||||| | || |||||||||||||
Sbjct 427 CCCTTGCTGAAATTTCTTTGGAAAGAGAGG 456
Score = 60.2 bits (32), Expect = 5e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 446 GGGTTGCACATTATGGTGAACTTGATGCTGAG 477
||||||||||||||||||||||||||||||||
Sbjct 43 GGGTTGCACATTATGGTGAACTTGATGCTGAG 74
> Ahg944439 jgi|Araly1|944439|scaffold_700668.1
Length=200
Score = 117 bits (63), Expect = 3e-25
Identities = 75/80 (94%), Gaps = 4/80 (5%)
Strand=Plus/Plus
Query 1055 AAGCTCGGATGGAGAGGCTCAGTAATGAAATCAAAGGTGCATCTGGTTCAGCAACTT--- 1111
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 AAGCTCGGATGGAGAGGCTCAGTAATGAGATCAAAGGTGCATCTGGTTCAGCAACTTAAT 180
Query 1112 -CCTCAACCGTCTCTGAAAT 1130
|||||||||||||||||||
Sbjct 181 TCCTCAACCGTCTCTGAAAT 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67572094630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5